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Protein

60S ribosomal protein L21

Gene

rpl-21

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-CEL-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-CEL-1799339 SRP-dependent cotranslational protein targeting to membrane
R-CEL-72689 Formation of a pool of free 40S subunits
R-CEL-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-CEL-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-CEL-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L21
Gene namesi
Name:rpl-21
ORF Names:C14B9.7
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome III

Organism-specific databases

WormBaseiC14B9.7 ; CE00078 ; WBGene00004433 ; rpl-21

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemovedBy similarity
ChainiPRO_00001496742 – 16160S ribosomal protein L21Add BLAST160

Proteomic databases

EPDiP34334
PaxDbiP34334
PeptideAtlasiP34334
PRIDEiP34334

Expressioni

Gene expression databases

BgeeiWBGene00004433

Interactioni

Protein-protein interaction databases

BioGridi41352, 3 interactors
DIPiDIP-24597N
IntActiP34334, 2 interactors
STRINGi6239.C14B9.7.1

Structurei

3D structure databases

ProteinModelPortaliP34334
SMRiP34334
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG1732 Eukaryota
COG2139 LUCA
GeneTreeiENSGT00390000001293
HOGENOMiHOG000194513
InParanoidiP34334
KOiK02889
OMAiHVKHSKS
OrthoDBiEOG091G0SNM
PhylomeDBiP34334

Family and domain databases

Gene3Di2.30.30.70, 1 hit
InterProiView protein in InterPro
IPR036948 Ribosomal_L21_sf
IPR001147 Ribosomal_L21e
IPR018259 Ribosomal_L21e_CS
IPR008991 Translation_prot_SH3-like_sf
PANTHERiPTHR20981 PTHR20981, 1 hit
PfamiView protein in Pfam
PF01157 Ribosomal_L21e, 1 hit
SUPFAMiSSF50104 SSF50104, 1 hit
PROSITEiView protein in PROSITE
PS01171 RIBOSOMAL_L21E, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P34334-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTNSKGLRRG TRYMFARDFR KHGVEHLSTY YTQYKRGDLV DIKTNGAFQK
60 70 80 90 100
GMPFKAYHGR TGRIFNVTRG AVGIIVNKRV RGNILPKRIN IRIEHIKPSK
110 120 130 140 150
CRTDFLNRVK SNDEKRKAAK SAGQPVPALK RLPVAPRGAH TVTTQNNEPE
160
LLAPLRFEIV A
Length:161
Mass (Da):18,310
Last modified:January 23, 2007 - v3
Checksum:i4F02C03F13F0D895
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO080531 Genomic DNA Translation: CCD64440.1
PIRiS44757
RefSeqiNP_498774.1, NM_066373.5
UniGeneiCel.7460

Genome annotation databases

EnsemblMetazoaiC14B9.7; C14B9.7; WBGene00004433
GeneIDi176146
KEGGicel:CELE_C14B9.7
UCSCiC14B9.7.2 c. elegans

Similar proteinsi

Entry informationi

Entry nameiRL21_CAEEL
AccessioniPrimary (citable) accession number: P34334
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 1, 1994
Last sequence update: January 23, 2007
Last modified: May 23, 2018
This is version 125 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

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