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Protein

Ethylene-responsive transcription factor RAP2-3

Gene

RAP2-3

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity).By similarity1 Publication

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi78 – 135AP2/ERFPROSITE-ProRule annotationAdd BLAST58

GO - Molecular functioni

  • DNA binding Source: UniProtKB
  • DNA-binding transcription factor activity Source: TAIR
  • sequence-specific DNA binding Source: TAIR

GO - Biological processi

  • cell death Source: TAIR
  • ethylene-activated signaling pathway Source: TAIR
  • heat acclimation Source: TAIR
  • positive regulation of transcription, DNA-templated Source: TAIR
  • response to cytokinin Source: TAIR
  • response to ethylene Source: UniProtKB
  • response to jasmonic acid Source: UniProtKB
  • response to other organism Source: TAIR
  • transcription, DNA-templated Source: UniProtKB-KW

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation
LigandCadmium

Names & Taxonomyi

Protein namesi
Recommended name:
Ethylene-responsive transcription factor RAP2-3
Alternative name(s):
Cadmium-induced protein AS30
Ethylene response factor 72
Short name:
ERF72
Ethylene-responsive element binding protein
Short name:
AtEBP
Protein RELATED TO APETALA2 3
Short name:
Related to AP2 3
Gene namesi
Name:RAP2-3
Synonyms:EBP, ERF072
Ordered Locus Names:At3g16770
ORF Names:MGL6.1, MGL6.24
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G16770
TAIRilocus:2089368 AT3G16770

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Cell membrane, Cytoplasm, Membrane, Nucleus

Pathology & Biotechi

Mutagenesis

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Mutagenesisi151S → A: Loss of phosphorylation by MAPK6. 1 Publication1

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001125231 – 248Ethylene-responsive transcription factor RAP2-3Add BLAST248

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei151Phosphoserine; by MAPK61 Publication1

Keywords - PTMi

Phosphoprotein

Proteomic databases

PaxDbiP42736

PTM databases

iPTMnetiP42736

Expressioni

Tissue specificityi

Mostly expressed in stems and leaves, and, to a lower extent, in roots, siliques and flowers.2 Publications

Inductioni

By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium.2 Publications

Gene expression databases

ExpressionAtlasiP42736 baseline and differential
GenevisibleiP42736 AT

Interactioni

Subunit structurei

Interacts with TGA4/OBF4, ACBP2, and ACBP4.3 Publications

Binary interactionsi

Protein-protein interaction databases

BioGridi6263, 7 interactors
ELMiP42736
IntActiP42736, 4 interactors
STRINGi3702.AT3G16770.1

Structurei

3D structure databases

ProteinModelPortaliP42736
SMRiP42736
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi140 – 143Poly-Pro4

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG410IYVI Eukaryota
ENOG41113EY LUCA
HOGENOMiHOG000237624
InParanoidiP42736
KOiK09286
OMAiFLMEDFA
OrthoDBiEOG09360LUP
PhylomeDBiP42736

Family and domain databases

CDDicd00018 AP2, 1 hit
Gene3Di3.30.730.10, 1 hit
InterProiView protein in InterPro
IPR001471 AP2/ERF_dom
IPR036955 AP2/ERF_dom_sf
IPR016177 DNA-bd_dom_sf
PfamiView protein in Pfam
PF00847 AP2, 1 hit
PRINTSiPR00367 ETHRSPELEMNT
SMARTiView protein in SMART
SM00380 AP2, 1 hit
SUPFAMiSSF54171 SSF54171, 1 hit
PROSITEiView protein in PROSITE
PS51032 AP2_ERF, 1 hit

Sequencei

Sequence statusi: Complete.

P42736-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MCGGAIISDY APLVTKAKGR KLTAEELWSE LDASAADDFW GFYSTSKLHP
60 70 80 90 100
TNQVNVKEEA VKKEQATEPG KRRKRKNVYR GIRKRPWGKW AAEIRDPRKG
110 120 130 140 150
VRVWLGTFNT AEEAAMAYDV AAKQIRGDKA KLNFPDLHHP PPPNYTPPPS
160 170 180 190 200
SPRSTDQPPA KKVCVVSQSE SELSQPSFPV ECIGFGNGDE FQNLSYGFEP
210 220 230 240
DYDLKQQISS LESFLELDGN TAEQPSQLDE SVSEVDMWML DDVIASYE
Length:248
Mass (Da):27,758
Last modified:January 10, 2003 - v2
Checksum:i317D50CC514782F1
GO

Sequence cautioni

The sequence CAA71073 differs from that shown. Reason: Erroneous translation. Wrong choice of frame.Curated
The sequence CAA85734 differs from that shown. Probable cloning artifact leading to an insertion into the sequence.Curated
The sequence CAA85734 differs from that shown. Reason: Frameshift at position 20.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti42F → N in CAA85734 (Ref. 2) Curated1
Sequence conflicti121A → P in CAA85734 (Ref. 2) Curated1
Sequence conflicti223 – 224EQ → AR in CAA71073 (PubMed:9159183).Curated2

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y09942 mRNA Translation: CAA71073.1 Sequence problems.
Z37504 mRNA Translation: CAA85734.1 Sequence problems.
AF003096 mRNA Translation: AAC49769.1
AB022217 Genomic DNA Translation: BAB02769.1
CP002686 Genomic DNA Translation: AEE75863.1
AY059917 mRNA Translation: AAL24399.1
AY035100 mRNA Translation: AAK59605.1
AY142562 mRNA Translation: AAN13131.1
AY087488 mRNA Translation: AAM65031.1
RefSeqiNP_188299.1, NM_112550.5
UniGeneiAt.24773

Genome annotation databases

EnsemblPlantsiAT3G16770.1; AT3G16770.1; AT3G16770
GeneIDi820929
GrameneiAT3G16770.1; AT3G16770.1; AT3G16770
KEGGiath:AT3G16770

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y09942 mRNA Translation: CAA71073.1 Sequence problems.
Z37504 mRNA Translation: CAA85734.1 Sequence problems.
AF003096 mRNA Translation: AAC49769.1
AB022217 Genomic DNA Translation: BAB02769.1
CP002686 Genomic DNA Translation: AEE75863.1
AY059917 mRNA Translation: AAL24399.1
AY035100 mRNA Translation: AAK59605.1
AY142562 mRNA Translation: AAN13131.1
AY087488 mRNA Translation: AAM65031.1
RefSeqiNP_188299.1, NM_112550.5
UniGeneiAt.24773

3D structure databases

ProteinModelPortaliP42736
SMRiP42736
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi6263, 7 interactors
ELMiP42736
IntActiP42736, 4 interactors
STRINGi3702.AT3G16770.1

PTM databases

iPTMnetiP42736

Proteomic databases

PaxDbiP42736

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G16770.1; AT3G16770.1; AT3G16770
GeneIDi820929
GrameneiAT3G16770.1; AT3G16770.1; AT3G16770
KEGGiath:AT3G16770

Organism-specific databases

AraportiAT3G16770
TAIRilocus:2089368 AT3G16770

Phylogenomic databases

eggNOGiENOG410IYVI Eukaryota
ENOG41113EY LUCA
HOGENOMiHOG000237624
InParanoidiP42736
KOiK09286
OMAiFLMEDFA
OrthoDBiEOG09360LUP
PhylomeDBiP42736

Miscellaneous databases

PROiPR:P42736

Gene expression databases

ExpressionAtlasiP42736 baseline and differential
GenevisibleiP42736 AT

Family and domain databases

CDDicd00018 AP2, 1 hit
Gene3Di3.30.730.10, 1 hit
InterProiView protein in InterPro
IPR001471 AP2/ERF_dom
IPR036955 AP2/ERF_dom_sf
IPR016177 DNA-bd_dom_sf
PfamiView protein in Pfam
PF00847 AP2, 1 hit
PRINTSiPR00367 ETHRSPELEMNT
SMARTiView protein in SMART
SM00380 AP2, 1 hit
SUPFAMiSSF54171 SSF54171, 1 hit
PROSITEiView protein in PROSITE
PS51032 AP2_ERF, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiRAP23_ARATH
AccessioniPrimary (citable) accession number: P42736
Secondary accession number(s): O04382, O23105
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: January 10, 2003
Last modified: September 12, 2018
This is version 152 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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