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Protein

Ras-related protein RGP1

Gene

RGP1

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

May play an important role in plant growth and development.

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi25 – 32GTPBy similarity8
Nucleotide bindingi73 – 77GTPBy similarity5
Nucleotide bindingi131 – 134GTPBy similarity4

GO - Molecular functioni

  • GTPase activity Source: GO_Central
  • GTP binding Source: UniProtKB-KW

GO - Biological processi

Keywordsi

LigandGTP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Ras-related protein RGP1
Alternative name(s):
GTP-binding regulatory protein RGP1
Gene namesi
Name:RGP1
Ordered Locus Names:Os09g0281700, LOC_Os09g10940
ORF Names:P0645D04.22-1
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryzaOryza sativa
Proteomesi
  • UP000059680 Componenti: Chromosome 9

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001212961 – 226Ras-related protein RGP1Add BLAST226

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Lipidationi223S-geranylgeranyl cysteineBy similarity1
Lipidationi224S-geranylgeranyl cysteineBy similarity1

Keywords - PTMi

Lipoprotein, Prenylation

Proteomic databases

PaxDbiP25766
PRIDEiP25766

Expressioni

Developmental stagei

During seedling RGP1 expression was first observed 14 days after germination, reaching a maximum level between 28 and 42 days, and gradually decreased thereafter until 63 days when it attained the same level of expression as in 14-day old seedlings.

Gene expression databases

ExpressionAtlasiP25766 differential

Interactioni

Protein-protein interaction databases

STRINGi39947.LOC_Os09g10940.1

Structurei

3D structure databases

ProteinModelPortaliP25766
SMRiP25766
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi47 – 55Effector regionSequence analysis9

Sequence similaritiesi

Belongs to the small GTPase superfamily. Rab family.Curated

Phylogenomic databases

eggNOGiKOG0087 Eukaryota
COG1100 LUCA
HOGENOMiHOG000233968
InParanoidiP25766
KOiK07904

Family and domain databases

InterProiView protein in InterPro
IPR027417 P-loop_NTPase
IPR005225 Small_GTP-bd_dom
IPR001806 Small_GTPase
PfamiView protein in Pfam
PF00071 Ras, 1 hit
SUPFAMiSSF52540 SSF52540, 1 hit
TIGRFAMsiTIGR00231 small_GTP, 1 hit
PROSITEiView protein in PROSITE
PS51419 RAB, 1 hit

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

P25766-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSRGGGSYGE VGQKIDYVFK VVLIGDSAVG KSQLLARFAR NEFNLDSKAT
60 70 80 90 100
IGVEFQTRTL HIDARTVKAQ IWDTAGQERY RAVTSAYYRG AVGAMLVYDI
110 120 130 140 150
TKRQSFDHVA RWLEELRGHA DKNIVIMLIG NKSDLGTLRV VPTEDAKEFA
160 170 180 190 200
ERENLFFMET SALESTNVEN AFMTVLTEIY RIVSKKNLVA NEEVDSSGNS
210 220
SLLKGTKIVV PGQEPAPPTK ASCCMS
Length:226
Mass (Da):24,979
Last modified:June 27, 2006 - v2
Checksum:i87B70EC90EFFBD69
GO

Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
Q0J2Y2Q0J2Y2_ORYSJ
Os09g0281700 protein
Os09g0281700 OSNPB_090281700
162Annotation score:

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti37R → G in CAA41966 (PubMed:1715972).Curated1
Sequence conflicti71 – 72IW → TR in CAA41966 (PubMed:1715972).Curated2
Sequence conflicti168V → L in CAA41966 (PubMed:1715972).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X59276 mRNA Translation: CAA41966.1
AP006727 Genomic DNA Translation: BAD29646.1
AP014965 Genomic DNA No translation available.
PIRiS16554
RefSeqiXP_015612602.1, XM_015757116.1
UniGeneiOs.3429

Genome annotation databases

GeneIDi4346614
KEGGiosa:4346614

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X59276 mRNA Translation: CAA41966.1
AP006727 Genomic DNA Translation: BAD29646.1
AP014965 Genomic DNA No translation available.
PIRiS16554
RefSeqiXP_015612602.1, XM_015757116.1
UniGeneiOs.3429

3D structure databases

ProteinModelPortaliP25766
SMRiP25766
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi39947.LOC_Os09g10940.1

Proteomic databases

PaxDbiP25766
PRIDEiP25766

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi4346614
KEGGiosa:4346614

Phylogenomic databases

eggNOGiKOG0087 Eukaryota
COG1100 LUCA
HOGENOMiHOG000233968
InParanoidiP25766
KOiK07904

Gene expression databases

ExpressionAtlasiP25766 differential

Family and domain databases

InterProiView protein in InterPro
IPR027417 P-loop_NTPase
IPR005225 Small_GTP-bd_dom
IPR001806 Small_GTPase
PfamiView protein in Pfam
PF00071 Ras, 1 hit
SUPFAMiSSF52540 SSF52540, 1 hit
TIGRFAMsiTIGR00231 small_GTP, 1 hit
PROSITEiView protein in PROSITE
PS51419 RAB, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiRLGP1_ORYSJ
AccessioniPrimary (citable) accession number: P25766
Secondary accession number(s): Q6ENK7
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 1, 1992
Last sequence update: June 27, 2006
Last modified: November 7, 2018
This is version 116 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
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