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Protein

DNA-directed RNA polymerase II subunit RPB9

Gene

RPB9

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB9 is part of the upper jaw surrounding the central large cleft and thought to grab the incoming DNA template. Involved in the regulation of transcription elongation. Involved in DNA repair of damage in the transcribed strand. Mediates a transcription-coupled repair (TCR) subpathway of nucleotide excision repair (NER).1 Publication

Miscellaneous

Present with 2440 molecules/cell in log phase SD medium.1 Publication

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Function’ section indicates at which position the protein binds a given metal ion. The nature of the metal is indicated in the ‘Description’ field.<p><a href='/help/metal' target='_top'>More...</a></p>Metal bindingi7Zinc 11 Publication3 Publications1
Metal bindingi10Zinc 11 Publication3 Publications1
Metal bindingi29Zinc 11 Publication3 Publications1
Metal bindingi32Zinc 11 Publication3 Publications1
Metal bindingi75Zinc 21 Publication3 Publications1
Metal bindingi78Zinc 21 Publication3 Publications1
Metal bindingi103Zinc 21 Publication3 Publications1
Metal bindingi106Zinc 21 Publication3 Publications1

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Function’ section specifies the position(s) and type(s) of zinc fingers within the protein.<p><a href='/help/zn_fing' target='_top'>More...</a></p>Zinc fingeri7 – 32C4-typeSequence analysisAdd BLAST26
Zinc fingeri71 – 111TFIIS-typePROSITE-ProRule annotationAdd BLAST41

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Biological processDNA damage, DNA repair, Transcription
LigandMetal-binding, Zinc

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

More...
BioCyci
YEAST:G3O-30573-MONOMER

Reactome - a knowledgebase of biological pathways and processes

More...
Reactomei
R-SCE-113418 Formation of the Early Elongation Complex
R-SCE-674695 RNA Polymerase II Pre-transcription Events
R-SCE-6781823 Formation of TC-NER Pre-Incision Complex
R-SCE-6782135 Dual incision in TC-NER
R-SCE-6782210 Gap-filling DNA repair synthesis and ligation in TC-NER
R-SCE-6796648 TP53 Regulates Transcription of DNA Repair Genes
R-SCE-6807505 RNA polymerase II transcribes snRNA genes
R-SCE-72086 mRNA Capping
R-SCE-72165 mRNA Splicing - Minor Pathway
R-SCE-73776 RNA Polymerase II Promoter Escape
R-SCE-73779 RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
R-SCE-75953 RNA Polymerase II Transcription Initiation
R-SCE-76042 RNA Polymerase II Transcription Initiation And Promoter Clearance
R-SCE-77075 RNA Pol II CTD phosphorylation and interaction with CE
R-SCE-9018519 Estrogen-dependent gene expression

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
DNA-directed RNA polymerase II subunit RPB9
Short name:
RNA polymerase II subunit B9
Alternative name(s):
B12.6
DNA-directed RNA polymerase II 14.2 kDa polypeptide
DNA-directed RNA polymerase II subunit 9
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:RPB9
Ordered Locus Names:YGL070C
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri559292 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000002311 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome VII

Organism-specific databases

Saccharomyces Genome Database

More...
SGDi
S000003038 RPB9

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

DNA-directed RNA polymerase, Nucleus

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00001214741 – 122DNA-directed RNA polymerase II subunit RPB9Add BLAST122

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section specifies the position and type of each modified residue excluding <a href="http://www.uniprot.org/manual/lipid">lipids</a>, <a href="http://www.uniprot.org/manual/carbohyd">glycans</a> and <a href="http://www.uniprot.org/manual/crosslnk">protein cross-links</a>.<p><a href='/help/mod_res' target='_top'>More...</a></p>Modified residuei40PhosphoserineCombined sources1

Keywords - PTMi

Phosphoprotein

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
P27999

PRoteomics IDEntifications database

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PRIDEi
P27999

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
P27999

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction_section">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Component of the RNA polymerase II (Pol II) complex consisting of 12 subunits.12 Publications

<p>This subsection of the '<a href="http://www.uniprot.org/help/interaction_section%27">Interaction</a> section provides information about binary protein-protein interactions. The data presented in this section are a quality-filtered subset of binary interactions automatically derived from the <a href="http://www.ebi.ac.uk/intact/">IntAct database</a>. It is updated on a monthly basis. Each binary interaction is displayed on a separate line.<p><a href='/help/binary_interactions' target='_top'>More...</a></p>Binary interactionsi

WithEntry#Exp.IntActNotes
RPB8P204363EBI-15798,EBI-15794

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGrid)

More...
BioGridi
33178, 91 interactors

ComplexPortal: manually curated resource of macromolecular complexes

More...
ComplexPortali
CPX-2662 DNA-directed RNA polymerase II complex

Database of interacting proteins

More...
DIPi
DIP-610N

Protein interaction database and analysis system

More...
IntActi
P27999, 20 interactors

Molecular INTeraction database

More...
MINTi
P27999

STRING: functional protein association networks

More...
STRINGi
4932.YGL070C

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

Secondary structure

1122
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details

3D structure databases

Protein Model Portal of the PSI-Nature Structural Biology Knowledgebase

More...
ProteinModelPortali
P27999

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
P27999

Database of comparative protein structure models

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ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

Miscellaneous databases

Relative evolutionary importance of amino acids within a protein sequence

More...
EvolutionaryTracei
P27999

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri7 – 32C4-typeSequence analysisAdd BLAST26
Zinc fingeri71 – 111TFIIS-typePROSITE-ProRule annotationAdd BLAST41

Keywords - Domaini

Zinc-finger

Phylogenomic databases

Ensembl GeneTree

More...
GeneTreei
ENSGT00550000075063

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

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HOGENOMi
HOG000228134

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
P27999

KEGG Orthology (KO)

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KOi
K03017

Identification of Orthologs from Complete Genome Data

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OMAi
ETRMILF

Database of Orthologous Groups

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OrthoDBi
EOG092C59RA

Family and domain databases

Conserved Domains Database

More...
CDDi
cd10508 Zn-ribbon_RPB9, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR019761 DNA-dir_RNA_pol-M_15_CS
IPR001529 DNA-dir_RNA_pol_M/15kDasu
IPR012164 Rpa12/Rpb9/Rpc10/TFS
IPR034012 Zn_ribbon_RPB9_C
IPR001222 Znf_TFIIS

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF02150 RNA_POL_M_15KD, 1 hit
PF01096 TFIIS_C, 1 hit

PIRSF; a whole-protein classification database

More...
PIRSFi
PIRSF005586 RNApol_RpoM, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

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SMARTi
View protein in SMART
SM00661 RPOL9, 1 hit
SM00440 ZnF_C2C2, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS01030 RNA_POL_M_15KD, 1 hit
PS00466 ZF_TFIIS_1, 1 hit
PS51133 ZF_TFIIS_2, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

P27999-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MTTFRFCRDC NNMLYPREDK ENNRLLFECR TCSYVEEAGS PLVYRHELIT
60 70 80 90 100
NIGETAGVVQ DIGSDPTLPR SDRECPKCHS RENVFFQSQQ RRKDTSMVLF
110 120
FVCLSCSHIF TSDQKNKRTQ FS
Length:122
Mass (Da):14,288
Last modified:August 1, 1992 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iA80D69678A722881
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
M73060 Genomic DNA Translation: AAA34997.1
Z72592 Genomic DNA Translation: CAA96774.1
AY557799 Genomic DNA Translation: AAS56125.1
BK006941 Genomic DNA Translation: DAA08033.1

Protein sequence database of the Protein Information Resource

More...
PIRi
A41016 RNBY29

NCBI Reference Sequences

More...
RefSeqi
NP_011445.1, NM_001180935.1

Genome annotation databases

Ensembl fungal genome annotation project

More...
EnsemblFungii
YGL070C_mRNA; YGL070C_mRNA; YGL070C

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
852810

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
sce:YGL070C

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M73060 Genomic DNA Translation: AAA34997.1
Z72592 Genomic DNA Translation: CAA96774.1
AY557799 Genomic DNA Translation: AAS56125.1
BK006941 Genomic DNA Translation: DAA08033.1
PIRiA41016 RNBY29
RefSeqiNP_011445.1, NM_001180935.1

3D structure databases

Select the link destinations:

Protein Data Bank Europe

More...
PDBei

Protein Data Bank RCSB

More...
RCSB PDBi

Protein Data Bank Japan

More...
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1I3QX-ray3.10I1-122[»]
1I50X-ray2.80I1-122[»]
1I6HX-ray3.30I1-122[»]
1K83X-ray2.80I1-122[»]
1NIKX-ray4.10I1-122[»]
1NT9X-ray4.20I1-122[»]
1PQVX-ray3.80I1-122[»]
1R5UX-ray4.50I1-122[»]
1R9SX-ray4.25I1-122[»]
1R9TX-ray3.50I1-122[»]
1SFOX-ray3.61I1-122[»]
1TWAX-ray3.20I1-122[»]
1TWCX-ray3.00I1-122[»]
1TWFX-ray2.30I1-122[»]
1TWGX-ray3.30I1-122[»]
1TWHX-ray3.40I1-122[»]
1WCMX-ray3.80I1-122[»]
1Y1VX-ray3.80I1-122[»]
1Y1WX-ray4.00I1-122[»]
1Y1YX-ray4.00I1-122[»]
1Y77X-ray4.50I1-122[»]
2B63X-ray3.80I1-122[»]
2B8KX-ray4.15I1-122[»]
2E2HX-ray3.95I1-122[»]
2E2IX-ray3.41I1-122[»]
2E2JX-ray3.50I1-122[»]
2JA5X-ray3.80I1-122[»]
2JA6X-ray4.00I1-122[»]
2JA7X-ray3.80I/U1-122[»]
2JA8X-ray3.80I1-122[»]
2NVQX-ray2.90I1-122[»]
2NVTX-ray3.36I1-122[»]
2NVXX-ray3.60I1-122[»]
2NVYX-ray3.40I1-122[»]
2NVZX-ray4.30I1-122[»]
2R7ZX-ray3.80I1-122[»]
2R92X-ray3.80I1-122[»]
2R93X-ray4.00I1-122[»]
2VUMX-ray3.40I1-122[»]
2YU9X-ray3.40I1-122[»]
3CQZX-ray2.80I1-122[»]
3FKIX-ray3.88I1-122[»]
3GTGX-ray3.78I1-122[»]
3GTJX-ray3.42I1-122[»]
3GTKX-ray3.80I1-122[»]
3GTLX-ray3.38I1-122[»]
3GTMX-ray3.80I1-122[»]
3GTOX-ray4.00I1-122[»]
3GTPX-ray3.90I1-122[»]
3GTQX-ray3.80I1-122[»]
3H3VX-ray4.00J1-122[»]
3HOUX-ray3.20I/U1-122[»]
3HOVX-ray3.50I1-122[»]
3HOWX-ray3.60I1-122[»]
3HOXX-ray3.65I1-122[»]
3HOYX-ray3.40I1-122[»]
3HOZX-ray3.65I1-122[»]
3I4MX-ray3.70I1-122[»]
3I4NX-ray3.90I1-122[»]
3J0Kelectron microscopy36.00I1-122[»]
3J1Nelectron microscopy16.00I1-122[»]
3K1FX-ray4.30I1-122[»]
3K7AX-ray3.80I1-122[»]
3M3YX-ray3.18I1-122[»]
3M4OX-ray3.57I1-122[»]
3PO2X-ray3.30I1-122[»]
3PO3X-ray3.30I1-122[»]
3QT1X-ray4.30I1-87[»]
3RZDX-ray3.30I1-122[»]
3RZOX-ray3.00I1-122[»]
3S14X-ray2.85I1-122[»]
3S15X-ray3.30I1-122[»]
3S16X-ray3.24I1-122[»]
3S17X-ray3.20I1-122[»]
3S1MX-ray3.13I1-122[»]
3S1NX-ray3.10I1-122[»]
3S1QX-ray3.30I1-122[»]
3S1RX-ray3.20I1-122[»]
3S2DX-ray3.20I1-122[»]
3S2HX-ray3.30I1-122[»]
4A3BX-ray3.50I1-122[»]
4A3CX-ray3.50I1-122[»]
4A3DX-ray3.40I1-122[»]
4A3EX-ray3.40I1-122[»]
4A3FX-ray3.50I1-122[»]
4A3GX-ray3.50I1-122[»]
4A3IX-ray3.80I1-122[»]
4A3JX-ray3.70I1-122[»]
4A3KX-ray3.50I1-122[»]
4A3LX-ray3.50I1-122[»]
4A3MX-ray3.90I1-122[»]
4A93X-ray3.40I1-122[»]
4BBRX-ray3.40I1-122[»]
4BBSX-ray3.60I1-122[»]
4BXXX-ray3.28I1-122[»]
4BXZX-ray4.80I1-122[»]
4BY1X-ray3.60I1-122[»]
4BY7X-ray3.15I1-122[»]
4V1Melectron microscopy6.60I1-122[»]
4V1Nelectron microscopy7.80I1-122[»]
4V1Oelectron microscopy9.70I1-122[»]
4X67X-ray4.10I1-122[»]
4X6AX-ray3.96I1-122[»]
4Y52X-ray3.50I1-122[»]
4Y7NX-ray3.30I1-122[»]
5C3EX-ray3.70I1-122[»]
5C44X-ray3.95I1-120[»]
5C4AX-ray4.20I1-122[»]
5C4JX-ray4.00I1-122[»]
5C4XX-ray4.00I1-122[»]
5FMFelectron microscopy6.00I2-120[»]
5FYWelectron microscopy4.35I1-122[»]
5FZ5electron microscopy8.80I1-122[»]
5IP7X-ray3.52I2-120[»]
5IP9X-ray3.90I2-120[»]
5OQJelectron microscopy4.70I1-122[»]
5OQMelectron microscopy5.80I1-122[»]
5OT2X-ray3.20I1-122[»]
5SVAelectron microscopy15.30I1-122[»]
5U5QX-ray3.80I1-122[»]
5VVRelectron microscopy5.80I1-122[»]
5VVSelectron microscopy6.40I1-122[»]
5W4UX-ray3.60I1-122[»]
5W51X-ray3.40I1-122[»]
6BLOX-ray3.40I1-122[»]
6BLPX-ray3.20I1-122[»]
6BM2X-ray3.40I1-122[»]
6BM4X-ray2.95I1-122[»]
6BQFX-ray3.35I1-122[»]
ProteinModelPortaliP27999
SMRiP27999
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi33178, 91 interactors
ComplexPortaliCPX-2662 DNA-directed RNA polymerase II complex
DIPiDIP-610N
IntActiP27999, 20 interactors
MINTiP27999
STRINGi4932.YGL070C

PTM databases

iPTMnetiP27999

Proteomic databases

PaxDbiP27999
PRIDEiP27999

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiYGL070C_mRNA; YGL070C_mRNA; YGL070C
GeneIDi852810
KEGGisce:YGL070C

Organism-specific databases

SGDiS000003038 RPB9

Phylogenomic databases

GeneTreeiENSGT00550000075063
HOGENOMiHOG000228134
InParanoidiP27999
KOiK03017
OMAiETRMILF
OrthoDBiEOG092C59RA

Enzyme and pathway databases

BioCyciYEAST:G3O-30573-MONOMER
ReactomeiR-SCE-113418 Formation of the Early Elongation Complex
R-SCE-674695 RNA Polymerase II Pre-transcription Events
R-SCE-6781823 Formation of TC-NER Pre-Incision Complex
R-SCE-6782135 Dual incision in TC-NER
R-SCE-6782210 Gap-filling DNA repair synthesis and ligation in TC-NER
R-SCE-6796648 TP53 Regulates Transcription of DNA Repair Genes
R-SCE-6807505 RNA polymerase II transcribes snRNA genes
R-SCE-72086 mRNA Capping
R-SCE-72165 mRNA Splicing - Minor Pathway
R-SCE-73776 RNA Polymerase II Promoter Escape
R-SCE-73779 RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
R-SCE-75953 RNA Polymerase II Transcription Initiation
R-SCE-76042 RNA Polymerase II Transcription Initiation And Promoter Clearance
R-SCE-77075 RNA Pol II CTD phosphorylation and interaction with CE
R-SCE-9018519 Estrogen-dependent gene expression

Miscellaneous databases

EvolutionaryTraceiP27999

Protein Ontology

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PROi
PR:P27999

Family and domain databases

CDDicd10508 Zn-ribbon_RPB9, 1 hit
InterProiView protein in InterPro
IPR019761 DNA-dir_RNA_pol-M_15_CS
IPR001529 DNA-dir_RNA_pol_M/15kDasu
IPR012164 Rpa12/Rpb9/Rpc10/TFS
IPR034012 Zn_ribbon_RPB9_C
IPR001222 Znf_TFIIS
PfamiView protein in Pfam
PF02150 RNA_POL_M_15KD, 1 hit
PF01096 TFIIS_C, 1 hit
PIRSFiPIRSF005586 RNApol_RpoM, 1 hit
SMARTiView protein in SMART
SM00661 RPOL9, 1 hit
SM00440 ZnF_C2C2, 1 hit
PROSITEiView protein in PROSITE
PS01030 RNA_POL_M_15KD, 1 hit
PS00466 ZF_TFIIS_1, 1 hit
PS51133 ZF_TFIIS_2, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

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ProtoNeti
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<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiRPB9_YEAST
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: P27999
Secondary accession number(s): D6VU72
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: August 1, 1992
Last sequence update: August 1, 1992
Last modified: December 5, 2018
This is version 204 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  2. Yeast chromosome VII
    Yeast (Saccharomyces cerevisiae) chromosome VII: entries and gene names
  3. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  4. SIMILARITY comments
    Index of protein domains and families
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