UniProtKB - P39408 (YJJV_ECOLI)
Protein
Uncharacterized metal-dependent hydrolase YjjV
Gene
yjjV
Organism
Escherichia coli (strain K12)
Status
Functioni
Cofactori
a divalent metal cation1 PublicationNote: Binds 2 divalent metal cations per subunit.1 Publication
Sites
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Metal bindingi | 9 | Divalent metal cation 11 Publication | 1 | |
Metal bindingi | 11 | Divalent metal cation 11 Publication | 1 | |
Metal bindingi | 97 | Divalent metal cation 11 Publication | 1 | |
Metal bindingi | 97 | Divalent metal cation 21 Publication | 1 | |
Metal bindingi | 133 | Divalent metal cation 21 Publication | 1 | |
Metal bindingi | 157 | Divalent metal cation 21 Publication | 1 | |
Metal bindingi | 207 | Divalent metal cation 11 Publication | 1 |
GO - Molecular functioni
- endodeoxyribonuclease activity, producing 5'-phosphomonoesters Source: InterPro
- metal ion binding Source: UniProtKB-KW
Keywordsi
Molecular function | Hydrolase |
Ligand | Metal-binding |
Enzyme and pathway databases
BioCyci | EcoCyc:G7952-MONOMER |
Names & Taxonomyi
Protein namesi | |
Gene namesi | Name:yjjV Ordered Locus Names:b4378, JW4341 |
Organismi | Escherichia coli (strain K12) |
Taxonomic identifieri | 83333 [NCBI] |
Taxonomic lineagei | Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacterales › Enterobacteriaceae › Escherichia › |
Proteomesi |
|
PTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
ChainiPRO_0000201999 | 1 – 259 | Uncharacterized metal-dependent hydrolase YjjVAdd BLAST | 259 |
Proteomic databases
jPOSTi | P39408 |
PaxDbi | P39408 |
PRIDEi | P39408 |
Interactioni
Binary interactionsi
P39408
With | #Exp. | IntAct |
---|---|---|
tufA [P0CE47] | 2 | EBI-561387,EBI-301077 |
Protein-protein interaction databases
BioGRIDi | 4261644, 70 interactors |
DIPi | DIP-12661N |
IntActi | P39408, 4 interactors |
STRINGi | 511145.b4378 |
Structurei
Secondary structure
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details3D structure databases
SMRi | P39408 |
ModBasei | Search... |
PDBe-KBi | Search... |
Miscellaneous databases
EvolutionaryTracei | P39408 |
Family & Domainsi
Sequence similaritiesi
Phylogenomic databases
eggNOGi | COG0084, Bacteria |
HOGENOMi | CLU_031506_0_1_6 |
InParanoidi | P39408 |
PhylomeDBi | P39408 |
Family and domain databases
CDDi | cd01310, TatD_DNAse, 1 hit |
InterProi | View protein in InterPro IPR018228, DNase_TatD-rel_CS IPR032466, Metal_Hydrolase IPR001130, TatD_family |
Pfami | View protein in Pfam PF01026, TatD_DNase, 1 hit |
PIRSFi | PIRSF005902, DNase_TatD, 1 hit |
SUPFAMi | SSF51556, SSF51556, 1 hit |
PROSITEi | View protein in PROSITE PS01137, TATD_1, 1 hit PS01090, TATD_2, 1 hit PS01091, TATD_3, 1 hit |
i Sequence
Sequence statusi: Complete.
P39408-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MICRFIDTHC HFDFPPFSGD EEASLQRAAQ AGVGKIIVPA TEAENFARVL
60 70 80 90 100
ALAENYQPLY AALGLHPGML EKHSDVSLEQ LQQALERRPA KVVAVGEIGL
110 120 130 140 150
DLFGDDPQFE RQQWLLDEQL KLAKRYDLPV ILHSRRTHDK LAMHLKRHDL
160 170 180 190 200
PRTGVVHGFS GSLQQAERFV QLGYKIGVGG TITYPRASKT RDVIAKLPLA
210 220 230 240 250
SLLLETDAPD MPLNGFQGQP NRPEQAARVF AVLCELRREP ADEIAQALLN
NTYTLFNVP
Sequence cautioni
The sequence AAA97274 differs from that shown. Reason: Erroneous initiation. Truncated N-terminus.Curated
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | U14003 Genomic DNA Translation: AAA97274.1 Different initiation. U00096 Genomic DNA Translation: AAC77331.2 AP009048 Genomic DNA Translation: BAE78367.1 |
PIRi | S56602 |
RefSeqi | WP_000563040.1, NZ_LN832404.1 YP_026291.2, NC_000913.3 |
Genome annotation databases
EnsemblBacteriai | AAC77331; AAC77331; b4378 BAE78367; BAE78367; BAE78367 |
GeneIDi | 2847741 |
KEGGi | ecj:JW4341 eco:b4378 |
PATRICi | fig|511145.12.peg.4524 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | U14003 Genomic DNA Translation: AAA97274.1 Different initiation. U00096 Genomic DNA Translation: AAC77331.2 AP009048 Genomic DNA Translation: BAE78367.1 |
PIRi | S56602 |
RefSeqi | WP_000563040.1, NZ_LN832404.1 YP_026291.2, NC_000913.3 |
3D structure databases
Select the link destinations: PDBei RCSB PDBi PDBji Links Updated | PDB entry | Method | Resolution (Å) | Chain | Positions | PDBsum |
1ZZM | X-ray | 1.80 | A | 1-259 | [»] | |
SMRi | P39408 | |||||
ModBasei | Search... | |||||
PDBe-KBi | Search... |
Protein-protein interaction databases
BioGRIDi | 4261644, 70 interactors |
DIPi | DIP-12661N |
IntActi | P39408, 4 interactors |
STRINGi | 511145.b4378 |
Proteomic databases
jPOSTi | P39408 |
PaxDbi | P39408 |
PRIDEi | P39408 |
Genome annotation databases
EnsemblBacteriai | AAC77331; AAC77331; b4378 BAE78367; BAE78367; BAE78367 |
GeneIDi | 2847741 |
KEGGi | ecj:JW4341 eco:b4378 |
PATRICi | fig|511145.12.peg.4524 |
Organism-specific databases
EchoBASEi | EB2483 |
Phylogenomic databases
eggNOGi | COG0084, Bacteria |
HOGENOMi | CLU_031506_0_1_6 |
InParanoidi | P39408 |
PhylomeDBi | P39408 |
Enzyme and pathway databases
BioCyci | EcoCyc:G7952-MONOMER |
Miscellaneous databases
EvolutionaryTracei | P39408 |
PROi | PR:P39408 |
Family and domain databases
CDDi | cd01310, TatD_DNAse, 1 hit |
InterProi | View protein in InterPro IPR018228, DNase_TatD-rel_CS IPR032466, Metal_Hydrolase IPR001130, TatD_family |
Pfami | View protein in Pfam PF01026, TatD_DNase, 1 hit |
PIRSFi | PIRSF005902, DNase_TatD, 1 hit |
SUPFAMi | SSF51556, SSF51556, 1 hit |
PROSITEi | View protein in PROSITE PS01137, TATD_1, 1 hit PS01090, TATD_2, 1 hit PS01091, TATD_3, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | YJJV_ECOLI | |
Accessioni | P39408Primary (citable) accession number: P39408 Secondary accession number(s): P78143, Q2M5T9 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | February 1, 1995 |
Last sequence update: | November 1, 1995 | |
Last modified: | April 7, 2021 | |
This is version 149 of the entry and version 2 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Prokaryotic Protein Annotation Program |
Miscellaneousi
Keywords - Technical termi
3D-structure, Reference proteomeDocuments
- PDB cross-references
Index of Protein Data Bank (PDB) cross-references - SIMILARITY comments
Index of protein domains and families