Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Uncharacterized HTH-type transcriptional regulator YxaF

Gene

yxaF

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi28 – 47H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

Keywordsi

Molecular functionDNA-binding, Repressor
Biological processTranscription, Transcription regulation

Enzyme and pathway databases

BioCyciBSUB:BSU39990-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YxaF
Gene namesi
Name:yxaF
Ordered Locus Names:BSU39990
ORF Names:S14F
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000706551 – 191Uncharacterized HTH-type transcriptional regulator YxaFAdd BLAST191

Proteomic databases

PaxDbiP42105
PRIDEiP42105

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100021566

Structurei

Secondary structure

1191
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details

3D structure databases

ProteinModelPortaliP42105
SMRiP42105
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP42105

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini5 – 65HTH tetR-typePROSITE-ProRule annotationAdd BLAST61

Phylogenomic databases

eggNOGiENOG4105J7D Bacteria
ENOG4111TWN LUCA
HOGENOMiHOG000161263
InParanoidiP42105
KOiK18939
OMAiKGSLYHH
PhylomeDBiP42105

Family and domain databases

InterProiView protein in InterPro
IPR009057 Homeobox-like_sf
IPR001647 HTH_TetR
IPR036271 Tet_transcr_reg_TetR-rel_C_sf
IPR039419 TetR_trans_reg
PANTHERiPTHR30328 PTHR30328, 1 hit
PfamiView protein in Pfam
PF00440 TetR_N, 1 hit
PRINTSiPR00455 HTHTETR
SUPFAMiSSF46689 SSF46689, 1 hit
SSF48498 SSF48498, 1 hit
PROSITEiView protein in PROSITE
PS50977 HTH_TETR_2, 1 hit

Sequencei

Sequence statusi: Complete.

P42105-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MTSRGDSREK ILHTASRLFQ LQGYHATGLN QIVKESGAPK GSLYHFFPNG
60 70 80 90 100
KEELAIEAVT YTGKIVEHLI QQSMDESSDP VEAIQLFIKK TASQFDNTES
110 120 130 140 150
IKGIPVGLLA SETALISEPL RTVCMKVFKS WEAVFARKLM ENGFAEEEAN
160 170 180 190
QLGTLINSMI EGGIMLSLTN KDKTPLLLIA EQIPVLVRKK G
Length:191
Mass (Da):21,079
Last modified:July 28, 2009 - v2
Checksum:i2D35F49F1F60EF4F
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti19F → S in BAA21585 (PubMed:7584049).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB005554 Genomic DNA Translation: BAA21585.1
AL009126 Genomic DNA Translation: CAB16036.2
PIRiE70071
RefSeqiNP_391879.2, NC_000964.3
WP_003227022.1, NZ_JNCM01000034.1

Genome annotation databases

EnsemblBacteriaiCAB16036; CAB16036; BSU39990
GeneIDi937690
KEGGibsu:BSU39990
PATRICifig|224308.179.peg.4325

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB005554 Genomic DNA Translation: BAA21585.1
AL009126 Genomic DNA Translation: CAB16036.2
PIRiE70071
RefSeqiNP_391879.2, NC_000964.3
WP_003227022.1, NZ_JNCM01000034.1

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1SGMX-ray2.00A/B1-191[»]
ProteinModelPortaliP42105
SMRiP42105
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100021566

Proteomic databases

PaxDbiP42105
PRIDEiP42105

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB16036; CAB16036; BSU39990
GeneIDi937690
KEGGibsu:BSU39990
PATRICifig|224308.179.peg.4325

Phylogenomic databases

eggNOGiENOG4105J7D Bacteria
ENOG4111TWN LUCA
HOGENOMiHOG000161263
InParanoidiP42105
KOiK18939
OMAiKGSLYHH
PhylomeDBiP42105

Enzyme and pathway databases

BioCyciBSUB:BSU39990-MONOMER

Miscellaneous databases

EvolutionaryTraceiP42105

Family and domain databases

InterProiView protein in InterPro
IPR009057 Homeobox-like_sf
IPR001647 HTH_TetR
IPR036271 Tet_transcr_reg_TetR-rel_C_sf
IPR039419 TetR_trans_reg
PANTHERiPTHR30328 PTHR30328, 1 hit
PfamiView protein in Pfam
PF00440 TetR_N, 1 hit
PRINTSiPR00455 HTHTETR
SUPFAMiSSF46689 SSF46689, 1 hit
SSF48498 SSF48498, 1 hit
PROSITEiView protein in PROSITE
PS50977 HTH_TETR_2, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiYXAF_BACSU
AccessioniPrimary (citable) accession number: P42105
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: July 28, 2009
Last modified: November 7, 2018
This is version 123 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again