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UniProtKB - P37645 (YHJG_ECOLI)

Entry version 136 (10 Feb 2021)
Sequence version 3 (24 Nov 2009)
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Protein

AsmA family protein YhjG

Gene

yhjG

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Biological processi

Complete GO annotation on QuickGO ...

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

More...BioCyci		EcoCyc:EG12251-MONOMER

Protein family/group databases

Transport Classification Database

More...TCDBi		9.B.121.1.1, the asma (asma) family

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
AsmA family protein YhjG
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:yhjG
Synonyms:yhjF
Ordered Locus Names:b3524, JW3492
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiEscherichia coli (strain K12)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri83333 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteria › Proteobacteria › Gammaproteobacteria › Enterobacterales › Enterobacteriaceae › Escherichia ›
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000318 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei7 – 27HelicalSequence analysisAdd BLAST21

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Cell membrane, Membrane

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00001695721 – 686AsmA family protein YhjGAdd BLAST686

Proteomic databases

jPOST - Japan Proteome Standard Repository/Database

More...jPOSTi		P37645

PaxDb, a database of protein abundance averages across all three domains of life

More...PaxDbi		P37645

PRoteomics IDEntifications database

More...PRIDEi		P37645

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGRID)

More...BioGRIDi		4262155, 17 interactors

Database of interacting proteins

More...DIPi		DIP-12381N

Protein interaction database and analysis system

More...IntActi		P37645, 2 interactors

STRING: functional protein association networks

More...STRINGi		511145.b3524

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the AsmA family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		COG2982, Bacteria

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		CLU_017234_1_1_6

InParanoid: Eukaryotic Ortholog Groups

More...InParanoidi		P37645

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR007844, AsmA

Pfam protein domain database

More...Pfami		View protein in Pfam
PF05170, AsmA, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

P37645-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSKAGKITAA ISGAFLLLIV VAIILIATFD WNRLKPTINQ KVSAELNRPF 
        60         70         80         90        100
AIRGDLGVVW ERQKQETGWR SWVPWPHVHA EDIILGNPPD IPEVTMVHLP 
       110        120        130        140        150
RVEATLAPLA LLTKTVWLPW IKLEKPDARL IRLSEKNNNW TFNLANDDNK 
       160        170        180        190        200
DANAKPSAWS FRLDNILFDQ GRIAIDDKVS KADLEIFVDP LGKPLPFSEV 
       210        220        230        240        250
TGSKGKADKE KVGDYVFGLK AQGRYNGEPL TGTGKIGGML ALRGEGTPFP 
       260        270        280        290        300
VQADFRSGNT RVAFDGVVND PMKMGGVDLR LKFSGDSLGD LYELTGVLLP 
       310        320        330        340        350
DTPPFETDGR LVAKIDTEKS SVFDYRGFNG RIGDSDIHGS LVYTTGKPRP 
       360        370        380        390        400
KLEGDVESRQ LRLADLGPLI GVDSGKGAEK SKRSEQKKGE KSVQPAGKVL 
       410        420        430        440        450
PYDRFETDKW DVMDADVRFK GRRIEHGSSL PISDLSTHII LKNADLRLQP 
       460        470        480        490        500
LKFGMAGGSI AANIHLEGDK KPMQGRADIQ ARRLKLKELM PDVELMQKTL 
       510        520        530        540        550
GEMNGDAELR GSGNSVAALL GNSNGNLKLL MNDGLVSRNL MEIVGLNVGN 
       560        570        580        590        600
YIVGAIFGDD EVRVNCAAAN LNIANGVARP QIFAFDTENA LINVTGTASF 
       610        620        630        640        650
ASEQLDLTID PESKGIRIIT LRSPLYVRGT FKNPQAGVKA GPLIARGAVA 
       660        670        680 
AALATLVTPA AALLALISPS EGEANQCRTI LSQMKK
Length:686
Mass (Da):74,457
Last modified:November 24, 2009 - v3
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iD56235589B87A678
GO

<p>This subsection of the 'Sequence' section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence AAB18501 differs from that shown. Reason: Frameshift.Curated
The sequence AAB18501 differs from that shown. Reason: Erroneous initiation. Extended N-terminus.Curated
The sequence BAE77770 differs from that shown. Reason: Erroneous initiation. Extended N-terminus.Curated

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
U00039 Genomic DNA Translation: AAB18501.1 Sequence problems.
U00096 Genomic DNA Translation: AAC76549.2
AP009048 Genomic DNA Translation: BAE77770.1 Different initiation.

Protein sequence database of the Protein Information Resource

More...PIRi		G65150

NCBI Reference Sequences

More...RefSeqi		NP_417981.2, NC_000913.3
WP_001296794.1, NZ_STEB01000018.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...EnsemblBacteriai		AAC76549; AAC76549; b3524
BAE77770; BAE77770; BAE77770

Database of genes from NCBI RefSeq genomes

More...GeneIDi		58462377
948043

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		ecj:JW3492
eco:b3524

Pathosystems Resource Integration Center (PATRIC)

More...PATRICi		fig|511145.12.peg.3633

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00039 Genomic DNA Translation: AAB18501.1 Sequence problems.
U00096 Genomic DNA Translation: AAC76549.2
AP009048 Genomic DNA Translation: BAE77770.1 Different initiation.
PIRiG65150
RefSeqiNP_417981.2, NC_000913.3
WP_001296794.1, NZ_STEB01000018.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Protein-protein interaction databases

BioGRIDi4262155, 17 interactors
DIPiDIP-12381N
IntActiP37645, 2 interactors
STRINGi511145.b3524

Protein family/group databases

TCDBi9.B.121.1.1, the asma (asma) family

Proteomic databases

jPOSTiP37645
PaxDbiP37645
PRIDEiP37645

Genome annotation databases

EnsemblBacteriaiAAC76549; AAC76549; b3524
BAE77770; BAE77770; BAE77770
GeneIDi58462377
948043
KEGGiecj:JW3492
eco:b3524
PATRICifig|511145.12.peg.3633

Organism-specific databases

EchoBASE - an integrated post-genomic database for E. coli

More...EchoBASEi		EB2161

Phylogenomic databases

eggNOGiCOG2982, Bacteria
HOGENOMiCLU_017234_1_1_6
InParanoidiP37645

Enzyme and pathway databases

BioCyciEcoCyc:EG12251-MONOMER

Miscellaneous databases

Protein Ontology

More...PROi		PR:P37645

Family and domain databases

InterProiView protein in InterPro
IPR007844, AsmA
PfamiView protein in Pfam
PF05170, AsmA, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiYHJG_ECOLI
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: P37645
Secondary accession number(s): P37644, Q2M7I6
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 1, 1994
Last sequence update: November 24, 2009
Last modified: February 10, 2021
This is version 136 of the entry and version 3 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
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