UniProtKB - P21589 (5NTD_HUMAN)
Protein
5'-nucleotidase
Gene
NT5E
Organism
Homo sapiens (Human)
Status
Functioni
Hydrolyzes extracellular nucleotides into membrane permeable nucleosides. Exhibits AMP-, NAD-, and NMN-nucleosidase activities.1 Publication
Catalytic activityi
- EC:3.1.3.5
Cofactori
Sites
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Metal bindingi | 36 | Zinc 1Combined sources1 Publication | 1 | |
Metal bindingi | 38 | Zinc 1Combined sources1 Publication | 1 | |
Metal bindingi | 85 | Zinc 1Combined sources1 Publication | 1 | |
Metal bindingi | 85 | Zinc 2Combined sources1 Publication | 1 | |
Metal bindingi | 117 | Zinc 2Combined sources1 Publication | 1 | |
Sitei | 118 | Transition state stabilizer1 Publication | 1 | |
Sitei | 121 | Transition state stabilizer1 Publication | 1 | |
Metal bindingi | 220 | Zinc 2Combined sources1 Publication | 1 | |
Metal bindingi | 243 | Zinc 2Combined sources1 Publication | 1 | |
Binding sitei | 245 | SubstrateCombined sources1 Publication | 1 | |
Binding sitei | 354 | SubstrateCombined sources1 Publication | 1 | |
Binding sitei | 390 | SubstrateCombined sources1 Publication | 1 | |
Binding sitei | 395 | SubstrateCombined sources1 Publication | 1 | |
Binding sitei | 417 | SubstrateCombined sources1 Publication | 1 |
GO - Molecular functioni
- 5'-nucleotidase activity Source: CACAO
- metal ion binding Source: UniProtKB-KW
- nucleotide binding Source: UniProtKB-KW
GO - Biological processi
- adenosine biosynthetic process Source: Ensembl
- AMP catabolic process Source: GO_Central
- DNA metabolic process Source: ProtInc
- leukocyte cell-cell adhesion Source: CACAO
- NAD metabolic process Source: Reactome
- negative regulation of inflammatory response Source: Ensembl
- purine nucleotide catabolic process Source: Reactome
- pyrimidine nucleoside catabolic process Source: Reactome
Keywordsi
Molecular function | Hydrolase |
Ligand | Metal-binding, Nucleotide-binding, Zinc |
Enzyme and pathway databases
BioCyci | MetaCyc:HS05981-MONOMER |
PathwayCommonsi | P21589 |
Reactomei | R-HSA-196807, Nicotinate metabolism R-HSA-73621, Pyrimidine catabolism R-HSA-74259, Purine catabolism R-HSA-9660826, Purinergic signaling in leishmaniasis infection |
SIGNORi | P21589 |
Names & Taxonomyi
Protein namesi | Recommended name: 5'-nucleotidase (EC:3.1.3.5)Short name: 5'-NT Alternative name(s): Ecto-5'-nucleotidase CD_antigen: CD73 |
Gene namesi | Name:NT5E Synonyms:NT5, NTE |
Organismi | Homo sapiens (Human) |
Taxonomic identifieri | 9606 [NCBI] |
Taxonomic lineagei | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Proteomesi |
|
Organism-specific databases
EuPathDBi | HostDB:ENSG00000135318.11 |
HGNCi | HGNC:8021, NT5E |
MIMi | 129190, gene |
neXtProti | NX_P21589 |
Subcellular locationi
Plasma membrane
Cytosol
- cytosol Source: HPA
Extracellular region or secreted
- extracellular exosome Source: UniProtKB
Nucleus
- nucleoplasm Source: HPA
Plasma Membrane
- plasma membrane Source: HPA
Other locations
- anchored component of membrane Source: UniProtKB-KW
- cell surface Source: UniProtKB
- membrane Source: ProtInc
Keywords - Cellular componenti
Cell membrane, MembranePathology & Biotechi
Involvement in diseasei
Calcification of joints and arteries (CALJA)2 Publications
The disease is caused by mutations affecting the gene represented in this entry.
Disease descriptionA condition characterized by adult-onset calcification of the lower extremity arteries, including the iliac, femoral and tibial arteries, and hand and foot capsule joints. Age of onset has been reported as early as the second decade of life, usually involving intense joint pain or calcification in the hands.
Related information in OMIMFeature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Natural variantiVAR_065185 | 358 | C → Y in CALJA; absence from the plasma-membrane; exhibits no catalytic AMPase activity. 2 PublicationsCorresponds to variant dbSNP:rs387906620EnsemblClinVar. | 1 |
Keywords - Diseasei
Disease mutationOrganism-specific databases
DisGeNETi | 4907 |
MalaCardsi | NT5E |
MIMi | 211800, phenotype |
OpenTargetsi | ENSG00000135318 |
Orphaneti | 289601, Hereditary arterial and articular multiple calcification syndrome |
PharmGKBi | PA31804 |
Miscellaneous databases
Pharosi | P21589, Tchem |
Chemistry databases
ChEMBLi | CHEMBL5957 |
DrugBanki | DB00987, Cytarabine DB00806, Pentoxifylline |
GuidetoPHARMACOLOGYi | 1232 |
Polymorphism and mutation databases
BioMutai | NT5E |
DMDMi | 112825 |
PTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Signal peptidei | 1 – 26 | 1 PublicationAdd BLAST | 26 | |
ChainiPRO_0000000015 | 27 – 549 | 5'-nucleotidase1 PublicationAdd BLAST | 523 | |
PropeptideiPRO_0000000016 | 550 – 574 | Removed in mature formAdd BLAST | 25 |
Amino acid modifications
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Disulfide bondi | 51 ↔ 57 | Combined sources1 Publication | ||
Glycosylationi | 53 | N-linked (GlcNAc...) asparagineSequence analysis | 1 | |
Glycosylationi | 311 | N-linked (GlcNAc...) asparagineCombined sources2 Publications | 1 | |
Glycosylationi | 333 | N-linked (GlcNAc...) asparagine2 Publications | 1 | |
Disulfide bondi | 353 ↔ 358 | Combined sources1 Publication | ||
Disulfide bondi | 365 ↔ 387 | Combined sources1 Publication | ||
Glycosylationi | 403 | N-linked (GlcNAc...) asparagine1 Publication | 1 | |
Disulfide bondi | 476 ↔ 479 | Combined sources1 Publication | ||
Lipidationi | 549 | GPI-anchor amidated serine1 Publication | 1 |
Keywords - PTMi
Disulfide bond, Glycoprotein, GPI-anchor, LipoproteinProteomic databases
CPTACi | CPTAC-552 |
EPDi | P21589 |
jPOSTi | P21589 |
MassIVEi | P21589 |
MaxQBi | P21589 |
PaxDbi | P21589 |
PeptideAtlasi | P21589 |
PRIDEi | P21589 |
ProteomicsDBi | 53883 [P21589-1] 53884 [P21589-2] |
PTM databases
DEPODi | NT5E |
GlyGeni | P21589, 4 sites |
iPTMneti | P21589 |
PhosphoSitePlusi | P21589 |
SwissPalmi | P21589 |
Expressioni
Gene expression databases
Bgeei | ENSG00000135318, Expressed in stromal cell of endometrium and 232 other tissues |
ExpressionAtlasi | P21589, baseline and differential |
Genevisiblei | P21589, HS |
Organism-specific databases
HPAi | ENSG00000135318, Low tissue specificity |
Interactioni
Subunit structurei
Homodimer.
1 PublicationBinary interactionsi
Hide detailsP21589
With | #Exp. | IntAct |
---|---|---|
RNF24 - isoform 2 [Q9Y225-2] | 3 | EBI-6393623,EBI-13044680 |
ZNRF4 [Q8WWF5] | 3 | EBI-6393623,EBI-2129267 |
Protein-protein interaction databases
BioGRIDi | 110962, 61 interactors |
DIPi | DIP-59992N |
IntActi | P21589, 41 interactors |
STRINGi | 9606.ENSP00000257770 |
Chemistry databases
BindingDBi | P21589 |
Miscellaneous databases
RNActi | P21589, protein |
Structurei
Secondary structure
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details3D structure databases
SMRi | P21589 |
ModBasei | Search... |
PDBe-KBi | Search... |
Family & Domainsi
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 500 – 506 | Substrate bindingCombined sources1 Publication | 7 |
Sequence similaritiesi
Belongs to the 5'-nucleotidase family.Curated
Keywords - Domaini
SignalPhylogenomic databases
eggNOGi | KOG4419, Eukaryota |
GeneTreei | ENSGT00530000063775 |
HOGENOMi | CLU_005854_7_1_1 |
OMAi | NYDCDSP |
OrthoDBi | 900867at2759 |
PhylomeDBi | P21589 |
TreeFami | TF323589 |
Family and domain databases
Gene3Di | 3.60.21.10, 1 hit 3.90.780.10, 1 hit |
InterProi | View protein in InterPro IPR008334, 5'-Nucleotdase_C IPR036907, 5'-Nucleotdase_C_sf IPR006146, 5'-Nucleotdase_CS IPR006179, 5_nucleotidase/apyrase IPR004843, Calcineurin-like_PHP_ApaH IPR029052, Metallo-depent_PP-like |
PANTHERi | PTHR11575, PTHR11575, 1 hit |
Pfami | View protein in Pfam PF02872, 5_nucleotid_C, 1 hit PF00149, Metallophos, 1 hit |
PRINTSi | PR01607, APYRASEFAMLY |
SUPFAMi | SSF55816, SSF55816, 1 hit |
PROSITEi | View protein in PROSITE PS00785, 5_NUCLEOTIDASE_1, 1 hit PS00786, 5_NUCLEOTIDASE_2, 1 hit |
s (2+)i Sequence
Sequence statusi: Complete.
: The displayed sequence is further processed into a mature form. Sequence processingi
This entry describes 2 produced by isoformsialternative splicing. AlignAdd to basketThis entry has 2 described isoforms and 3 potential isoforms that are computationally mapped.Show allAlign All
Isoform 1 (identifier: P21589-1) [UniParc]FASTAAdd to basket
This isoform has been chosen as the sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. canonicali
10 20 30 40 50
MCPRAARAPA TLLLALGAVL WPAAGAWELT ILHTNDVHSR LEQTSEDSSK
60 70 80 90 100
CVNASRCMGG VARLFTKVQQ IRRAEPNVLL LDAGDQYQGT IWFTVYKGAE
110 120 130 140 150
VAHFMNALRY DAMALGNHEF DNGVEGLIEP LLKEAKFPIL SANIKAKGPL
160 170 180 190 200
ASQISGLYLP YKVLPVGDEV VGIVGYTSKE TPFLSNPGTN LVFEDEITAL
210 220 230 240 250
QPEVDKLKTL NVNKIIALGH SGFEMDKLIA QKVRGVDVVV GGHSNTFLYT
260 270 280 290 300
GNPPSKEVPA GKYPFIVTSD DGRKVPVVQA YAFGKYLGYL KIEFDERGNV
310 320 330 340 350
ISSHGNPILL NSSIPEDPSI KADINKWRIK LDNYSTQELG KTIVYLDGSS
360 370 380 390 400
QSCRFRECNM GNLICDAMIN NNLRHTDEMF WNHVSMCILN GGGIRSPIDE
410 420 430 440 450
RNNGTITWEN LAAVLPFGGT FDLVQLKGST LKKAFEHSVH RYGQSTGEFL
460 470 480 490 500
QVGGIHVVYD LSRKPGDRVV KLDVLCTKCR VPSYDPLKMD EVYKVILPNF
510 520 530 540 550
LANGGDGFQM IKDELLRHDS GDQDINVVST YISKMKVIYP AVEGRIKFST
560 570
GSHCHGSFSL IFLSLWAVIF VLYQ
Computationally mapped potential isoform sequencesi
There are 3 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basketQ96B60 | Q96B60_HUMAN | Ecto-5'-nucleotidase | NT5E hCG_401111 | 264 | Annotation score: | ||
H0Y7R7 | H0Y7R7_HUMAN | 5'-nucleotidase | NT5E | 230 | Annotation score: | ||
H0Y3X5 | H0Y3X5_HUMAN | 5'-nucleotidase | NT5E | 179 | Annotation score: |
Natural variant
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Natural variantiVAR_065185 | 358 | C → Y in CALJA; absence from the plasma-membrane; exhibits no catalytic AMPase activity. 2 PublicationsCorresponds to variant dbSNP:rs387906620EnsemblClinVar. | 1 | |
Natural variantiVAR_022091 | 376 | T → A1 PublicationCorresponds to variant dbSNP:rs2229523Ensembl. | 1 | |
Natural variantiVAR_048103 | 379 | M → T. Corresponds to variant dbSNP:rs2229524Ensembl. | 1 |
Alternative sequence
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Alternative sequenceiVSP_043076 | 404 – 453 | Missing in isoform 2. 1 PublicationAdd BLAST | 50 |
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | X55740 mRNA Translation: CAA39271.1 AK075008 mRNA Translation: BAG52050.1 AL135903 Genomic DNA No translation available. AL589666 Genomic DNA No translation available. U21730 Genomic DNA Translation: AAA96950.1 AF069067 Genomic DNA Translation: AAC98672.1 |
CCDSi | CCDS5002.1 [P21589-1] CCDS56439.1 [P21589-2] |
PIRi | S11032 |
RefSeqi | NP_001191742.1, NM_001204813.1 [P21589-2] NP_002517.1, NM_002526.3 [P21589-1] |
Genome annotation databases
Ensembli | ENST00000257770; ENSP00000257770; ENSG00000135318 [P21589-1] ENST00000369651; ENSP00000358665; ENSG00000135318 [P21589-2] |
GeneIDi | 4907 |
KEGGi | hsa:4907 |
UCSCi | uc003pko.5, human [P21589-1] |
Keywords - Coding sequence diversityi
Alternative splicing, PolymorphismSimilar proteinsi
Cross-referencesi
Web resourcesi
Atlas of Genetics and Cytogenetics in Oncology and Haematology |
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | X55740 mRNA Translation: CAA39271.1 AK075008 mRNA Translation: BAG52050.1 AL135903 Genomic DNA No translation available. AL589666 Genomic DNA No translation available. U21730 Genomic DNA Translation: AAA96950.1 AF069067 Genomic DNA Translation: AAC98672.1 |
CCDSi | CCDS5002.1 [P21589-1] CCDS56439.1 [P21589-2] |
PIRi | S11032 |
RefSeqi | NP_001191742.1, NM_001204813.1 [P21589-2] NP_002517.1, NM_002526.3 [P21589-1] |
3D structure databases
Select the link destinations: PDBei RCSB PDBi PDBji Links Updated | PDB entry | Method | Resolution (Å) | Chain | Positions | PDBsum |
4H1S | X-ray | 2.20 | A/B | 27-549 | [»] | |
4H1Y | X-ray | 1.58 | P | 27-549 | [»] | |
4H2B | X-ray | 1.70 | A | 27-549 | [»] | |
4H2F | X-ray | 1.85 | A | 27-549 | [»] | |
4H2G | X-ray | 1.55 | A | 27-549 | [»] | |
4H2I | X-ray | 2.00 | A | 27-549 | [»] | |
6HXW | X-ray | 2.78 | A/B | 27-553 | [»] | |
6S7F | X-ray | 2.05 | A | 27-549 | [»] | |
6S7H | X-ray | 1.85 | A | 27-549 | [»] | |
6TVE | X-ray | 1.05 | P | 27-549 | [»] | |
6TVG | X-ray | 1.48 | A | 27-549 | [»] | |
6TVX | X-ray | 2.60 | A | 27-549 | [»] | |
6TW0 | X-ray | 2.50 | A | 27-549 | [»] | |
6TWA | X-ray | 2.00 | A | 27-549 | [»] | |
6TWF | X-ray | 2.50 | A | 27-549 | [»] | |
6XUE | X-ray | 1.94 | A/B | 27-549 | [»] | |
6XUG | X-ray | 2.09 | A/B | 27-549 | [»] | |
6XUQ | X-ray | 1.97 | A | 27-549 | [»] | |
6Z9B | X-ray | 2.17 | A | 27-549 | [»] | |
SMRi | P21589 | |||||
ModBasei | Search... | |||||
PDBe-KBi | Search... |
Protein-protein interaction databases
BioGRIDi | 110962, 61 interactors |
DIPi | DIP-59992N |
IntActi | P21589, 41 interactors |
STRINGi | 9606.ENSP00000257770 |
Chemistry databases
BindingDBi | P21589 |
ChEMBLi | CHEMBL5957 |
DrugBanki | DB00987, Cytarabine DB00806, Pentoxifylline |
GuidetoPHARMACOLOGYi | 1232 |
PTM databases
DEPODi | NT5E |
GlyGeni | P21589, 4 sites |
iPTMneti | P21589 |
PhosphoSitePlusi | P21589 |
SwissPalmi | P21589 |
Polymorphism and mutation databases
BioMutai | NT5E |
DMDMi | 112825 |
Proteomic databases
CPTACi | CPTAC-552 |
EPDi | P21589 |
jPOSTi | P21589 |
MassIVEi | P21589 |
MaxQBi | P21589 |
PaxDbi | P21589 |
PeptideAtlasi | P21589 |
PRIDEi | P21589 |
ProteomicsDBi | 53883 [P21589-1] 53884 [P21589-2] |
Protocols and materials databases
ABCDi | P21589, 24 sequenced antibodies |
Antibodypediai | 3007, 1234 antibodies |
DNASUi | 4907 |
Genome annotation databases
Ensembli | ENST00000257770; ENSP00000257770; ENSG00000135318 [P21589-1] ENST00000369651; ENSP00000358665; ENSG00000135318 [P21589-2] |
GeneIDi | 4907 |
KEGGi | hsa:4907 |
UCSCi | uc003pko.5, human [P21589-1] |
Organism-specific databases
CTDi | 4907 |
DisGeNETi | 4907 |
EuPathDBi | HostDB:ENSG00000135318.11 |
GeneCardsi | NT5E |
HGNCi | HGNC:8021, NT5E |
HPAi | ENSG00000135318, Low tissue specificity |
MalaCardsi | NT5E |
MIMi | 129190, gene 211800, phenotype |
neXtProti | NX_P21589 |
OpenTargetsi | ENSG00000135318 |
Orphaneti | 289601, Hereditary arterial and articular multiple calcification syndrome |
PharmGKBi | PA31804 |
GenAtlasi | Search... |
Phylogenomic databases
eggNOGi | KOG4419, Eukaryota |
GeneTreei | ENSGT00530000063775 |
HOGENOMi | CLU_005854_7_1_1 |
OMAi | NYDCDSP |
OrthoDBi | 900867at2759 |
PhylomeDBi | P21589 |
TreeFami | TF323589 |
Enzyme and pathway databases
BioCyci | MetaCyc:HS05981-MONOMER |
PathwayCommonsi | P21589 |
Reactomei | R-HSA-196807, Nicotinate metabolism R-HSA-73621, Pyrimidine catabolism R-HSA-74259, Purine catabolism R-HSA-9660826, Purinergic signaling in leishmaniasis infection |
SIGNORi | P21589 |
Miscellaneous databases
BioGRID-ORCSi | 4907, 2 hits in 846 CRISPR screens |
ChiTaRSi | NT5E, human |
GeneWikii | NT5E |
GenomeRNAii | 4907 |
Pharosi | P21589, Tchem |
PROi | PR:P21589 |
RNActi | P21589, protein |
SOURCEi | Search... |
Gene expression databases
Bgeei | ENSG00000135318, Expressed in stromal cell of endometrium and 232 other tissues |
ExpressionAtlasi | P21589, baseline and differential |
Genevisiblei | P21589, HS |
Family and domain databases
Gene3Di | 3.60.21.10, 1 hit 3.90.780.10, 1 hit |
InterProi | View protein in InterPro IPR008334, 5'-Nucleotdase_C IPR036907, 5'-Nucleotdase_C_sf IPR006146, 5'-Nucleotdase_CS IPR006179, 5_nucleotidase/apyrase IPR004843, Calcineurin-like_PHP_ApaH IPR029052, Metallo-depent_PP-like |
PANTHERi | PTHR11575, PTHR11575, 1 hit |
Pfami | View protein in Pfam PF02872, 5_nucleotid_C, 1 hit PF00149, Metallophos, 1 hit |
PRINTSi | PR01607, APYRASEFAMLY |
SUPFAMi | SSF55816, SSF55816, 1 hit |
PROSITEi | View protein in PROSITE PS00785, 5_NUCLEOTIDASE_1, 1 hit PS00786, 5_NUCLEOTIDASE_2, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | 5NTD_HUMAN | |
Accessioni | P21589Primary (citable) accession number: P21589 Secondary accession number(s): B3KQI8, O75520, Q5W116 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | May 1, 1991 |
Last sequence update: | May 1, 1991 | |
Last modified: | December 2, 2020 | |
This is version 212 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Chordata Protein Annotation Program | |
Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. |
Miscellaneousi
Keywords - Technical termi
3D-structure, Direct protein sequencing, Reference proteomeDocuments
- Human chromosome 6
Human chromosome 6: entries, gene names and cross-references to MIM - Human polymorphisms and disease mutations
Index of human polymorphisms and disease mutations - MIM cross-references
Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot - PDB cross-references
Index of Protein Data Bank (PDB) cross-references - SIMILARITY comments
Index of protein domains and families - Human entries with polymorphisms or disease mutations
List of human entries with polymorphisms or disease mutations - Human cell differentiation molecules
CD nomenclature of surface proteins of human leucocytes and list of entries