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UniProtKB - P38902 (RPB11_YEAST)

Entry version 191 (02 Dec 2020)
Sequence version 1 (01 Feb 1995)
Previous versions | rss
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Protein

DNA-directed RNA polymerase II subunit RPB11

Gene

RPB11

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB11 is part of the core element with the central large cleft. Seems to be involved transcript termination.1 Publication

Miscellaneous

Present with 4280 molecules/cell in log phase SD medium.1 Publication

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

GO - Biological processi

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Biological processTranscription

Enzyme and pathway databases

Reactome - a knowledgebase of biological pathways and processes

More...Reactomei		R-SCE-113418, Formation of the Early Elongation Complex
R-SCE-674695, RNA Polymerase II Pre-transcription Events
R-SCE-6781823, Formation of TC-NER Pre-Incision Complex
R-SCE-6782135, Dual incision in TC-NER
R-SCE-6782210, Gap-filling DNA repair synthesis and ligation in TC-NER
R-SCE-6796648, TP53 Regulates Transcription of DNA Repair Genes
R-SCE-6807505, RNA polymerase II transcribes snRNA genes
R-SCE-72086, mRNA Capping
R-SCE-73776, RNA Polymerase II Promoter Escape
R-SCE-73779, RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
R-SCE-75953, RNA Polymerase II Transcription Initiation
R-SCE-75955, RNA Polymerase II Transcription Elongation
R-SCE-76042, RNA Polymerase II Transcription Initiation And Promoter Clearance
R-SCE-77075, RNA Pol II CTD phosphorylation and interaction with CE
R-SCE-9018519, Estrogen-dependent gene expression

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
DNA-directed RNA polymerase II subunit RPB11
Short name:
RNA polymerase II subunit B11
Alternative name(s):
B13.6
DNA-directed RNA polymerase II 13.6 kDa polypeptide
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:RPB11
Ordered Locus Names:YOL005C
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri559292 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Fungi › Dikarya › Ascomycota › Saccharomycotina › Saccharomycetes › Saccharomycetales › Saccharomycetaceae › Saccharomyces ›
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000002311 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome XV

Organism-specific databases

Eukaryotic Pathogen and Host Database Resources

More...EuPathDBi		FungiDB:YOL005C

Saccharomyces Genome Database

More...SGDi		S000005365, RPB11

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

DNA-directed RNA polymerase, Nucleus

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

Mutagenesis

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/manual/pathology%5Fand%5Fbiotech%5Fsection">'Pathology and Biotech'</a> section describes the effect of the experimental mutation of one or more amino acid(s) on the biological properties of the protein.<p><a href='/help/mutagen' target='_top'>More...</a></p>Mutagenesisi108E → G or V: Transcript termination readthrough. 1 Publication1
Mutagenesisi108E → K: Transcript termination readthrough. Lethal. 1 Publication1
Mutagenesisi111L → P: Transcript termination readthrough. 1 Publication1
Mutagenesisi114L → P: Transcript termination readthrough. 1 Publication1

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00001493151 – 120DNA-directed RNA polymerase II subunit RPB11Add BLAST120

Proteomic databases

MaxQB - The MaxQuant DataBase

More...MaxQBi		P38902

PaxDb, a database of protein abundance averages across all three domains of life

More...PaxDbi		P38902

PRoteomics IDEntifications database

More...PRIDEi		P38902

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...iPTMneti		P38902

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction%5Fsection">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function%5Fsection">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Component of the RNA polymerase II (Pol II) complex consisting of 12 subunits.

3 Publications

<p>This subsection of the '<a href="http://www.uniprot.org/help/interaction%5Fsection">Interaction</a>' section provides information about binary protein-protein interactions. The data presented in this section are a quality-filtered subset of binary interactions automatically derived from the <a href="https://www.ebi.ac.uk/intact/">IntAct database</a>. It is updated at every <a href="http://www.uniprot.org/help/synchronization">UniProt release</a>.<p><a href='/help/binary_interactions' target='_top'>More...</a></p>Binary interactionsi

Hide details

GO - Molecular functioni

Complete GO annotation on QuickGO ...

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGRID)

More...BioGRIDi		34399, 390 interactors

ComplexPortal: manually curated resource of macromolecular complexes

More...ComplexPortali		CPX-2662, DNA-directed RNA polymerase II complex

Database of interacting proteins

More...DIPi		DIP-937N

Protein interaction database and analysis system

More...IntActi		P38902, 21 interactors

Molecular INTeraction database

More...MINTi		P38902

STRING: functional protein association networks

More...STRINGi		4932.YOL005C

Miscellaneous databases

RNAct, Protein-RNA interaction predictions for model organisms.

More...RNActi		P38902, protein

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

Secondary structure

1120
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...SMRi		P38902

Database of comparative protein structure models

More...ModBasei		Search...

Protein Data Bank in Europe - Knowledge Base

More...PDBe-KBi		Search...

Miscellaneous databases

Relative evolutionary importance of amino acids within a protein sequence

More...EvolutionaryTracei		P38902

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the archaeal RpoL/eukaryotic RPB11/RPC19 RNA polymerase subunit family.Curated

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		KOG4392, Eukaryota

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		CLU_090381_2_1_1

InParanoid: Eukaryotic Ortholog Groups

More...InParanoidi		P38902

Identification of Orthologs from Complete Genome Data

More...OMAi		HKFVLRI

Family and domain databases

Conserved Domains Database

More...CDDi		cd06926, RNAP_II_RPB11, 1 hit

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		3.30.1360.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR037685, RBP11
IPR036603, RBP11-like
IPR009025, RBP11-like_dimer
IPR008193, RNA_pol_Rpb11_13-16kDa_CS

Pfam protein domain database

More...Pfami		View protein in Pfam
PF13656, RNA_pol_L_2, 1 hit

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF55257, SSF55257, 1 hit

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS01154, RNA_POL_L_13KD, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

P38902-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MNAPDRFELF LLGEGESKLK IDPDTKAPNA VVITFEKEDH TLGNLIRAEL 
        60         70         80         90        100
LNDRKVLFAA YKVEHPFFAR FKLRIQTTEG YDPKDALKNA CNSIINKLGA 
       110        120
LKTNFETEWN LQTLAADDAF
Length:120
Mass (Da):13,616
Last modified:February 1, 1995 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iA98D109C5FF8E356
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
S62624 Genomic DNA Translation: AAB27135.1
Z74747 Genomic DNA Translation: CAA99004.1
AY557998 Genomic DNA Translation: AAS56324.1
BK006948 Genomic DNA Translation: DAA10778.1

Protein sequence database of the Protein Information Resource

More...PIRi		S58933

NCBI Reference Sequences

More...RefSeqi		NP_014638.1, NM_001183259.1

Genome annotation databases

Ensembl fungal genome annotation project

More...EnsemblFungii		YOL005C_mRNA; YOL005C; YOL005C

Database of genes from NCBI RefSeq genomes

More...GeneIDi		854157

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		sce:YOL005C

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
S62624 Genomic DNA Translation: AAB27135.1
Z74747 Genomic DNA Translation: CAA99004.1
AY557998 Genomic DNA Translation: AAS56324.1
BK006948 Genomic DNA Translation: DAA10778.1
PIRiS58933
RefSeqiNP_014638.1, NM_001183259.1

3D structure databases

Select the link destinations:

Protein Data Bank Europe

More...PDBei

Protein Data Bank RCSB

More...RCSB PDBi

Protein Data Bank Japan

More...PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1I3QX-ray3.10K1-120[»]
1I50X-ray2.80K1-120[»]
1I6HX-ray3.30K1-120[»]
1K83X-ray2.80K1-120[»]
1NIKX-ray4.10K1-120[»]
1NT9X-ray4.20K1-120[»]
1PQVX-ray3.80K1-120[»]
1R5UX-ray4.50K1-120[»]
1R9SX-ray4.25K1-120[»]
1R9TX-ray3.50K1-120[»]
1SFOX-ray3.61K1-120[»]
1TWAX-ray3.20K1-120[»]
1TWCX-ray3.00K1-120[»]
1TWFX-ray2.30K1-120[»]
1TWGX-ray3.30K1-120[»]
1TWHX-ray3.40K1-120[»]
1WCMX-ray3.80K1-120[»]
1Y1VX-ray3.80K1-120[»]
1Y1WX-ray4.00K1-120[»]
1Y1YX-ray4.00K1-120[»]
1Y77X-ray4.50K1-120[»]
2B63X-ray3.80K1-120[»]
2B8KX-ray4.15K1-120[»]
2E2HX-ray3.95K1-120[»]
2E2IX-ray3.41K1-120[»]
2E2JX-ray3.50K1-120[»]
2JA5X-ray3.80K1-120[»]
2JA6X-ray4.00K1-120[»]
2JA7X-ray3.80K/W1-120[»]
2JA8X-ray3.80K1-120[»]
2NVQX-ray2.90K1-120[»]
2NVTX-ray3.36K1-120[»]
2NVXX-ray3.60K1-120[»]
2NVYX-ray3.40K1-120[»]
2NVZX-ray4.30K1-120[»]
2R7ZX-ray3.80K1-120[»]
2R92X-ray3.80K1-120[»]
2R93X-ray4.00K1-120[»]
2VUMX-ray3.40K1-120[»]
2YU9X-ray3.40K1-120[»]
3CQZX-ray2.80K1-120[»]
3FKIX-ray3.88K1-120[»]
3GTGX-ray3.78K1-120[»]
3GTJX-ray3.42K1-120[»]
3GTKX-ray3.80K1-120[»]
3GTLX-ray3.38K1-120[»]
3GTMX-ray3.80K1-120[»]
3GTOX-ray4.00K1-120[»]
3GTPX-ray3.90K1-120[»]
3GTQX-ray3.80K1-120[»]
3H3VX-ray4.00L1-120[»]
3HOUX-ray3.20K/W1-120[»]
3HOVX-ray3.50K1-120[»]
3HOWX-ray3.60K1-120[»]
3HOXX-ray3.65K1-120[»]
3HOYX-ray3.40K1-120[»]
3HOZX-ray3.65K1-120[»]
3I4MX-ray3.70K1-120[»]
3I4NX-ray3.90K1-120[»]
3J0Kelectron microscopy36.00K1-120[»]
3J1Nelectron microscopy16.00K1-120[»]
3K1FX-ray4.30K1-120[»]
3K7AX-ray3.80K1-120[»]
3M3YX-ray3.18K1-120[»]
3M4OX-ray3.57K1-120[»]
3PO2X-ray3.30K1-120[»]
3PO3X-ray3.30K1-120[»]
3QT1X-ray4.30K1-120[»]
3RZDX-ray3.30K1-120[»]
3RZOX-ray3.00K1-120[»]
3S14X-ray2.85K1-120[»]
3S15X-ray3.30K1-120[»]
3S16X-ray3.24K1-120[»]
3S17X-ray3.20K1-120[»]
3S1MX-ray3.13K1-120[»]
3S1NX-ray3.10K1-120[»]
3S1QX-ray3.30K1-120[»]
3S1RX-ray3.20K1-120[»]
3S2DX-ray3.20K1-120[»]
3S2HX-ray3.30K1-120[»]
4A3BX-ray3.50K1-120[»]
4A3CX-ray3.50K1-120[»]
4A3DX-ray3.40K1-120[»]
4A3EX-ray3.40K1-120[»]
4A3FX-ray3.50K1-120[»]
4A3GX-ray3.50K1-120[»]
4A3IX-ray3.80K1-120[»]
4A3JX-ray3.70K1-120[»]
4A3KX-ray3.50K1-120[»]
4A3LX-ray3.50K1-120[»]
4A3MX-ray3.90K1-120[»]
4A93X-ray3.40K1-120[»]
4BBRX-ray3.40K1-120[»]
4BBSX-ray3.60K1-120[»]
4BXXX-ray3.28K1-120[»]
4BXZX-ray4.80K1-120[»]
4BY1X-ray3.60K1-120[»]
4BY7X-ray3.15K1-120[»]
4V1Melectron microscopy6.60K1-120[»]
4V1Nelectron microscopy7.80K1-120[»]
4V1Oelectron microscopy9.70K1-120[»]
4X67X-ray4.10K1-120[»]
4X6AX-ray3.96K1-120[»]
4Y52X-ray3.50K1-120[»]
4Y7NX-ray3.30K1-120[»]
5C3EX-ray3.70K1-120[»]
5C44X-ray3.95K1-120[»]
5C4AX-ray4.20K1-120[»]
5C4JX-ray4.00K1-120[»]
5C4XX-ray4.00K1-120[»]
5FMFelectron microscopy6.00K1-115[»]
5FYWelectron microscopy4.35K1-120[»]
5FZ5electron microscopy8.80K1-120[»]
5IP7X-ray3.52K1-115[»]
5IP9X-ray3.90K1-115[»]
5OQJelectron microscopy4.70K1-120[»]
5OQMelectron microscopy5.80K1-120[»]
5OT2X-ray3.20K1-120[»]
5SVAelectron microscopy15.30K1-120[»]
5U5QX-ray3.80K1-120[»]
5VVRelectron microscopy5.80K1-120[»]
5VVSelectron microscopy6.40K1-120[»]
5W4UX-ray3.60K1-120[»]
5W51X-ray3.40K1-120[»]
6BLOX-ray3.40K1-120[»]
6BLPX-ray3.20K1-120[»]
6BM2X-ray3.40K1-120[»]
6BM4X-ray2.95K1-120[»]
6BQFX-ray3.35K1-120[»]
6GYKelectron microscopy5.10K1-120[»]
6GYLelectron microscopy4.80K1-120[»]
6GYMelectron microscopy6.70K1-120[»]
6I84electron microscopy4.40K1-120[»]
6O6Celectron microscopy3.10I1-120[»]
6UPXX-ray3.40K1-120[»]
6UPYX-ray3.40K1-120[»]
6UPZX-ray3.10K1-120[»]
6UQ0X-ray3.56K1-120[»]
6UQ1X-ray3.60K1-120[»]
6UQ2X-ray3.20K1-120[»]
6UQ3X-ray3.47K1-120[»]
SMRiP38902
ModBaseiSearch...
PDBe-KBiSearch...

Protein-protein interaction databases

BioGRIDi34399, 390 interactors
ComplexPortaliCPX-2662, DNA-directed RNA polymerase II complex
DIPiDIP-937N
IntActiP38902, 21 interactors
MINTiP38902
STRINGi4932.YOL005C

PTM databases

iPTMnetiP38902

Proteomic databases

MaxQBiP38902
PaxDbiP38902
PRIDEiP38902

Genome annotation databases

EnsemblFungiiYOL005C_mRNA; YOL005C; YOL005C
GeneIDi854157
KEGGisce:YOL005C

Organism-specific databases

EuPathDBiFungiDB:YOL005C
SGDiS000005365, RPB11

Phylogenomic databases

eggNOGiKOG4392, Eukaryota
HOGENOMiCLU_090381_2_1_1
InParanoidiP38902
OMAiHKFVLRI

Enzyme and pathway databases

ReactomeiR-SCE-113418, Formation of the Early Elongation Complex
R-SCE-674695, RNA Polymerase II Pre-transcription Events
R-SCE-6781823, Formation of TC-NER Pre-Incision Complex
R-SCE-6782135, Dual incision in TC-NER
R-SCE-6782210, Gap-filling DNA repair synthesis and ligation in TC-NER
R-SCE-6796648, TP53 Regulates Transcription of DNA Repair Genes
R-SCE-6807505, RNA polymerase II transcribes snRNA genes
R-SCE-72086, mRNA Capping
R-SCE-73776, RNA Polymerase II Promoter Escape
R-SCE-73779, RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
R-SCE-75953, RNA Polymerase II Transcription Initiation
R-SCE-75955, RNA Polymerase II Transcription Elongation
R-SCE-76042, RNA Polymerase II Transcription Initiation And Promoter Clearance
R-SCE-77075, RNA Pol II CTD phosphorylation and interaction with CE
R-SCE-9018519, Estrogen-dependent gene expression

Miscellaneous databases

EvolutionaryTraceiP38902

Protein Ontology

More...PROi		PR:P38902
RNActiP38902, protein

Family and domain databases

CDDicd06926, RNAP_II_RPB11, 1 hit
Gene3Di3.30.1360.10, 1 hit
InterProiView protein in InterPro
IPR037685, RBP11
IPR036603, RBP11-like
IPR009025, RBP11-like_dimer
IPR008193, RNA_pol_Rpb11_13-16kDa_CS
PfamiView protein in Pfam
PF13656, RNA_pol_L_2, 1 hit
SUPFAMiSSF55257, SSF55257, 1 hit
PROSITEiView protein in PROSITE
PS01154, RNA_POL_L_13KD, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiRPB11_YEAST
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: P38902
Secondary accession number(s): D6W262
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: February 1, 1995
Last modified: December 2, 2020
This is version 191 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

3D-structure, Direct protein sequencing, Reference proteome

Documents

  1. Yeast chromosome XV
    Yeast (Saccharomyces cerevisiae) chromosome XV: entries and gene names
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families
  4. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
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