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UniProtKB - P39134 (PRKA_BACSU)

Entry version 107 (18 Sep 2019)
Sequence version 1 (01 Feb 1995)
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Protein

Protein PrkA

Gene

prkA

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

More...BioCyci		BSUB:BSU08970-MONOMER

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Protein PrkA
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:prkA
Ordered Locus Names:BSU08970
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiBacillus subtilis (strain 168)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri224308 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteria › Firmicutes › Bacilli › Bacillales › Bacillaceae › Bacillus ›
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000001570 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00000585751 – 631Protein PrkAAdd BLAST631

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...PaxDbi		P39134

PRoteomics IDEntifications database

More...PRIDEi		P39134

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...STRINGi		224308.BSU08970

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the PrkA family.Curated

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		ENOG4105CYN Bacteria
COG2766 LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		HOG000260080

InParanoid: Eukaryotic Ortholog Groups

More...InParanoidi		P39134

KEGG Orthology (KO)

More...KOi		K07180

Identification of Orthologs from Complete Genome Data

More...OMAi		DFYGMED

Database for complete collections of gene phylogenies

More...PhylomeDBi		P39134

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR027417 P-loop_NTPase
IPR013153 Prk_AAA_dom
IPR010650 PrkA_C_dom
IPR016230 Ser_kinase_PrkA

Pfam protein domain database

More...Pfami		View protein in Pfam
PF08298 AAA_PrkA, 1 hit
PF06798 PrkA, 1 hit

PIRSF; a whole-protein classification database

More...PIRSFi		PIRSF000549 Ser_prot_kin, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...SMARTi		View protein in SMART
SM00763 AAA_PrkA, 1 hit

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF52540 SSF52540, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

P39134-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MDILKKIEKY REEEQRLKWE GTFADYLEII KENPMVAQSA HSRVFNMIKD 
        60         70         80         90        100
SGIEEIDGRK KYSFFDRELF GLEESLERLV EEYFHPAAKR LDVRKRILLL 
       110        120        130        140        150
MGPVSGGKST LVTMLKKGLE AYTLTDNGAV YAIKGCPMHE DPLHLIPHHL 
       160        170        180        190        200
RDDFYREYGI RIEGSLSPLN VMRLEEEYGG RIEDVKVERI FFSEDKRTGI 
       210        220        230        240        250
GTFSPSDPKS QDIADLTGSI DFSTIAEYGS ESDPRAYRFD GELNKANRGM 
       260        270        280        290        300
MEFQEMLKCD EKFLWHLLSL TQEGNFKAGR FALISADELI VAHTNETEYR 
       310        320        330        340        350
SFISNKKNEA LHSRIIVMPV PYNLKVSEEE RIYEKMIAES DVADVHIAPH 
       360        370        380        390        400
TLKVAAMFSI LTRLKEPKRS DIDLVKKMRL YDGESVEGYN SVDVEDMKKE 
       410        420        430        440        450
YNDEGMSGID PRYVINRISS TIIRKNMESI NSLDVLRSLK EGLDQHPSIS 
       460        470        480        490        500
SEDRERYLNF ISAARKEYDD IAKKEVQKAF VYSYEESAKT LMDNYLDNVE 
       510        520        530        540        550
AYCNKNKLRD PLTGEEMNPD EKLMRSIEEQ IGISENAKKA FREEILIRIS 
       560        570        580        590        600
AYARKGKRFD YNSHERLREA IQKKLFADLK DVVKITTSTK TPDEQQLKKV 
       610        620        630 
NEVVARLIDE HGYNSTSANE LLKYVGSLLN R
Length:631
Mass (Da):72,888
Last modified:February 1, 1995 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i874AD03B0282FB68
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
X79388 Genomic DNA Translation: CAA55933.1
AL009126 Genomic DNA Translation: CAB12725.1

Protein sequence database of the Protein Information Resource

More...PIRi		JC4602

NCBI Reference Sequences

More...RefSeqi		NP_388778.1, NC_000964.3
WP_003233433.1, NZ_JNCM01000035.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...EnsemblBacteriai		CAB12725; CAB12725; BSU08970

Database of genes from NCBI RefSeq genomes

More...GeneIDi		939250

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		bsu:BSU08970

Pathosystems Resource Integration Center (PATRIC)

More...PATRICi		fig|224308.179.peg.969

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X79388 Genomic DNA Translation: CAA55933.1
AL009126 Genomic DNA Translation: CAB12725.1
PIRiJC4602
RefSeqiNP_388778.1, NC_000964.3
WP_003233433.1, NZ_JNCM01000035.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Protein-protein interaction databases

STRINGi224308.BSU08970

Proteomic databases

PaxDbiP39134
PRIDEiP39134

Protocols and materials databases

The DNASU plasmid repository

More...DNASUi		939250
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB12725; CAB12725; BSU08970
GeneIDi939250
KEGGibsu:BSU08970
PATRICifig|224308.179.peg.969

Phylogenomic databases

eggNOGiENOG4105CYN Bacteria
COG2766 LUCA
HOGENOMiHOG000260080
InParanoidiP39134
KOiK07180
OMAiDFYGMED
PhylomeDBiP39134

Enzyme and pathway databases

BioCyciBSUB:BSU08970-MONOMER

Family and domain databases

InterProiView protein in InterPro
IPR027417 P-loop_NTPase
IPR013153 Prk_AAA_dom
IPR010650 PrkA_C_dom
IPR016230 Ser_kinase_PrkA
PfamiView protein in Pfam
PF08298 AAA_PrkA, 1 hit
PF06798 PrkA, 1 hit
PIRSFiPIRSF000549 Ser_prot_kin, 1 hit
SMARTiView protein in SMART
SM00763 AAA_PrkA, 1 hit
SUPFAMiSSF52540 SSF52540, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiPRKA_BACSU
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: P39134
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: February 1, 1995
Last modified: September 18, 2019
This is version 107 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
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