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UniProtKB - P37180 (HYBB_ECOLI)

Entry version 135 (07 Apr 2021)
Sequence version 2 (29 Aug 2003)
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Protein

Probable Ni/Fe-hydrogenase 2 b-type cytochrome subunit

Gene

hybB

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Probable b-type cytochrome.

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

GO - Biological processi

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Biological processElectron transport, Transport
LigandHeme, Iron, Metal-binding

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

More...BioCyci		EcoCyc:EG11800-MONOMER
MetaCyc:EG11800-MONOMER

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Probable Ni/Fe-hydrogenase 2 b-type cytochrome subunit
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:hybB
Ordered Locus Names:b2995, JW5494
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiEscherichia coli (strain K12)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri83333 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteria › Proteobacteria › Gammaproteobacteria › Enterobacterales › Enterobacteriaceae › Escherichia ›
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000318 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the subcellular compartment where each non-membrane region of a membrane-spanning protein is found.<p><a href='/help/topo_dom' target='_top'>More...</a></p>Topological domaini1 – 11PeriplasmicSequence analysisAdd BLAST11
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei12 – 32HelicalSequence analysisAdd BLAST21
Topological domaini33 – 34CytoplasmicSequence analysis2
Transmembranei35 – 55HelicalSequence analysisAdd BLAST21
Topological domaini56 – 58PeriplasmicSequence analysis3
Transmembranei59 – 79HelicalSequence analysisAdd BLAST21
Topological domaini80 – 90CytoplasmicSequence analysisAdd BLAST11
Transmembranei91 – 111HelicalSequence analysisAdd BLAST21
Topological domaini112 – 133PeriplasmicSequence analysisAdd BLAST22
Transmembranei134 – 154HelicalSequence analysisAdd BLAST21
Topological domaini155 – 168CytoplasmicSequence analysisAdd BLAST14
Transmembranei169 – 189HelicalSequence analysisAdd BLAST21
Topological domaini190 – 207PeriplasmicSequence analysisAdd BLAST18
Transmembranei208 – 228HelicalSequence analysisAdd BLAST21
Topological domaini229 – 249CytoplasmicSequence analysisAdd BLAST21
Transmembranei250 – 270HelicalSequence analysisAdd BLAST21
Topological domaini271 – 281PeriplasmicSequence analysisAdd BLAST11
Transmembranei282 – 302HelicalSequence analysisAdd BLAST21
Topological domaini303 – 333CytoplasmicSequence analysisAdd BLAST31
Transmembranei334 – 354HelicalSequence analysisAdd BLAST21
Topological domaini355PeriplasmicSequence analysis1
Transmembranei356 – 376HelicalSequence analysisAdd BLAST21
Topological domaini377 – 392CytoplasmicSequence analysisAdd BLAST16

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00001593261 – 392Probable Ni/Fe-hydrogenase 2 b-type cytochrome subunitAdd BLAST392

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...PaxDbi		P37180

PRoteomics IDEntifications database

More...PRIDEi		P37180

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGRID)

More...BioGRIDi		4262376, 6 interactors

ComplexPortal: manually curated resource of macromolecular complexes

More...ComplexPortali		CPX-282, Hydrogenase-2 complex

STRING: functional protein association networks

More...STRINGi		511145.b2995

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the NrfD family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		COG5557, Bacteria

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		CLU_049007_0_0_6

InParanoid: Eukaryotic Ortholog Groups

More...InParanoidi		P37180

Database for complete collections of gene phylogenies

More...PhylomeDBi		P37180

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR005614, NrfD_fam

Pfam protein domain database

More...Pfami		View protein in Pfam
PF03916, NrfD, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

P37180-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSHDPQPLGG KIISKPVMIF GPLIVICMLL IVKRLVFGLG SVSDLNGGFP 
        60         70         80         90        100
WGVWIAFDLL IGTGFACGGW ALAWAVYVFN RGQYHPLVRP ALLASLFGYS 
       110        120        130        140        150
LGGLSITIDV GRYWNLPYFY IPGHFNVNSV LFETAVCMTI YIGVMALEFA 
       160        170        180        190        200
PALFERLGWK VSLQRLNKVM FFIIALGALL PTMHQSSMGS LMISAGYKVH 
       210        220        230        240        250
PLWQSYEMLP LFSLLTAFIM GFSIVIFEGS LVQAGLRGNG PDEKSLFVKL 
       260        270        280        290        300
TNTISVLLAI FIVLRFGELI YRDKLSLAFA GDFYSVMFWI EVLLMLFPLV 
       310        320        330        340        350
VLRVAKLRND SRMLFLSALS ALLGCATWRL TYSLVAFNPG GGYAYFPTWE 
       360        370        380        390 
ELLISIGFVA IEICAYIVLI RLLPILPPLK QNDHNRHEAS KA
Length:392
Mass (Da):43,602
Last modified:August 29, 2003 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i8A25CDCB3EDB67FA
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti306 – 307KL → NV in AAA21590 (PubMed:8021226).Curated2
Sequence conflicti306 – 307KL → NV in AAA69162 (PubMed:8021226).Curated2

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
U09177 Genomic DNA Translation: AAA21590.1
U28377 Genomic DNA Translation: AAA69162.1 Sequence problems.
U00096 Genomic DNA Translation: AAC76031.1
AP009048 Genomic DNA Translation: BAE77056.1

Protein sequence database of the Protein Information Resource

More...PIRi		A65086

NCBI Reference Sequences

More...RefSeqi		NP_417469.1, NC_000913.3
WP_000017703.1, NZ_STEB01000001.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...EnsemblBacteriai		AAC76031; AAC76031; b2995
BAE77056; BAE77056; BAE77056

Database of genes from NCBI RefSeq genomes

More...GeneIDi		57729179
948615

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		ecj:JW5494
eco:b2995

Pathosystems Resource Integration Center (PATRIC)

More...PATRICi		fig|1411691.4.peg.3734

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U09177 Genomic DNA Translation: AAA21590.1
U28377 Genomic DNA Translation: AAA69162.1 Sequence problems.
U00096 Genomic DNA Translation: AAC76031.1
AP009048 Genomic DNA Translation: BAE77056.1
PIRiA65086
RefSeqiNP_417469.1, NC_000913.3
WP_000017703.1, NZ_STEB01000001.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Protein-protein interaction databases

BioGRIDi4262376, 6 interactors
ComplexPortaliCPX-282, Hydrogenase-2 complex
STRINGi511145.b2995

Proteomic databases

PaxDbiP37180
PRIDEiP37180

Genome annotation databases

EnsemblBacteriaiAAC76031; AAC76031; b2995
BAE77056; BAE77056; BAE77056
GeneIDi57729179
948615
KEGGiecj:JW5494
eco:b2995
PATRICifig|1411691.4.peg.3734

Organism-specific databases

EchoBASE - an integrated post-genomic database for E. coli

More...EchoBASEi		EB1748

Phylogenomic databases

eggNOGiCOG5557, Bacteria
HOGENOMiCLU_049007_0_0_6
InParanoidiP37180
PhylomeDBiP37180

Enzyme and pathway databases

BioCyciEcoCyc:EG11800-MONOMER
MetaCyc:EG11800-MONOMER

Miscellaneous databases

Protein Ontology

More...PROi		PR:P37180

Family and domain databases

InterProiView protein in InterPro
IPR005614, NrfD_fam
PfamiView protein in Pfam
PF03916, NrfD, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiHYBB_ECOLI
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: P37180
Secondary accession number(s): Q2M9K0
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 1, 1994
Last sequence update: August 29, 2003
Last modified: April 7, 2021
This is version 135 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
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