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Protein

Uncharacterized protein YchO

Gene

ychO

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Biological processi

  • entry into host cell Source: GO_Central
  • pathogenesis Source: GO_Central

Enzyme and pathway databases

BioCyciEcoCyc:EG12405-MONOMER

Protein family/group databases

TCDBi1.B.54.1.9 the intimin/invasin (int/inv) or autotransporter-3 (at-3) family

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YchO
Gene namesi
Name:ychO
Synonyms:ychP
Ordered Locus Names:b1220, JW1211
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12405 ychO

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Periplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 24Sequence analysisAdd BLAST24
ChainiPRO_000021183225 – 464Uncharacterized protein YchOAdd BLAST440

Proteomic databases

PaxDbiP39165
PRIDEiP39165

Interactioni

Protein-protein interaction databases

BioGridi4263269, 168 interactors
IntActiP39165, 7 interactors
STRINGi316385.ECDH10B_1279

Structurei

3D structure databases

ProteinModelPortaliP39165
SMRiP39165
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the intimin/invasin family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4105ID0 Bacteria
ENOG410XSN7 LUCA
HOGENOMiHOG000119789
InParanoidiP39165

Family and domain databases

Gene3Di2.40.160.160, 1 hit
InterProiView protein in InterPro
IPR024519 IAT_beta
IPR038177 IAT_beta_sf
PfamiView protein in Pfam
PF11924 IAT_beta, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P39165-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSRFVPRIIP FYLLLLVAGG TANAQSTFEQ KAANPFDNNN DGLPDLGMAP
60 70 80 90 100
ENHDGEKHFA EIVKDFGETS MNDNGLDTGE QAKAFALGKV RDALSQQVNQ
110 120 130 140 150
HVESWLSPWG NASVDVKVDN EGHFTGSRGS WFVPLQDNDR YLTWSQLGLT
160 170 180 190 200
QQDNGLVSNV GVGQRWARGN WLVGYNTFYD NLLDENLQRA GFGAEAWGEY
210 220 230 240 250
LRLSANFYQP FAAWHEQTAT QEQRMARGYD LTARMRMPFY QHLNTSVSLE
260 270 280 290 300
QYFGDRVDLF NSGTGYHNPV ALSLGLNYTP VPLVTVTAQH KQGESGENQN
310 320 330 340 350
NLGLNLNYRF GVPLKKQLSA GEVAESQSLR GSRYDNPQRN NLPTLEYRQR
360 370 380 390 400
KTLTVFLATP PWDLKPGETV PLKLQIRSRY GIRQLIWQGD TQILSLTPGA
410 420 430 440 450
QANSAEGWTL IMPDWQNGEG ASNHWRLSVV VEDNQGQRVS SNEITLTLVE
460
PFDALSNDEL RWEP
Length:464
Mass (Da):52,100
Last modified:June 26, 2007 - v3
Checksum:iFF826965DE18B630
GO

Sequence cautioni

The sequence X69189 differs from that shown. Reason: Frameshift at position 445.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA Translation: AAC74304.2
AP009048 Genomic DNA Translation: BAA36088.1
L28709 Genomic DNA No translation available.
X13360 Genomic DNA No translation available.
M24910 Genomic DNA No translation available.
X69189 Genomic DNA No translation available.
PIRiA64869
RefSeqiNP_415738.2, NC_000913.3
WP_000086217.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC74304; AAC74304; b1220
BAA36088; BAA36088; BAA36088
GeneIDi945801
KEGGiecj:JW1211
eco:b1220
PATRICifig|1411691.4.peg.1062

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA Translation: AAC74304.2
AP009048 Genomic DNA Translation: BAA36088.1
L28709 Genomic DNA No translation available.
X13360 Genomic DNA No translation available.
M24910 Genomic DNA No translation available.
X69189 Genomic DNA No translation available.
PIRiA64869
RefSeqiNP_415738.2, NC_000913.3
WP_000086217.1, NZ_LN832404.1

3D structure databases

ProteinModelPortaliP39165
SMRiP39165
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4263269, 168 interactors
IntActiP39165, 7 interactors
STRINGi316385.ECDH10B_1279

Protein family/group databases

TCDBi1.B.54.1.9 the intimin/invasin (int/inv) or autotransporter-3 (at-3) family

Proteomic databases

PaxDbiP39165
PRIDEiP39165

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74304; AAC74304; b1220
BAA36088; BAA36088; BAA36088
GeneIDi945801
KEGGiecj:JW1211
eco:b1220
PATRICifig|1411691.4.peg.1062

Organism-specific databases

EchoBASEiEB2305
EcoGeneiEG12405 ychO

Phylogenomic databases

eggNOGiENOG4105ID0 Bacteria
ENOG410XSN7 LUCA
HOGENOMiHOG000119789
InParanoidiP39165

Enzyme and pathway databases

BioCyciEcoCyc:EG12405-MONOMER

Miscellaneous databases

PROiPR:P39165

Family and domain databases

Gene3Di2.40.160.160, 1 hit
InterProiView protein in InterPro
IPR024519 IAT_beta
IPR038177 IAT_beta_sf
PfamiView protein in Pfam
PF11924 IAT_beta, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiYCHO_ECOLI
AccessioniPrimary (citable) accession number: P39165
Secondary accession number(s): P46124, P76022
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: June 26, 2007
Last modified: November 7, 2018
This is version 105 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
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Main funding by: National Institutes of Health

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