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Protein

50S ribosomal protein L13

Gene

rpl13

Organism
Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) (Halobacterium marismortui)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

This protein is one of the early assembly proteins of the 50S ribosomal subunit (By similarity). Binds to 23S rRNA.By similarity

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L13UniRule annotation
Alternative name(s):
Hmal13
Gene namesi
Name:rpl13UniRule annotation
Ordered Locus Names:rrnAC0065
OrganismiHaloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) (Halobacterium marismortui)
Taxonomic identifieri272569 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaHalobacteriaHalobacterialesHaloarculaceaeHaloarcula
Proteomesi
  • UP000001169 Componenti: Chromosome I

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001337581 – 14550S ribosomal protein L13Add BLAST145

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit. Interacts weakly with proteins L3 and L6.UniRule annotation2 Publications

Protein-protein interaction databases

STRINGi272569.rrnAC0065

Structurei

Secondary structure

1145
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi9 – 13Combined sources5
Helixi19 – 31Combined sources13
Beta strandi36 – 39Combined sources4
Helixi41 – 43Combined sources3
Beta strandi45 – 48Combined sources4
Helixi50 – 62Combined sources13
Helixi75 – 84Combined sources10
Turni85 – 90Combined sources6
Helixi92 – 99Combined sources8
Beta strandi101 – 103Combined sources3
Beta strandi109 – 111Combined sources3
Turni117 – 119Combined sources3
Turni123 – 125Combined sources3
Beta strandi128 – 131Combined sources4
Helixi132 – 139Combined sources8

3D structure databases

ProteinModelPortaliP29198
SMRiP29198
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP29198

Family & Domainsi

Sequence similaritiesi

Belongs to the universal ribosomal protein uL13 family.UniRule annotation

Phylogenomic databases

eggNOGiarCOG04242 Archaea
COG0102 LUCA
HOGENOMiHOG000225287
KOiK02871
OMAiYHNFLHK
OrthoDBiPOG093Z0DQ4

Family and domain databases

CDDicd00392 Ribosomal_L13, 1 hit
Gene3Di3.90.1180.10, 1 hit
HAMAPiMF_01366 Ribosomal_L13, 1 hit
InterProiView protein in InterPro
IPR005822 Ribosomal_L13
IPR023563 Ribosomal_L13_CS
IPR005755 Ribosomal_L13_euk/arc
IPR036899 Ribosomal_L13_sf
PANTHERiPTHR11545 PTHR11545, 1 hit
PTHR11545:SF3 PTHR11545:SF3, 1 hit
PfamiView protein in Pfam
PF00572 Ribosomal_L13, 1 hit
PIRSFiPIRSF002181 Ribosomal_L13, 1 hit
SUPFAMiSSF52161 SSF52161, 1 hit
TIGRFAMsiTIGR01077 L13_A_E, 1 hit
PROSITEiView protein in PROSITE
PS00783 RIBOSOMAL_L13, 1 hit

Sequencei

Sequence statusi: Complete.

P29198-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSVAEFDADV IVDARDCIMG RVASQVAEQA LDGETVAVVN AERAVITGRE
60 70 80 90 100
EQIVEKYEKR VDIGNDNGYF YPKRPDGIFK RTIRGMLPHK KQRGREAFES
110 120 130 140
VRVYLGNPYD EDGEVLDGTS LDRLSNIKFV TLGEISETLG ANKTW
Length:145
Mass (Da):16,228
Last modified:December 1, 1992 - v1
Checksum:i069CE666662AE3BC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M76567 Genomic DNA Translation: AAA73097.1
AY596297 Genomic DNA Translation: AAV45145.1
PIRiB41715
RefSeqiWP_004593558.1, NC_006396.1

Genome annotation databases

EnsemblBacteriaiAAV45145; AAV45145; rrnAC0065
GeneIDi3130528
KEGGihma:rrnAC0065
PATRICifig|272569.17.peg.873

Similar proteinsi

Entry informationi

Entry nameiRL13_HALMA
AccessioniPrimary (citable) accession number: P29198
Secondary accession number(s): Q5V5Q7
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 1, 1992
Last sequence update: December 1, 1992
Last modified: March 28, 2018
This is version 125 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

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