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Protein

60S ribosomal protein L13-1

Gene

RPL13B

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • mRNA binding Source: TAIR
  • structural constituent of ribosome Source: CAFA

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-ATH-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-ATH-1799339 SRP-dependent cotranslational protein targeting to membrane
R-ATH-72689 Formation of a pool of free 40S subunits
R-ATH-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-ATH-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-ATH-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L13-1
Alternative name(s):
Protein BBC1 homolog
Gene namesi
Name:RPL13B
Synonyms:BBC1
Ordered Locus Names:At3g49010
ORF Names:T2J13.150
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G49010
TAIRilocus:2101283 AT3G49010

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001929301 – 20660S ribosomal protein L13-1Add BLAST206

Proteomic databases

PaxDbiP41127
PRIDEiP41127

PTM databases

iPTMnetiP41127

Expressioni

Developmental stagei

Regulated during fruit maturation.1 Publication

Gene expression databases

ExpressionAtlasiP41127 baseline and differential
GenevisibleiP41127 AT

Interactioni

Protein-protein interaction databases

BioGridi9380, 3 interactors
IntActiP41127, 1 interactor
STRINGi3702.AT3G49010.1

Structurei

3D structure databases

ProteinModelPortaliP41127
SMRiP41127
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG3295 Eukaryota
COG4352 LUCA
HOGENOMiHOG000170452
InParanoidiP41127
KOiK02873
OMAiIVVDHRR
OrthoDBiEOG09360OQA
PhylomeDBiP41127

Family and domain databases

HAMAPiMF_00499 Ribosomal_L13e, 1 hit
InterProiView protein in InterPro
IPR001380 Ribosomal_L13e
IPR018256 Ribosomal_L13e_CS
PANTHERiPTHR11722 PTHR11722, 1 hit
PfamiView protein in Pfam
PF01294 Ribosomal_L13e, 1 hit
PROSITEiView protein in PROSITE
PS01104 RIBOSOMAL_L13E, 1 hit

Sequence (1+)i

Sequence statusi: Complete.

This entry describes 1 isoform i produced by alternative splicing. AlignAdd to basket
Note: A number of isoforms are produced. According to EST sequences.

This entry has 1 described isoform and 2 potential isoforms that are computationally mapped.Show allAlign All

Isoform 1 (identifier: P41127-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MKHNNVIPNG HFKKHWQNYV KTWFNQPARK TRRRIARQKK AVKIFPRPTS
60 70 80 90 100
GPLRPVVHGQ TLKYNMKVRT GKGFTLEELK AAGIPKKLAP TIGIAVDHRR
110 120 130 140 150
KNRSLEGLQT NVQRLKTYKT KLVIFPRRAR KVKAGDSTPE ELANATQVQG
160 170 180 190 200
DYLPIVREKP TMELVKLTSE MKSFKAFDKI RLERTNKRHA GARAKRAAEA

EKEEKK
Length:206
Mass (Da):23,767
Last modified:February 1, 1995 - v1
Checksum:iC67BA5E5534114C2
GO

Computationally mapped potential isoform sequencesi

There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A8MQA1A8MQA1_ARATH
60S ribosomal protein L13
BBC1 40S RIBOSOMAL PROTEIN, ATBBC1, breast basic conserved 1, RSU2, At3g49010
204Annotation score:
F4IWP7F4IWP7_ARATH
Breast basic conserved 1
BBC1 40S RIBOSOMAL PROTEIN, ATBBC1, breast basic conserved 1, RSU2, At3g49010
153Annotation score:

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti125F → S (PubMed:8580968).Curated1
Sequence conflicti175K → M in AAM61490 (Ref. 5) Curated1
Sequence conflicti197A → V in CAA84015 (PubMed:8580968).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X75162 mRNA Translation: CAA53005.1
AL132967 Genomic DNA Translation: CAB62009.1
CP002686 Genomic DNA Translation: AEE78482.1
CP002686 Genomic DNA Translation: AEE78483.1
CP002686 Genomic DNA Translation: AEE78484.1
CP002686 Genomic DNA Translation: ANM65192.1
CP002686 Genomic DNA Translation: ANM65193.1
AF428384 mRNA Translation: AAL16152.1
AY050854 mRNA Translation: AAK92791.1
AY065137 mRNA Translation: AAL38313.1
AY079381 mRNA Translation: AAL85112.1
AY081595 mRNA Translation: AAM10157.1
AY084928 mRNA Translation: AAM61490.1
Z34257 mRNA Translation: CAA84015.1
PIRiS37271
RefSeqiNP_001030831.1, NM_001035754.1 [P41127-1]
NP_001327179.1, NM_001339393.1 [P41127-1]
NP_001327180.1, NM_001339394.1 [P41127-1]
NP_190470.1, NM_114760.4 [P41127-1]
NP_850672.1, NM_180341.3 [P41127-1]
UniGeneiAt.22360

Genome annotation databases

EnsemblPlantsiAT3G49010.1; AT3G49010.1; AT3G49010 [P41127-1]
AT3G49010.2; AT3G49010.2; AT3G49010 [P41127-1]
AT3G49010.3; AT3G49010.3; AT3G49010 [P41127-1]
AT3G49010.6; AT3G49010.6; AT3G49010 [P41127-1]
AT3G49010.7; AT3G49010.7; AT3G49010 [P41127-1]
GeneIDi824062
GrameneiAT3G49010.1; AT3G49010.1; AT3G49010 [P41127-1]
AT3G49010.2; AT3G49010.2; AT3G49010 [P41127-1]
AT3G49010.3; AT3G49010.3; AT3G49010 [P41127-1]
AT3G49010.6; AT3G49010.6; AT3G49010 [P41127-1]
AT3G49010.7; AT3G49010.7; AT3G49010 [P41127-1]
KEGGiath:AT3G49010

Keywords - Coding sequence diversityi

Alternative splicing

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X75162 mRNA Translation: CAA53005.1
AL132967 Genomic DNA Translation: CAB62009.1
CP002686 Genomic DNA Translation: AEE78482.1
CP002686 Genomic DNA Translation: AEE78483.1
CP002686 Genomic DNA Translation: AEE78484.1
CP002686 Genomic DNA Translation: ANM65192.1
CP002686 Genomic DNA Translation: ANM65193.1
AF428384 mRNA Translation: AAL16152.1
AY050854 mRNA Translation: AAK92791.1
AY065137 mRNA Translation: AAL38313.1
AY079381 mRNA Translation: AAL85112.1
AY081595 mRNA Translation: AAM10157.1
AY084928 mRNA Translation: AAM61490.1
Z34257 mRNA Translation: CAA84015.1
PIRiS37271
RefSeqiNP_001030831.1, NM_001035754.1 [P41127-1]
NP_001327179.1, NM_001339393.1 [P41127-1]
NP_001327180.1, NM_001339394.1 [P41127-1]
NP_190470.1, NM_114760.4 [P41127-1]
NP_850672.1, NM_180341.3 [P41127-1]
UniGeneiAt.22360

3D structure databases

ProteinModelPortaliP41127
SMRiP41127
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi9380, 3 interactors
IntActiP41127, 1 interactor
STRINGi3702.AT3G49010.1

PTM databases

iPTMnetiP41127

Proteomic databases

PaxDbiP41127
PRIDEiP41127

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G49010.1; AT3G49010.1; AT3G49010 [P41127-1]
AT3G49010.2; AT3G49010.2; AT3G49010 [P41127-1]
AT3G49010.3; AT3G49010.3; AT3G49010 [P41127-1]
AT3G49010.6; AT3G49010.6; AT3G49010 [P41127-1]
AT3G49010.7; AT3G49010.7; AT3G49010 [P41127-1]
GeneIDi824062
GrameneiAT3G49010.1; AT3G49010.1; AT3G49010 [P41127-1]
AT3G49010.2; AT3G49010.2; AT3G49010 [P41127-1]
AT3G49010.3; AT3G49010.3; AT3G49010 [P41127-1]
AT3G49010.6; AT3G49010.6; AT3G49010 [P41127-1]
AT3G49010.7; AT3G49010.7; AT3G49010 [P41127-1]
KEGGiath:AT3G49010

Organism-specific databases

AraportiAT3G49010
TAIRilocus:2101283 AT3G49010

Phylogenomic databases

eggNOGiKOG3295 Eukaryota
COG4352 LUCA
HOGENOMiHOG000170452
InParanoidiP41127
KOiK02873
OMAiIVVDHRR
OrthoDBiEOG09360OQA
PhylomeDBiP41127

Enzyme and pathway databases

ReactomeiR-ATH-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-ATH-1799339 SRP-dependent cotranslational protein targeting to membrane
R-ATH-72689 Formation of a pool of free 40S subunits
R-ATH-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-ATH-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-ATH-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Miscellaneous databases

PROiPR:P41127

Gene expression databases

ExpressionAtlasiP41127 baseline and differential
GenevisibleiP41127 AT

Family and domain databases

HAMAPiMF_00499 Ribosomal_L13e, 1 hit
InterProiView protein in InterPro
IPR001380 Ribosomal_L13e
IPR018256 Ribosomal_L13e_CS
PANTHERiPTHR11722 PTHR11722, 1 hit
PfamiView protein in Pfam
PF01294 Ribosomal_L13e, 1 hit
PROSITEiView protein in PROSITE
PS01104 RIBOSOMAL_L13E, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiRL131_ARATH
AccessioniPrimary (citable) accession number: P41127
Secondary accession number(s): Q42280, Q8LFC4
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: February 1, 1995
Last modified: April 25, 2018
This is version 133 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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Main funding by: National Institutes of Health

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