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Protein

50S ribosomal protein L12-3, chloroplastic

Gene

RPL12C

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • defense response to bacterium Source: TAIR
  • response to cytokinin Source: TAIR
  • translation Source: TAIR

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L12-3, chloroplastic
Alternative name(s):
CL12-C
Gene namesi
Name:RPL12C
Ordered Locus Names:At3g27850
ORF Names:K16N12.7, K16N2.21
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G27850
TAIRilocus:2086450 AT3G27850

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Chloroplast, Plastid

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transit peptidei1 – 54ChloroplastSequence analysisAdd BLAST54
ChainiPRO_000003045055 – 18750S ribosomal protein L12-3, chloroplasticAdd BLAST133

Proteomic databases

PaxDbiP36212
PRIDEiP36212

PTM databases

iPTMnetiP36212

Expressioni

Gene expression databases

ExpressionAtlasiP36212 baseline and differential
GenevisibleiP36212 AT

Interactioni

Protein-protein interaction databases

BioGridi7735, 2 interactors
STRINGi3702.AT3G27850.1

Structurei

3D structure databases

ProteinModelPortaliP36212
SMRiP36212
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transit peptide

Phylogenomic databases

eggNOGiKOG1715 Eukaryota
COG0222 LUCA
HOGENOMiHOG000248813
InParanoidiP36212
KOiK02935
OMAiLASVHHF
OrthoDBiEOG09360WH3
PhylomeDBiP36212

Family and domain databases

CDDicd00387 Ribosomal_L7_L12, 1 hit
Gene3Di3.30.1390.10, 1 hit
HAMAPiMF_00368 Ribosomal_L7_L12, 1 hit
InterProiView protein in InterPro
IPR000206 Ribosomal_L7/12
IPR014719 Ribosomal_L7/12_C/ClpS-like
IPR013823 Ribosomal_L7/L12_C
IPR008932 Ribosomal_L7/L12_oligo
IPR036235 Ribosomal_L7/L12_oligo_N_sf
PfamiView protein in Pfam
PF00542 Ribosomal_L12, 1 hit
PF16320 Ribosomal_L12_N, 1 hit
ProDomiView protein in ProDom or Entries sharing at least one domain
PD001326 Ribosomal_L7/L12_C, 1 hit
SUPFAMiSSF48300 SSF48300, 1 hit
SSF54736 SSF54736, 1 hit
TIGRFAMsiTIGR00855 L12, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P36212-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASTTLSIAT TIRSSSPLTS ASTHHFLSKP TAIEFPFRLS SSSSHRAINL
60 70 80 90 100
RPISAVEAPE KIEKIGSEIS SLTLEEARIL VDYLQDKFGV SPLSLAPAAA
110 120 130 140 150
AVAAPADGGA AAVVEEQTEF DVVINEVPSS SRIAVIKAVR ALTSLALKEA
160 170 180
KELIEGLPKK FKEGITKDEA EEAKKTLEEA GAKVSIA
Length:187
Mass (Da):19,682
Last modified:June 6, 2002 - v2
Checksum:i1F705ADACB030199
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti20S → C in CAA48183 (PubMed:8125949).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X68046 Genomic DNA Translation: CAA48183.1
AP000371 Genomic DNA Translation: BAB02531.1
CP002686 Genomic DNA Translation: AEE77372.1
AY037241 mRNA Translation: AAK59841.1
AY136300 mRNA Translation: AAM96966.1
AY143956 mRNA Translation: AAN28895.1
PIRiC53394
RefSeqiNP_189423.1, NM_113701.3
UniGeneiAt.20381
At.251
At.71465

Genome annotation databases

EnsemblPlantsiAT3G27850.1; AT3G27850.1; AT3G27850
GeneIDi822405
GrameneiAT3G27850.1; AT3G27850.1; AT3G27850
KEGGiath:AT3G27850

Similar proteinsi

Entry informationi

Entry nameiRK123_ARATH
AccessioniPrimary (citable) accession number: P36212
Secondary accession number(s): Q9LK92
Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 1, 1994
Last sequence update: June 6, 2002
Last modified: April 25, 2018
This is version 135 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

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