UniProtKB - P30820 (NIGY_DESVH)
Protein
Nigerythrin
Gene
ngr
Organism
Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / DSM 644 / NCIMB 8303)
Status
Functioni
Exhibits NADH peroxidase activity (in vitro).
Sites
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Metal bindingi | 40 | Iron 1 | 1 | |
Metal bindingi | 73 | Iron 1 | 1 | |
Metal bindingi | 73 | Iron 2 | 1 | |
Metal bindingi | 115 | Iron 2 | 1 | |
Metal bindingi | 118 | Iron 1 | 1 | |
Metal bindingi | 149 | Iron 1 | 1 | |
Metal bindingi | 149 | Iron 2 | 1 | |
Metal bindingi | 152 | Iron 2 | 1 | |
Metal bindingi | 174 | Iron 3 | 1 | |
Metal bindingi | 177 | Iron 3 | 1 | |
Metal bindingi | 189 | Iron 3 | 1 | |
Metal bindingi | 192 | Iron 3 | 1 |
GO - Molecular functioni
- iron ion binding Source: InterPro
- oxidoreductase activity Source: InterPro
Keywordsi
Biological process | Electron transport, Transport |
Ligand | Iron, Metal-binding |
Enzyme and pathway databases
BioCyci | DVUL882:G1GT1-20-MONOMER |
Names & Taxonomyi
Protein namesi | Recommended name: Nigerythrin |
Gene namesi | Name:ngr Ordered Locus Names:DVU_0019 |
Organismi | Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / DSM 644 / NCIMB 8303) |
Taxonomic identifieri | 882 [NCBI] |
Taxonomic lineagei | Bacteria › Proteobacteria › Deltaproteobacteria › Desulfovibrionales › Desulfovibrionaceae › Desulfovibrio › |
Proteomesi |
|
Subcellular locationi
Cytoplasm and Cytosol
- Cytoplasm Curated
Other locations
- cytoplasm Source: UniProtKB-SubCell
Keywords - Cellular componenti
CytoplasmPTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
ChainiPRO_0000135072 | 1 – 202 | NigerythrinAdd BLAST | 202 |
Proteomic databases
PaxDbi | P30820 |
Interactioni
Subunit structurei
Homodimer. May possess two rubredoxin-like centers and two hemerythrin-like binuclear-iron centers per dimer.
Protein-protein interaction databases
IntActi | P30820, 1 interactor |
STRINGi | 882.DVU_0019 |
Structurei
Secondary structure
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details3D structure databases
SMRi | P30820 |
ModBasei | Search... |
PDBe-KBi | Search... |
Miscellaneous databases
EvolutionaryTracei | P30820 |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 23 – 168 | Ferritin-like diironPROSITE-ProRule annotationAdd BLAST | 146 | |
Domaini | 169 – 202 | Rubredoxin-likePROSITE-ProRule annotationAdd BLAST | 34 |
Phylogenomic databases
eggNOGi | COG1592, Bacteria |
HOGENOMi | CLU_095256_1_0_7 |
OMAi | NEVHICS |
PhylomeDBi | P30820 |
Family and domain databases
CDDi | cd01041, Rubrerythrin, 1 hit |
Gene3Di | 1.20.1260.10, 1 hit |
InterProi | View protein in InterPro IPR012347, Ferritin-like IPR009040, Ferritin-like_diiron IPR009078, Ferritin-like_SF IPR024934, Rubredoxin-like_dom IPR003251, Rubrerythrin |
Pfami | View protein in Pfam PF02915, Rubrerythrin, 1 hit |
SUPFAMi | SSF47240, SSF47240, 1 hit |
PROSITEi | View protein in PROSITE PS50905, FERRITIN_LIKE, 1 hit PS50903, RUBREDOXIN_LIKE, 1 hit |
i Sequence
Sequence statusi: Complete.
P30820-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MKVRAQVPTV KNATNFNMVA DSKTAVGSTL ENLKAAIAGE TGAHAKYTAF
60 70 80 90 100
AKAAREQGYE QIARLFEATA AAELIHIGLE YALVAEMEPG YEKPTVAAPS
110 120 130 140 150
AYSCDLNLIS GANGEIYETS DMYPAFIRKA QEEGNSKAVH VFTRAKLAES
160 170 180 190 200
VHAERYLAAY NDIDAPDDDK FHLCPICGYI HKGEDFEKCP ICFRPKDTFT
AY
Experimental Info
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Sequence conflicti | 129 | K → E in AAC45480 (PubMed:9226272).Curated | 1 | |
Sequence conflicti | 132 | E → G in AAC45480 (PubMed:9226272).Curated | 1 |
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | U71215 Genomic DNA Translation: AAC45480.1 AE017285 Genomic DNA Translation: AAS94503.1 |
RefSeqi | WP_010937330.1, NZ_CABHLV010000001.1 YP_009244.1, NC_002937.3 |
Genome annotation databases
EnsemblBacteriai | AAS94503; AAS94503; DVU_0019 |
KEGGi | dvu:DVU0019 |
PATRICi | fig|882.5.peg.16 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | U71215 Genomic DNA Translation: AAC45480.1 AE017285 Genomic DNA Translation: AAS94503.1 |
RefSeqi | WP_010937330.1, NZ_CABHLV010000001.1 YP_009244.1, NC_002937.3 |
3D structure databases
Select the link destinations: PDBei RCSB PDBi PDBji Links Updated | PDB entry | Method | Resolution (Å) | Chain | Positions | PDBsum |
1YUX | X-ray | 1.60 | A/B | 1-202 | [»] | |
1YUZ | X-ray | 1.40 | A/B | 1-202 | [»] | |
1YV1 | X-ray | 1.50 | A/B | 1-202 | [»] | |
SMRi | P30820 | |||||
ModBasei | Search... | |||||
PDBe-KBi | Search... |
Protein-protein interaction databases
IntActi | P30820, 1 interactor |
STRINGi | 882.DVU_0019 |
Proteomic databases
PaxDbi | P30820 |
Genome annotation databases
EnsemblBacteriai | AAS94503; AAS94503; DVU_0019 |
KEGGi | dvu:DVU0019 |
PATRICi | fig|882.5.peg.16 |
Phylogenomic databases
eggNOGi | COG1592, Bacteria |
HOGENOMi | CLU_095256_1_0_7 |
OMAi | NEVHICS |
PhylomeDBi | P30820 |
Enzyme and pathway databases
BioCyci | DVUL882:G1GT1-20-MONOMER |
Miscellaneous databases
EvolutionaryTracei | P30820 |
Family and domain databases
CDDi | cd01041, Rubrerythrin, 1 hit |
Gene3Di | 1.20.1260.10, 1 hit |
InterProi | View protein in InterPro IPR012347, Ferritin-like IPR009040, Ferritin-like_diiron IPR009078, Ferritin-like_SF IPR024934, Rubredoxin-like_dom IPR003251, Rubrerythrin |
Pfami | View protein in Pfam PF02915, Rubrerythrin, 1 hit |
SUPFAMi | SSF47240, SSF47240, 1 hit |
PROSITEi | View protein in PROSITE PS50905, FERRITIN_LIKE, 1 hit PS50903, RUBREDOXIN_LIKE, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | NIGY_DESVH | |
Accessioni | P30820Primary (citable) accession number: P30820 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | July 1, 1993 |
Last sequence update: | May 24, 2004 | |
Last modified: | April 7, 2021 | |
This is version 127 of the entry and version 3 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Prokaryotic Protein Annotation Program |
Miscellaneousi
Keywords - Technical termi
3D-structure, Direct protein sequencing, Reference proteomeDocuments
- PDB cross-references
Index of Protein Data Bank (PDB) cross-references