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Entry version 153 (11 Dec 2019)
Sequence version 3 (01 Dec 2000)
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Protein

Homeobox protein bagpipe

Gene

bap

Organism
Drosophila melanogaster (Fruit fly)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at transcript leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Involved in the determination of cell fates in the dorsal mesoderm.1 Publication

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section specifies the position and type of each DNA-binding domain present within the protein.<p><a href='/help/dna_bind' target='_top'>More...</a></p>DNA bindingi175 – 234HomeoboxPROSITE-ProRule annotationAdd BLAST60

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionDevelopmental protein, DNA-binding

Enzyme and pathway databases

SignaLink: a signaling pathway resource with multi-layered regulatory networks

More...
SignaLinki
P22809

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Homeobox protein bagpipe
Alternative name(s):
Homeobox protein NK-3
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:bap
Synonyms:bgp, NK3
ORF Names:CG7902
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiDrosophila melanogaster (Fruit fly)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri7227 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaEcdysozoaArthropodaHexapodaInsectaPterygotaNeopteraHolometabolaDipteraBrachyceraMuscomorphaEphydroideaDrosophilidaeDrosophilaSophophora
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000803 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 3R

Organism-specific databases

Drosophila genome database

More...
FlyBasei
FBgn0004862 bap

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00000490161 – 382Homeobox protein bagpipeAdd BLAST382

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
P22809

PRoteomics IDEntifications database

More...
PRIDEi
P22809

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the ‘Expression’ section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified ‘at protein level’. <br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Is expressed in a segmented pattern in visceral muscle and in a subset of cardiac muscles. Loss of activity results in segmental gaps in midgut visceral muscle.1 Publication

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...
Bgeei
FBgn0004862 Expressed in 24 organ(s), highest expression level in embryo

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
P22809 differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
P22809 DM

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGrid)

More...
BioGridi
67503, 5 interactors

STRING: functional protein association networks

More...
STRINGi
7227.FBpp0083486

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
P22809

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the NK-3 homeobox family.Curated

Keywords - Domaini

Homeobox

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG0842 Eukaryota
ENOG410XR21 LUCA

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
P22809

KEGG Orthology (KO)

More...
KOi
K09995

Identification of Orthologs from Complete Genome Data

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OMAi
FPYFYPQ

Database of Orthologous Groups

More...
OrthoDBi
858478at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
P22809

Family and domain databases

Conserved Domains Database

More...
CDDi
cd00086 homeodomain, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR009057 Homeobox-like_sf
IPR017970 Homeobox_CS
IPR001356 Homeobox_dom
IPR020479 Homeobox_metazoa

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00046 Homeodomain, 1 hit

Protein Motif fingerprint database; a protein domain database

More...
PRINTSi
PR00024 HOMEOBOX

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00389 HOX, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF46689 SSF46689, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS00027 HOMEOBOX_1, 1 hit
PS50071 HOMEOBOX_2, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

P22809-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MLNMESAGVS AAMAGLSKSL TTPFSINDIL TRSNPETRRM SSVDSEPEPE
60 70 80 90 100
KLKPSSDRER SISKSPPLCC RDLGLYKLTQ PKEIQPSARQ PSNYLQYYAA
110 120 130 140 150
AMDNNNHHHQ ATGTSNSSAA DYMQRKLAYF GSTLAAPLDM RRCTSNDSDC
160 170 180 190 200
DSPPPLSSSP SESPLSHDGS GLSRKKRSRA AFSHAQVFEL ERRFAQQRYL
210 220 230 240 250
SGPERSEMAK SLRLTETQVK IWFQNRRYKT KRKQIQQHEA ALLGASKRVP
260 270 280 290 300
VQVLVREDGS TTYAHMAAPG AGHGLDPALI NIYRHQLQLA YGGLPLPQMQ
310 320 330 340 350
MPFPYFYPQH KVPQPIPPPT QSSSFVTASS ASSSPVPIPI PGAVRPQRTP
360 370 380
CPSPNGQMMS VESGAESVHS AAEDVDENVE ID
Length:382
Mass (Da):41,993
Last modified:December 1, 2000 - v3
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i49A8DFE19A2022B9
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti251V → I in AAC37165 (PubMed:8101173).Curated1

Natural variant

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section describes natural variant(s) of the protein sequence.<p><a href='/help/variant' target='_top'>More...</a></p>Natural varianti62I → A in strain: F-96S, F-274F, S-26F, S-94F, S-377F, S-510S, S-521F, S-521S, S-565F, S-968F and US-255F. 1
Natural varianti62I → V in strain: F-775F, S-549S and S-1224F. 1
Natural varianti74G → S in strain: F-775F, S-549S and S-1224F. 1
Natural varianti327T → N in strain: S-26F, S-94F, S-438S, S-510S and S-521F. 1
Natural varianti342G → S in strain: S-26F, S-94F, S-438S, S-510S and S-521F. 1
Natural varianti367S → SGAES in strain: S-521S, S-968F and US-255F. 1
Natural varianti369H → Q in strain: F-611F. 1

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
L17133 mRNA Translation: AAC37165.1
AY369088 Genomic DNA Translation: AAQ73793.1
AY369089 Genomic DNA Translation: AAQ73794.1
AY369090 Genomic DNA Translation: AAQ73795.1
AY369091 Genomic DNA Translation: AAQ73796.1
AY369092 Genomic DNA Translation: AAQ73797.1
AY369093 Genomic DNA Translation: AAQ73798.1
AY369094 Genomic DNA Translation: AAQ73799.1
AY369095 Genomic DNA Translation: AAQ73800.1
AY369096 Genomic DNA Translation: AAQ73801.1
AY369097 Genomic DNA Translation: AAQ73802.1
AY369098 Genomic DNA Translation: AAQ73803.1
AY369099 Genomic DNA Translation: AAQ73804.1
AY369100 Genomic DNA Translation: AAQ73805.1
AY369101 Genomic DNA Translation: AAQ73806.1
AY369102 Genomic DNA Translation: AAQ73807.1
AY369103 Genomic DNA Translation: AAQ73808.1
AY369104 Genomic DNA Translation: AAQ73809.1
AY369105 Genomic DNA Translation: AAQ73810.1
AY369106 Genomic DNA Translation: AAQ73811.1
AY369107 Genomic DNA Translation: AAQ73812.1
AY369108 Genomic DNA Translation: AAQ73813.1
AY369109 Genomic DNA Translation: AAQ73814.1
AY369110 Genomic DNA Translation: AAQ73815.1
AY369111 Genomic DNA Translation: AAQ73816.1
AY369112 Genomic DNA Translation: AAQ73817.1
AY369113 Genomic DNA Translation: AAQ73818.1
AY369114 Genomic DNA Translation: AAQ73819.1
AY369115 Genomic DNA Translation: AAQ73820.1
AE014297 Genomic DNA Translation: AAF55891.1
M27291 Genomic DNA Translation: AAA28618.1

Protein sequence database of the Protein Information Resource

More...
PIRi
C33976

NCBI Reference Sequences

More...
RefSeqi
NP_732637.1, NM_169958.2

Genome annotation databases

Ensembl metazoan genome annotation project

More...
EnsemblMetazoai
FBtr0084087; FBpp0083486; FBgn0004862

Database of genes from NCBI RefSeq genomes

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GeneIDi
42537

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
dme:Dmel_CG7902

UCSC genome browser

More...
UCSCi
CG7902-RA d. melanogaster

Keywords - Coding sequence diversityi

Polymorphism

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L17133 mRNA Translation: AAC37165.1
AY369088 Genomic DNA Translation: AAQ73793.1
AY369089 Genomic DNA Translation: AAQ73794.1
AY369090 Genomic DNA Translation: AAQ73795.1
AY369091 Genomic DNA Translation: AAQ73796.1
AY369092 Genomic DNA Translation: AAQ73797.1
AY369093 Genomic DNA Translation: AAQ73798.1
AY369094 Genomic DNA Translation: AAQ73799.1
AY369095 Genomic DNA Translation: AAQ73800.1
AY369096 Genomic DNA Translation: AAQ73801.1
AY369097 Genomic DNA Translation: AAQ73802.1
AY369098 Genomic DNA Translation: AAQ73803.1
AY369099 Genomic DNA Translation: AAQ73804.1
AY369100 Genomic DNA Translation: AAQ73805.1
AY369101 Genomic DNA Translation: AAQ73806.1
AY369102 Genomic DNA Translation: AAQ73807.1
AY369103 Genomic DNA Translation: AAQ73808.1
AY369104 Genomic DNA Translation: AAQ73809.1
AY369105 Genomic DNA Translation: AAQ73810.1
AY369106 Genomic DNA Translation: AAQ73811.1
AY369107 Genomic DNA Translation: AAQ73812.1
AY369108 Genomic DNA Translation: AAQ73813.1
AY369109 Genomic DNA Translation: AAQ73814.1
AY369110 Genomic DNA Translation: AAQ73815.1
AY369111 Genomic DNA Translation: AAQ73816.1
AY369112 Genomic DNA Translation: AAQ73817.1
AY369113 Genomic DNA Translation: AAQ73818.1
AY369114 Genomic DNA Translation: AAQ73819.1
AY369115 Genomic DNA Translation: AAQ73820.1
AE014297 Genomic DNA Translation: AAF55891.1
M27291 Genomic DNA Translation: AAA28618.1
PIRiC33976
RefSeqiNP_732637.1, NM_169958.2

3D structure databases

SMRiP22809
ModBaseiSearch...

Protein-protein interaction databases

BioGridi67503, 5 interactors
STRINGi7227.FBpp0083486

Proteomic databases

PaxDbiP22809
PRIDEiP22809

Genome annotation databases

EnsemblMetazoaiFBtr0084087; FBpp0083486; FBgn0004862
GeneIDi42537
KEGGidme:Dmel_CG7902
UCSCiCG7902-RA d. melanogaster

Organism-specific databases

Comparative Toxicogenomics Database

More...
CTDi
42537
FlyBaseiFBgn0004862 bap

Phylogenomic databases

eggNOGiKOG0842 Eukaryota
ENOG410XR21 LUCA
InParanoidiP22809
KOiK09995
OMAiFPYFYPQ
OrthoDBi858478at2759
PhylomeDBiP22809

Enzyme and pathway databases

SignaLinkiP22809

Miscellaneous databases

Database of phenotypes from RNA interference screens in Drosophila and Homo sapiens

More...
GenomeRNAii
42537

Protein Ontology

More...
PROi
PR:P22809

Gene expression databases

BgeeiFBgn0004862 Expressed in 24 organ(s), highest expression level in embryo
ExpressionAtlasiP22809 differential
GenevisibleiP22809 DM

Family and domain databases

CDDicd00086 homeodomain, 1 hit
InterProiView protein in InterPro
IPR009057 Homeobox-like_sf
IPR017970 Homeobox_CS
IPR001356 Homeobox_dom
IPR020479 Homeobox_metazoa
PfamiView protein in Pfam
PF00046 Homeodomain, 1 hit
PRINTSiPR00024 HOMEOBOX
SMARTiView protein in SMART
SM00389 HOX, 1 hit
SUPFAMiSSF46689 SSF46689, 1 hit
PROSITEiView protein in PROSITE
PS00027 HOMEOBOX_1, 1 hit
PS50071 HOMEOBOX_2, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiBAGP_DROME
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: P22809
Secondary accession number(s): Q24254
, Q6UJA4, Q6UJA5, Q6UJA8, Q6UJA9, Q6UJB1, Q6UJB2, Q9VDA6
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: August 1, 1991
Last sequence update: December 1, 2000
Last modified: December 11, 2019
This is version 153 of the entry and version 3 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programDrosophila annotation project

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Drosophila
    Drosophila: entries, gene names and cross-references to FlyBase
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