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UniProtKB - P22452 (RL39_HALMA)
Protein
50S ribosomal protein L39e
Gene
rpl39e
Organism
Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) (Halobacterium marismortui)
Status
Functioni
Binds to the 23S rRNA. Forms part of the polypeptide exit tunnel.
GO - Molecular functioni
- rRNA binding Source: UniProtKB-KW
- structural constituent of ribosome Source: InterPro
GO - Biological processi
- translation Source: UniProtKB-UniRule
Keywordsi
Molecular function | Ribonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding |
Names & Taxonomyi
Protein namesi | Recommended name: 50S ribosomal protein L39eAlternative name(s): Hl39e Hl46e |
Gene namesi | Name:rpl39e Ordered Locus Names:rrnAC3112 |
Organismi | Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) (Halobacterium marismortui) |
Taxonomic identifieri | 272569 [NCBI] |
Taxonomic lineagei | Archaea › Euryarchaeota › Stenosarchaea group › Halobacteria › Halobacteriales › Haloarculaceae › Haloarcula › |
Proteomesi |
|
PTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Initiator methioninei | Removed1 Publication | |||
ChainiPRO_0000127047 | 2 – 50 | 50S ribosomal protein L39eAdd BLAST | 49 |
Interactioni
Subunit structurei
Part of the 50S ribosomal subunit.
Interacts weakly with protein L23.
2 PublicationsProtein-protein interaction databases
IntActi | P22452, 2 interactors |
STRINGi | 272569.rrnAC3112 |
Structurei
Secondary structure
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details3D structure databases
AlphaFoldDBi | P22452 |
SMRi | P22452 |
ModBasei | Search... |
PDBe-KBi | Search... |
Miscellaneous databases
EvolutionaryTracei | P22452 |
Family & Domainsi
Sequence similaritiesi
Belongs to the eukaryotic ribosomal protein eL39 family.Curated
Phylogenomic databases
eggNOGi | arCOG04177, Archaea |
HOGENOMi | CLU_181948_4_0_2 |
OMAi | PAWVIMK |
Family and domain databases
Gene3Di | 1.10.1620.10, 1 hit |
HAMAPi | MF_00629, Ribosomal_L39e, 1 hit |
InterProi | View protein in InterPro IPR000077, Ribosomal_L39 IPR020083, Ribosomal_L39_CS IPR023626, Ribosomal_L39e_dom_sf |
Pfami | View protein in Pfam PF00832, Ribosomal_L39, 1 hit |
SUPFAMi | SSF48662, SSF48662, 1 hit |
PROSITEi | View protein in PROSITE PS00051, RIBOSOMAL_L39E, 1 hit |
i Sequence
Sequence statusi: Complete.
: The displayed sequence is further processed into a mature form. Sequence processingi
P22452-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MGKKSKATKK RLAKLDNQNS RVPAWVMLKT DREVQRNHKR RHWRRNDTDE
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | X55007 Genomic DNA Translation: CAA38750.1 AY596297 Genomic DNA Translation: AAV47823.1 |
PIRi | S13066, R6HS39 |
RefSeqi | WP_004518346.1, NZ_CP039138.1 |
Genome annotation databases
EnsemblBacteriai | AAV47823; AAV47823; rrnAC3112 |
GeneIDi | 40153923 64823662 |
KEGGi | hma:rrnAC3112 |
PATRICi | fig|272569.17.peg.3654 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | X55007 Genomic DNA Translation: CAA38750.1 AY596297 Genomic DNA Translation: AAV47823.1 |
PIRi | S13066, R6HS39 |
RefSeqi | WP_004518346.1, NZ_CP039138.1 |
3D structure databases
Select the link destinations: PDBei RCSB PDBi PDBji Links Updated | PDB entry | Method | Resolution (Å) | Chain | Positions | PDBsum |
1FFK | X-ray | 2.40 | Y | 2-50 | [»] | |
1JJ2 | X-ray | 2.40 | 1 | 2-49 | [»] | |
1K73 | X-ray | 3.01 | 3 | 2-49 | [»] | |
1K8A | X-ray | 3.00 | 3 | 2-49 | [»] | |
1K9M | X-ray | 3.00 | 3 | 2-49 | [»] | |
1KC8 | X-ray | 3.01 | 3 | 2-49 | [»] | |
1KD1 | X-ray | 3.00 | 3 | 2-49 | [»] | |
1KQS | X-ray | 3.10 | 1 | 2-49 | [»] | |
1M1K | X-ray | 3.20 | 3 | 2-49 | [»] | |
1M90 | X-ray | 2.80 | 3 | 2-49 | [»] | |
1N8R | X-ray | 3.00 | 3 | 2-49 | [»] | |
1NJI | X-ray | 3.00 | 3 | 2-49 | [»] | |
1Q7Y | X-ray | 3.20 | 3 | 2-49 | [»] | |
1Q81 | X-ray | 2.95 | 3 | 2-49 | [»] | |
1Q82 | X-ray | 2.98 | 3 | 2-49 | [»] | |
1Q86 | X-ray | 3.00 | 3 | 2-49 | [»] | |
1QVF | X-ray | 3.10 | 1 | 2-49 | [»] | |
1QVG | X-ray | 2.90 | 1 | 2-49 | [»] | |
1S72 | X-ray | 2.40 | 2 | 1-50 | [»] | |
1VQ4 | X-ray | 2.70 | 2 | 1-50 | [»] | |
1VQ5 | X-ray | 2.60 | 2 | 1-50 | [»] | |
1VQ6 | X-ray | 2.70 | 2 | 1-50 | [»] | |
1VQ7 | X-ray | 2.50 | 2 | 1-50 | [»] | |
1VQ8 | X-ray | 2.20 | 2 | 1-50 | [»] | |
1VQ9 | X-ray | 2.40 | 2 | 1-50 | [»] | |
1VQK | X-ray | 2.30 | 2 | 1-50 | [»] | |
1VQL | X-ray | 2.30 | 2 | 1-50 | [»] | |
1VQM | X-ray | 2.30 | 2 | 1-50 | [»] | |
1VQN | X-ray | 2.40 | 2 | 1-50 | [»] | |
1VQO | X-ray | 2.20 | 2 | 1-50 | [»] | |
1VQP | X-ray | 2.25 | 2 | 1-50 | [»] | |
1W2B | X-ray | 3.50 | 1 | 2-49 | [»] | |
1YHQ | X-ray | 2.40 | 2 | 1-50 | [»] | |
1YI2 | X-ray | 2.65 | 2 | 1-50 | [»] | |
1YIJ | X-ray | 2.60 | 2 | 1-50 | [»] | |
1YIT | X-ray | 2.80 | 2 | 1-50 | [»] | |
1YJ9 | X-ray | 2.90 | 2 | 1-50 | [»] | |
1YJN | X-ray | 3.00 | 2 | 1-50 | [»] | |
1YJW | X-ray | 2.90 | 2 | 1-50 | [»] | |
2OTJ | X-ray | 2.90 | 2 | 1-50 | [»] | |
2OTL | X-ray | 2.70 | 2 | 1-50 | [»] | |
2QA4 | X-ray | 3.00 | 2 | 1-50 | [»] | |
2QEX | X-ray | 2.90 | 2 | 1-50 | [»] | |
3CC2 | X-ray | 2.40 | 2 | 1-50 | [»] | |
3CC4 | X-ray | 2.70 | 2 | 1-50 | [»] | |
3CC7 | X-ray | 2.70 | 2 | 1-50 | [»] | |
3CCE | X-ray | 2.75 | 2 | 1-50 | [»] | |
3CCJ | X-ray | 2.70 | 2 | 1-50 | [»] | |
3CCL | X-ray | 2.90 | 2 | 1-50 | [»] | |
3CCM | X-ray | 2.55 | 2 | 1-50 | [»] | |
3CCQ | X-ray | 2.90 | 2 | 1-50 | [»] | |
3CCR | X-ray | 3.00 | 2 | 1-50 | [»] | |
3CCS | X-ray | 2.95 | 2 | 1-50 | [»] | |
3CCU | X-ray | 2.80 | 2 | 1-50 | [»] | |
3CCV | X-ray | 2.90 | 2 | 1-50 | [»] | |
3CD6 | X-ray | 2.75 | 2 | 1-50 | [»] | |
3CMA | X-ray | 2.80 | 2 | 1-50 | [»] | |
3CME | X-ray | 2.95 | 2 | 1-50 | [»] | |
3CPW | X-ray | 2.70 | 1 | 1-50 | [»] | |
3CXC | X-ray | 3.00 | 1 | 2-50 | [»] | |
3G4S | X-ray | 3.20 | 2 | 1-50 | [»] | |
3G6E | X-ray | 2.70 | 2 | 1-50 | [»] | |
3G71 | X-ray | 2.85 | 2 | 1-50 | [»] | |
3I55 | X-ray | 3.11 | 2 | 1-50 | [»] | |
3I56 | X-ray | 2.90 | 2 | 1-50 | [»] | |
3OW2 | X-ray | 2.70 | 1 | 2-50 | [»] | |
4ADX | electron microscopy | 6.60 | 2 | 1-50 | [»] | |
4V9F | X-ray | 2.40 | 2 | 1-50 | [»] | |
AlphaFoldDBi | P22452 | |||||
SMRi | P22452 | |||||
ModBasei | Search... | |||||
PDBe-KBi | Search... |
Protein-protein interaction databases
IntActi | P22452, 2 interactors |
STRINGi | 272569.rrnAC3112 |
Genome annotation databases
EnsemblBacteriai | AAV47823; AAV47823; rrnAC3112 |
GeneIDi | 40153923 64823662 |
KEGGi | hma:rrnAC3112 |
PATRICi | fig|272569.17.peg.3654 |
Phylogenomic databases
eggNOGi | arCOG04177, Archaea |
HOGENOMi | CLU_181948_4_0_2 |
OMAi | PAWVIMK |
Miscellaneous databases
EvolutionaryTracei | P22452 |
Family and domain databases
Gene3Di | 1.10.1620.10, 1 hit |
HAMAPi | MF_00629, Ribosomal_L39e, 1 hit |
InterProi | View protein in InterPro IPR000077, Ribosomal_L39 IPR020083, Ribosomal_L39_CS IPR023626, Ribosomal_L39e_dom_sf |
Pfami | View protein in Pfam PF00832, Ribosomal_L39, 1 hit |
SUPFAMi | SSF48662, SSF48662, 1 hit |
PROSITEi | View protein in PROSITE PS00051, RIBOSOMAL_L39E, 1 hit |
MobiDBi | Search... |
Entry informationi
Entry namei | RL39_HALMA | |
Accessioni | P22452Primary (citable) accession number: P22452 Secondary accession number(s): Q5UY30 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | August 1, 1991 |
Last sequence update: | January 23, 2007 | |
Last modified: | May 25, 2022 | |
This is version 141 of the entry and version 2 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Prokaryotic Protein Annotation Program |
Miscellaneousi
Keywords - Technical termi
3D-structure, Direct protein sequencing, Reference proteomeDocuments
- Ribosomal proteins
Ribosomal proteins families and list of entries - PDB cross-references
Index of Protein Data Bank (PDB) cross-references - SIMILARITY comments
Index of protein domains and families