UniProtKB - P39270 (YJDF_ECOLI)
Protein
Inner membrane protein YjdF
Gene
yjdF
Organism
Escherichia coli (strain K12)
Status
Names & Taxonomyi
Protein namesi | Recommended name: Inner membrane protein YjdF |
Gene namesi | Name:yjdF Ordered Locus Names:b4121, JW4082 |
Organismi | Escherichia coli (strain K12) |
Taxonomic identifieri | 83333 [NCBI] |
Taxonomic lineagei | Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacterales › Enterobacteriaceae › Escherichia › |
Proteomesi |
|
Subcellular locationi
Topology
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Topological domaini | 1 – 7 | PeriplasmicSequence analysis | 7 | |
Transmembranei | 8 – 28 | HelicalSequence analysisAdd BLAST | 21 | |
Topological domaini | 29 – 31 | CytoplasmicSequence analysis | 3 | |
Transmembranei | 32 – 52 | HelicalSequence analysisAdd BLAST | 21 | |
Topological domaini | 53 – 55 | PeriplasmicSequence analysis | 3 | |
Transmembranei | 56 – 76 | HelicalSequence analysisAdd BLAST | 21 | |
Topological domaini | 77 – 131 | CytoplasmicSequence analysisAdd BLAST | 55 | |
Transmembranei | 132 – 152 | HelicalSequence analysisAdd BLAST | 21 | |
Topological domaini | 153 – 177 | PeriplasmicSequence analysisAdd BLAST | 25 | |
Transmembranei | 178 – 198 | HelicalSequence analysisAdd BLAST | 21 | |
Topological domaini | 199 – 209 | CytoplasmicSequence analysisAdd BLAST | 11 |
GO - Cellular componenti
- integral component of membrane Source: UniProtKB-KW
- plasma membrane Source: EcoCyc
Keywords - Cellular componenti
Cell inner membrane, Cell membrane, MembranePTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
ChainiPRO_0000169729 | 1 – 209 | Inner membrane protein YjdFAdd BLAST | 209 |
Proteomic databases
PaxDbi | P39270 |
PRIDEi | P39270 |
Interactioni
Protein-protein interaction databases
BioGRIDi | 4262151, 10 interactors |
STRINGi | 511145.b4121 |
Family & Domainsi
Keywords - Domaini
Transmembrane, Transmembrane helixPhylogenomic databases
eggNOGi | COG3647, Bacteria |
HOGENOMi | CLU_087528_0_0_6 |
InParanoidi | P39270 |
PhylomeDBi | P39270 |
Family and domain databases
InterProi | View protein in InterPro IPR014509, UCP020606 |
Pfami | View protein in Pfam PF09997, DUF2238, 1 hit |
PIRSFi | PIRSF020606, UCP020606, 1 hit |
i Sequence
Sequence statusi: Complete.
P39270-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MTRTLKPLIL NTSALTLTLI LIYTGISAHD KLTWLMEVTP VIIVVQLLLA
60 70 80 90 100
TARRYPLTPL LYTLIFLHAI ILMVGGQYTY AKVPVGFEVQ EWLGLSRNPY
110 120 130 140 150
DKLGHFFQGL VPALVAREIL VRGMYVRGRK MVAFLVCCVA LAISAMYELI
160 170 180 190 200
EWWAALAMGQ GADDFLGTQG DQWDTQSDMF CALLGALTTV IFLARFHCRQ
LRRFGLITG
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | U14003 Genomic DNA Translation: AAA97021.1 U00096 Genomic DNA Translation: AAC77082.1 AP009048 Genomic DNA Translation: BAE78123.1 M27058 Genomic DNA No translation available. |
PIRi | S56350 |
RefSeqi | NP_418545.1, NC_000913.3 WP_000198773.1, NZ_SSZK01000018.1 |
Genome annotation databases
EnsemblBacteriai | AAC77082; AAC77082; b4121 BAE78123; BAE78123; BAE78123 |
GeneIDi | 948634 |
KEGGi | ecj:JW4082 eco:b4121 |
PATRICi | fig|1411691.4.peg.2579 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | U14003 Genomic DNA Translation: AAA97021.1 U00096 Genomic DNA Translation: AAC77082.1 AP009048 Genomic DNA Translation: BAE78123.1 M27058 Genomic DNA No translation available. |
PIRi | S56350 |
RefSeqi | NP_418545.1, NC_000913.3 WP_000198773.1, NZ_SSZK01000018.1 |
3D structure databases
ModBasei | Search... |
SWISS-MODEL-Workspacei | Submit a new modelling project... |
Protein-protein interaction databases
BioGRIDi | 4262151, 10 interactors |
STRINGi | 511145.b4121 |
Proteomic databases
PaxDbi | P39270 |
PRIDEi | P39270 |
Genome annotation databases
EnsemblBacteriai | AAC77082; AAC77082; b4121 BAE78123; BAE78123; BAE78123 |
GeneIDi | 948634 |
KEGGi | ecj:JW4082 eco:b4121 |
PATRICi | fig|1411691.4.peg.2579 |
Organism-specific databases
EchoBASEi | EB2356 |
Phylogenomic databases
eggNOGi | COG3647, Bacteria |
HOGENOMi | CLU_087528_0_0_6 |
InParanoidi | P39270 |
PhylomeDBi | P39270 |
Enzyme and pathway databases
BioCyci | EcoCyc:G7825-MONOMER |
Miscellaneous databases
PROi | PR:P39270 |
Family and domain databases
InterProi | View protein in InterPro IPR014509, UCP020606 |
Pfami | View protein in Pfam PF09997, DUF2238, 1 hit |
PIRSFi | PIRSF020606, UCP020606, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | YJDF_ECOLI | |
Accessioni | P39270Primary (citable) accession number: P39270 Secondary accession number(s): Q2M6I3 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | February 1, 1995 |
Last sequence update: | February 1, 1995 | |
Last modified: | December 2, 2020 | |
This is version 125 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Prokaryotic Protein Annotation Program |