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Protein

Uncharacterized HTH-type transcriptional regulator YafC

Gene

yafC

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi20 – 39H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

  • response to ionizing radiation Source: EcoCyc
  • transcription, DNA-templated Source: EcoCyc

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Enzyme and pathway databases

BioCyciEcoCyc:EG11649-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YafC
Gene namesi
Name:yafC
Ordered Locus Names:b0208, JW0198
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11649 yafC

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001057741 – 304Uncharacterized HTH-type transcriptional regulator YafCAdd BLAST304

Proteomic databases

PaxDbiP30864
PRIDEiP30864

Interactioni

Protein-protein interaction databases

BioGridi4261788, 11 interactors
DIPiDIP-11210N
IntActiP30864, 6 interactors
STRINGi316385.ECDH10B_0189

Structurei

3D structure databases

ProteinModelPortaliP30864
SMRiP30864
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 60HTH lysR-typePROSITE-ProRule annotationAdd BLAST60

Phylogenomic databases

eggNOGiENOG4105HEI Bacteria
ENOG410XRV0 LUCA
HOGENOMiHOG000233519
InParanoidiP30864
OMAiACLSGFM
PhylomeDBiP30864

Family and domain databases

Gene3Di1.10.10.10, 1 hit
InterProiView protein in InterPro
IPR005119 LysR_subst-bd
IPR000847 Tscrpt_reg_HTH_LysR
IPR036388 WH-like_DNA-bd_sf
IPR036390 WH_DNA-bd_sf
PfamiView protein in Pfam
PF00126 HTH_1, 1 hit
PF03466 LysR_substrate, 1 hit
PRINTSiPR00039 HTHLYSR
SUPFAMiSSF46785 SSF46785, 1 hit
PROSITEiView protein in PROSITE
PS50931 HTH_LYSR, 1 hit

Sequencei

Sequence statusi: Complete.

P30864-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKATSEELAI FVSVVESGSF SRAAEQLGQA NSAVSRAVKK LEMKLGVSLL
60 70 80 90 100
NRTTRQLSLT EEGERYFRRV QSILQEMAAA ESEIMETRNT PRGLLRIDAA
110 120 130 140 150
TPVVLHFLMP LIKPFRERYP EVTLSLVSSE TIINLIERKV DVAIRAGTLT
160 170 180 190 200
DSSLRARPLF NSYRKIIASP DYISRYGKPE TIDDLKQHIC LGFTEPASLN
210 220 230 240 250
TWPIARSDGQ LHEVKYGLSS NSGETLKQLC LSGNGIACLS DYMIDKEIAR
260 270 280 290 300
GELVELMADK VLPVEMPFSA VYYSDRAVST RIRAFIDFLS EHVKTAPGGA

VREA
Length:304
Mass (Da):33,776
Last modified:July 1, 1993 - v1
Checksum:iE7179C36A2264BA9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D12650 Genomic DNA Translation: BAA02171.1
U70214 Genomic DNA Translation: AAB08630.1
U00096 Genomic DNA Translation: AAC73313.1
AP009048 Genomic DNA Translation: BAA77879.1
PIRiJS0716
RefSeqiNP_414744.1, NC_000913.3
WP_000648572.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC73313; AAC73313; b0208
BAA77879; BAA77879; BAA77879
GeneIDi947507
KEGGiecj:JW0198
eco:b0208
PATRICifig|1411691.4.peg.2076

Similar proteinsi

Entry informationi

Entry nameiYAFC_ECOLI
AccessioniPrimary (citable) accession number: P30864
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 1, 1993
Last sequence update: July 1, 1993
Last modified: March 28, 2018
This is version 128 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

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