UniProtKB - P41058 (RS29B_YEAST)
40S ribosomal protein S29-B
RPS29B
Functioni
Component of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell. The small ribosomal subunit (SSU) binds messenger RNAs (mRNAs) and translates the encoded message by selecting cognate aminoacyl-transfer RNA (tRNA) molecules. The large subunit (LSU) contains the ribosomal catalytic site termed the peptidyl transferase center (PTC), which catalyzes the formation of peptide bonds, thereby polymerizing the amino acids delivered by tRNAs into a polypeptide chain. The nascent polypeptides leave the ribosome through a tunnel in the LSU and interact with protein factors that function in enzymatic processing, targeting, and the membrane insertion of nascent chains at the exit of the ribosomal tunnel.
1 PublicationMiscellaneous
Cofactori
Sites
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Metal bindingi | 21 | ZincSequence analysis | 1 | |
Metal bindingi | 24 | ZincSequence analysis | 1 | |
Metal bindingi | 39 | ZincSequence analysis | 1 | |
Metal bindingi | 42 | ZincSequence analysis | 1 |
GO - Molecular functioni
- structural constituent of ribosome Source: SGD
- zinc ion binding Source: GO_Central
GO - Biological processi
- cytoplasmic translation Source: SGD
Keywordsi
Molecular function | Ribonucleoprotein, Ribosomal protein |
Ligand | Metal-binding, Zinc |
Names & Taxonomyi
Protein namesi | Recommended name: 40S ribosomal protein S29-B1 PublicationAlternative name(s): S36 Small ribosomal subunit protein uS14-B1 Publication YS29 |
Gene namesi | Ordered Locus Names:YDL061C |
Organismi | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) |
Taxonomic identifieri | 559292 [NCBI] |
Taxonomic lineagei | Eukaryota › Fungi › Dikarya › Ascomycota › Saccharomycotina › Saccharomycetes › Saccharomycetales › Saccharomycetaceae › Saccharomyces › |
Proteomesi |
|
Organism-specific databases
SGDi | S000002219, RPS29B |
VEuPathDBi | FungiDB:YDL061C |
Subcellular locationi
Cytoplasm and Cytosol
- Cytoplasm 2 Publications
Cytosol
- cytosol Source: Reactome
- cytosolic small ribosomal subunit Source: SGD
Keywords - Cellular componenti
CytoplasmPTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Initiator methioninei | Removed2 Publications | |||
ChainiPRO_0000131033 | 2 – 56 | 40S ribosomal protein S29-BAdd BLAST | 55 |
Amino acid modifications
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Modified residuei | 25 | PhosphoserineCombined sources | 1 |
Keywords - PTMi
PhosphoproteinProteomic databases
MaxQBi | P41058 |
PaxDbi | P41058 |
PRIDEi | P41058 |
PTM databases
CarbonylDBi | P41058 |
iPTMneti | P41058 |
Interactioni
Subunit structurei
Component of the small ribosomal subunit (SSU). Mature yeast ribosomes consist of a small (40S) and a large (60S) subunit. The 40S small subunit contains 1 molecule of ribosomal RNA (18S rRNA) and 33 different proteins (encoded by 57 genes). The large 60S subunit contains 3 rRNA molecules (25S, 5.8S and 5S rRNA) and 46 different proteins (encoded by 81 genes) (PubMed:9559554, PubMed:22096102).
1 Publication1 PublicationProtein-protein interaction databases
BioGRIDi | 31997, 202 interactors |
DIPi | DIP-5230N |
IntActi | P41058, 8 interactors |
STRINGi | 4932.YDL061C |
Miscellaneous databases
RNActi | P41058, protein |
Structurei
3D structure databases
SMRi | P41058 |
ModBasei | Search... |
PDBe-KBi | Search... |
Miscellaneous databases
EvolutionaryTracei | P41058 |
Family & Domainsi
Sequence similaritiesi
Phylogenomic databases
eggNOGi | KOG3506, Eukaryota |
GeneTreei | ENSGT00940000170141 |
HOGENOMi | CLU_177289_1_1_1 |
InParanoidi | P41058 |
OMAi | HCFREIA |
Family and domain databases
Gene3Di | 4.10.830.10, 1 hit |
InterProi | View protein in InterPro IPR039744, 40S_S29/30S_S14z IPR001209, Ribosomal_S14 IPR043140, Ribosomal_S14/S29 IPR018271, Ribosomal_S14_CS |
PANTHERi | PTHR12010, PTHR12010, 1 hit |
Pfami | View protein in Pfam PF00253, Ribosomal_S14, 1 hit |
PROSITEi | View protein in PROSITE PS00527, RIBOSOMAL_S14, 1 hit |
i Sequence
Sequence statusi: Complete.
: The displayed sequence is further processed into a mature form. Sequence processingi
10 20 30 40 50
MAHENVWFSH PRRFGKGSRQ CRVCSSHTGL VRKYDLNICR QCFREKANDI
GFHKYR
Experimental Info
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Sequence conflicti | 7 | W → G AA sequence (PubMed:18782943).Curated | 1 |
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | D14677 Genomic DNA Translation: BAA03508.1 Z74109 Genomic DNA Translation: CAA98624.1 EF123148 mRNA Translation: ABM97492.1 BK006938 Genomic DNA Translation: DAA11795.1 |
PIRi | S48504 |
RefSeqi | NP_010222.1, NM_001180120.1 |
Genome annotation databases
EnsemblFungii | YDL061C_mRNA; YDL061C; YDL061C |
GeneIDi | 851498 |
KEGGi | sce:YDL061C |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | D14677 Genomic DNA Translation: BAA03508.1 Z74109 Genomic DNA Translation: CAA98624.1 EF123148 mRNA Translation: ABM97492.1 BK006938 Genomic DNA Translation: DAA11795.1 |
PIRi | S48504 |
RefSeqi | NP_010222.1, NM_001180120.1 |
3D structure databases
Select the link destinations: PDBei RCSB PDBi PDBji Links Updated | PDB entry | Method | Resolution (Å) | Chain | Positions | PDBsum |
4V4B | electron microscopy | 11.70 | AN | 21-56 | [»] | |
4V92 | electron microscopy | 3.70 | d | 5-56 | [»] | |
SMRi | P41058 | |||||
ModBasei | Search... | |||||
PDBe-KBi | Search... |
Protein-protein interaction databases
BioGRIDi | 31997, 202 interactors |
DIPi | DIP-5230N |
IntActi | P41058, 8 interactors |
STRINGi | 4932.YDL061C |
PTM databases
CarbonylDBi | P41058 |
iPTMneti | P41058 |
Proteomic databases
MaxQBi | P41058 |
PaxDbi | P41058 |
PRIDEi | P41058 |
Genome annotation databases
EnsemblFungii | YDL061C_mRNA; YDL061C; YDL061C |
GeneIDi | 851498 |
KEGGi | sce:YDL061C |
Organism-specific databases
SGDi | S000002219, RPS29B |
VEuPathDBi | FungiDB:YDL061C |
Phylogenomic databases
eggNOGi | KOG3506, Eukaryota |
GeneTreei | ENSGT00940000170141 |
HOGENOMi | CLU_177289_1_1_1 |
InParanoidi | P41058 |
OMAi | HCFREIA |
Miscellaneous databases
EvolutionaryTracei | P41058 |
PROi | PR:P41058 |
RNActi | P41058, protein |
Family and domain databases
Gene3Di | 4.10.830.10, 1 hit |
InterProi | View protein in InterPro IPR039744, 40S_S29/30S_S14z IPR001209, Ribosomal_S14 IPR043140, Ribosomal_S14/S29 IPR018271, Ribosomal_S14_CS |
PANTHERi | PTHR12010, PTHR12010, 1 hit |
Pfami | View protein in Pfam PF00253, Ribosomal_S14, 1 hit |
PROSITEi | View protein in PROSITE PS00527, RIBOSOMAL_S14, 1 hit |
MobiDBi | Search... |
Entry informationi
Entry namei | RS29B_YEAST | |
Accessioni | P41058Primary (citable) accession number: P41058 Secondary accession number(s): A2TBP5, D6VRT5, P05761 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | February 1, 1995 |
Last sequence update: | January 23, 2007 | |
Last modified: | February 23, 2022 | |
This is version 164 of the entry and version 3 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Fungal Protein Annotation Program |
Miscellaneousi
Keywords - Technical termi
3D-structure, Direct protein sequencing, Reference proteomeDocuments
- Yeast
Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD - Yeast chromosome IV
Yeast (Saccharomyces cerevisiae) chromosome IV: entries and gene names - Ribosomal proteins
Ribosomal proteins families and list of entries - PDB cross-references
Index of Protein Data Bank (PDB) cross-references - SIMILARITY comments
Index of protein domains and families