RAB4A

Functionⁱ

Protein transport. Probably involved in vesicular traffic (By similarity).By similarity

Caution

It is uncertain whether Met-1 or Met-6 is the initiator.Curated

Regions

Feature key	Position(s)	DescriptionActions	Length
Nucleotide bindingⁱ	20 – 28	GTP1 Publication	9
Nucleotide bindingⁱ	68 – 72	GTP1 Publication	5
Nucleotide bindingⁱ	126 – 129	GTP1 Publication	4
Nucleotide bindingⁱ	156 – 158	GTP1 Publication	3

GO - Molecular functionⁱ

ATPase activator activity Source: Ensembl
ATPase binding Source: Ensembl
GDP binding
Source: UniProtKB
Inferred from direct assayⁱ
- 15907487
- 16034420
GTPase activity
Source: UniProtKB
Inferred from direct assayⁱ
GTP binding
Source: UniProtKB
Inferred from direct assayⁱ
- 15907487
- 16034420
ionotropic glutamate receptor binding Source: Ensembl
protein transporter activity Source: Ensembl
syntaxin binding Source: Ensembl

View the complete GO annotation on QuickGO ...

GO - Biological processⁱ

antigen processing and presentation
Source: UniProtKB
Inferred from mutant phenotypeⁱ
- 19717423
intracellular protein transport
Source: GO_Central
Inferred from biological aspect of ancestorⁱ
- 21873635
phosphatidylinositol biosynthetic process Source: Reactome
Rab protein signal transduction
Source: GO_Central
Inferred from biological aspect of ancestorⁱ
- 21873635
regulation of endocytosis
Source: GO_Central
Inferred from biological aspect of ancestorⁱ
- 21873635

View the complete GO annotation on QuickGO ...

Keywordsⁱ

Biological process	Protein transport, Transport
Ligand	GTP-binding, Nucleotide-binding

Enzyme and pathway databases

Reactomeⁱ	R-HSA-1445148 Translocation of SLC2A4 (GLUT4) to the plasma membrane R-HSA-1660499 Synthesis of PIPs at the plasma membrane R-HSA-8854214 TBC/RABGAPs R-HSA-8873719 RAB geranylgeranylation R-HSA-8875656 MET receptor recycling
SignaLinkⁱ	P20338
SIGNORⁱ	P20338

Protein family/group databases

MoonDBⁱ	P20338 Predicted

MoonDBⁱ

P20338 Predicted

Names & Taxonomyⁱ

Protein namesⁱ	Recommended name: Ras-related protein Rab-4A
Gene namesⁱ	Name:RAB4A Synonyms:RAB4
Organismⁱ	Homo sapiens (Human)
Taxonomic identifierⁱ	9606 [NCBI]
Taxonomic lineageⁱ	cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Dipnotetrapodomorpha › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Boreoeutheria › Euarchontoglires › Primates › Haplorrhini › Simiiformes › Catarrhini › Hominoidea › Hominidae › Homininae › Homo
Proteomesⁱ	UP000005640 Componentⁱ: Chromosome 1

Organism-specific databases

EuPathDBⁱ	HostDB:ENSG00000168118.11
Human Gene Nomenclature Database More...HGNCⁱ	HGNC:9781 RAB4A
MIMⁱ	179511 gene
neXtProtⁱ	NX_P20338

Keywords - Cellular componentⁱ

Cytoplasm, Endosome, Membrane

Pathology & Biotechⁱ

Mutagenesis

Feature key	Position(s)	DescriptionActions	Graphical view	Length
Mutagenesisⁱ	51	G → A: 10-fold decrease in ZFYVE20 binding affinity. 1 Publication		1
Mutagenesisⁱ	51	G → L: 10-fold decrease in ZFYVE20 binding affinity. 1 Publication		1

Organism-specific databases

DisGeNET More...DisGeNETⁱ	5867
Open Targets More...OpenTargetsⁱ	ENSG00000168118
PharmGKBⁱ	PA34141

Polymorphism and mutation databases

DMDMⁱ	460018296

DMDMⁱ

460018296

PTM / Processingⁱ

Molecule processing

Feature key	Position(s)	DescriptionActions	Graphical view	Length
ChainⁱPRO_0000121093	1 – 218	Ras-related protein Rab-4AAdd BLAST		218

Amino acid modifications

Feature key	Position(s)	DescriptionActions	Length
Modified residueⁱ	190	PhosphoserineCombined sources	1
Modified residueⁱ	204	Phosphoserine; by CDK11 Publication	1
Lipidationⁱ	216	S-geranylgeranyl cysteineBy similarity	1
Modified residueⁱ	218	Cysteine methyl esterBy similarity	1
Lipidationⁱ	218	S-geranylgeranyl cysteineBy similarity	1

Post-translational modificationⁱ

Phosphorylated by CDK1 kinase during mitosis.2 Publications

Keywords - PTMⁱ

Lipoprotein, Methylation, Phosphoprotein, Prenylation

Proteomic databases

EPDⁱ	P20338
MaxQB - The MaxQuant DataBase More...MaxQBⁱ	P20338
PaxDbⁱ	P20338
PeptideAtlas More...PeptideAtlasⁱ	P20338
PRIDEⁱ	P20338
ProteomicsDBⁱ	53750

PTM databases

iPTMnetⁱ	P20338
PhosphoSitePlusⁱ	P20338

Expressionⁱ

Gene expression databases

Bgeeⁱ	ENSG00000168118 Expressed in 241 organ(s), highest expression level in vagina
CleanExⁱ	HS_RAB4A
ExpressionAtlasⁱ	P20338 baseline and differential
Genevisibleⁱ	P20338 HS

Interactionⁱ

Subunit structureⁱ

Interacts with SGSM1, SGSM2 and SGSM3 (By similarity). Interacts with RAB11FIP1, RABEP1, ZFYVE20 and RUFY1 (PubMed:10698684, PubMed:11786538, PubMed:11788822, PubMed:14617813, PubMed:15280022, PubMed:16034420). Interacts (membrane-bound form) with NDRG1; the interaction involves NDRG1 in vesicular recycling of E-cadherin (PubMed:17786215). Interacts (in GTP-bound form) with GRIPAP1 (via N-terminus) (PubMed:20098723). Interacts with RABEP1 and RBSN (PubMed:20098723). Does not interact with HPS4 (By similarity).By similarity9 Publications

Binary interactionsⁱ

With	Entry	#Exp.	IntAct
EXOC5	O00471	5	EBI-722284,EBI-949824
GDI1	P31150	3	EBI-722284,EBI-946999
GDI2	P50395	2	EBI-722284,EBI-1049143
GRIPAP1	Q4V328	3	EBI-722284,EBI-717919
VPS52	Q8N1B4	3	EBI-722284,EBI-2799833

GO - Molecular functionⁱ

ATPase binding Source: Ensembl
ionotropic glutamate receptor binding Source: Ensembl
syntaxin binding Source: Ensembl

View the complete GO annotation on QuickGO ...

Protein-protein interaction databases

BioGridⁱ	111805, 43 interactors
Database of interacting proteins More...DIPⁱ	DIP-372N
IntActⁱ	P20338, 21 interactors
Molecular INTeraction database More...MINTⁱ	P20338
STRINGⁱ	9606.ENSP00000355651

Structureⁱ

Secondary structure

Legend: HelixTurnBeta strandPDB Structure known for this area

Feature key	Position(s)	DescriptionActions	Length
Beta strandⁱ	11 – 21	Combined sources	11
Helixⁱ	26 – 35	Combined sources	10
Beta strandⁱ	46 – 57	Combined sources	12
Beta strandⁱ	60 – 69	Combined sources	10
Helixⁱ	73 – 75	Combined sources	3
Helixⁱ	76 – 80	Combined sources	5
Beta strandⁱ	87 – 94	Combined sources	8
Helixⁱ	98 – 102	Combined sources	5
Helixⁱ	104 – 114	Combined sources	11
Beta strandⁱ	120 – 126	Combined sources	7
Helixⁱ	128 – 133	Combined sources	6
Helixⁱ	138 – 147	Combined sources	10
Beta strandⁱ	151 – 154	Combined sources	4
Turnⁱ	157 – 159	Combined sources	3
Helixⁱ	163 – 179	Combined sources	17

Show more details

3D structure databases

ProteinModelPortalⁱ	P20338
SMRⁱ	P20338
ModBaseⁱ	Search...
MobiDBⁱ	Search...

Miscellaneous databases

EvolutionaryTraceⁱ	P20338

EvolutionaryTraceⁱ

P20338

Family & Domainsⁱ

Motif

Feature key	Position(s)	DescriptionActions	Graphical view	Length
Motifⁱ	42 – 50	Effector regionBy similarity		9

Sequence similaritiesⁱ

Belongs to the small GTPase superfamily. Rab family.Curated

Phylogenomic databases

eggNOGⁱ	KOG0086 Eukaryota ENOG410XQ9X LUCA
Ensembl GeneTree More...GeneTreeⁱ	ENSGT00760000118841
HOVERGENⁱ	HBG009351
InParanoidⁱ	P20338
KEGG Orthology (KO) More...KOⁱ	K07879
OMAⁱ	GTQECGC
Database of Orthologous Groups More...OrthoDBⁱ	EOG091G0QOB
PhylomeDBⁱ	P20338
TreeFamⁱ	TF300032

Family and domain databases

InterProⁱ	View protein in InterPro IPR027417 P-loop_NTPase IPR005225 Small_GTP-bd_dom IPR001806 Small_GTPase
Pfam protein domain database More...Pfamⁱ	View protein in Pfam PF00071 Ras, 1 hit
SUPFAMⁱ	SSF52540 SSF52540, 1 hit
TIGRFAMsⁱ	TIGR00231 small_GTP, 1 hit
PROSITEⁱ	View protein in PROSITE PS51419 RAB, 1 hit

Sequence (1+)ⁱ

Sequence statusⁱ: Complete.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show all Align All

P20338-1 [UniParc]FASTA Add to basket

« Hide

        10         20         30         40         50
MSQTAMSETY DFLFKFLVIG NAGTGKSCLL HQFIEKKFKD DSNHTIGVEF 
        60         70         80         90        100
GSKIINVGGK YVKLQIWDTA GQERFRSVTR SYYRGAAGAL LVYDITSRET 
       110        120        130        140        150
YNALTNWLTD ARMLASQNIV IILCGNKKDL DADREVTFLE ASRFAQENEL 
       160        170        180        190        200
MFLETSALTG ENVEEAFVQC ARKILNKIES GELDPERMGS GIQYGDAALR 
       210 
QLRSPRRAQA PNAQECGC

Length:218

Mass (Da):24,390

Last modified:March 6, 2013 - v3

Checksum:ⁱ983D65E1162741B0

GO

Computationally mapped potential isoform sequencesⁱ

There is 1 potential isoform mapped to this entry.BLAST Align Show all Add to basket

	Entry	Entry name		Protein names	Gene names	Length	Annotation

	A0A087WYT5	A0A087WYT5_HUMAN		Ras-related protein Rab-4A Ras-related protein Rab-4A	RAB4A	113	Annotation score:

Sequence cautionⁱ

The sequence AAA60244 differs from that shown. Reason: Frameshift at position 6.Curated

Experimental Info

Feature key	Position(s)	DescriptionActions	Graphical view	Length
Sequence conflictⁱ	162	N → D in AAA60244 (PubMed:2501306).Curated		1
Sequence conflictⁱ	208	A → T in AAA60244 (PubMed:2501306).Curated		1

Sequence databases

Select the link destinations: EMBLⁱ GenBankⁱ DDBJⁱ Links Updated	M28211 mRNA Translation: AAA60244.1 Frameshift. AY585832 mRNA Translation: AAT91347.1 AF498934 mRNA Translation: AAM21082.1 AK313807 mRNA Translation: BAG36543.1 AL162595 Genomic DNA No translation available. AL117350 Genomic DNA No translation available. CH471098 Genomic DNA Translation: EAW69890.1 BC002438 mRNA Translation: AAH02438.1 BC004309 mRNA Translation: AAH04309.1
The Consensus CDS (CCDS) project More...CCDSⁱ	CCDS31050.1
PIRⁱ	E34323
NCBI Reference Sequences More...RefSeqⁱ	NP_001258927.1, NM_001271998.1 NP_004569.2, NM_004578.3
UniGeneⁱ	Hs.296169

Genome annotation databases

Ensemblⁱ	ENST00000366690; ENSP00000355651; ENSG00000168118
GeneIDⁱ	5867
KEGGⁱ	hsa:5867
UCSC genome browser More...UCSCⁱ	uc001hth.5 human

Similar proteinsⁱ

100% Identity
90% Identity
50% Identity

Protein	Similar proteins		Species	Score	Length	Source
P20338	RAB4A, member RAS oncogene family, isoform CRA_b		HUMAN		218	UniRef100_P20338
RAB4A isoform 3		PANTR		218
Ras-related protein Rab-4A isoform 1		CALJA		218
Ras-related protein Rab-4A		MACMU		218
RAB4A isoform 3		PONAB		218
+14

Protein	Similar proteins		Species	Score	Length	Source
P20338	Ras-related protein Rab-4A		RAT		218	UniRef90_P20338
Ras-related protein Rab-4A		MOUSE		218
Ras-related protein Rab-4A		BOVIN		218
RAB4A, member RAS oncogene family, isoform CRA_b		HUMAN		218
RAB4A isoform 3		PANTR		218
+97

Protein	Similar proteins		Species	Score	Length	Source
P20338	Ras-related protein Rab-4A		RAT		218	UniRef50_P20338
Ras-related protein Rab-4A		BOVIN		218
Ras-related protein Rab-4A		MOUSE		218
Ras-related protein Rab-4B		DANRE		213
Ras-related protein Rab-4B	)	HUMAN		213
+384

Cross-referencesⁱ

Sequence databases

Select the link destinations: EMBLⁱ GenBankⁱ DDBJⁱ Links Updated	M28211 mRNA Translation: AAA60244.1 Frameshift. AY585832 mRNA Translation: AAT91347.1 AF498934 mRNA Translation: AAM21082.1 AK313807 mRNA Translation: BAG36543.1 AL162595 Genomic DNA No translation available. AL117350 Genomic DNA No translation available. CH471098 Genomic DNA Translation: EAW69890.1 BC002438 mRNA Translation: AAH02438.1 BC004309 mRNA Translation: AAH04309.1
CCDSⁱ	CCDS31050.1
PIRⁱ	E34323
RefSeqⁱ	NP_001258927.1, NM_001271998.1 NP_004569.2, NM_004578.3
UniGeneⁱ	Hs.296169

3D structure databases

Select the link destinations: Protein Data Bank Europe More...PDBeⁱ Protein Data Bank RCSB More...RCSB PDBⁱ Protein Data Bank Japan More...PDBjⁱ Links Updated	PDB entry	Method	Resolution (Å)	Chain	Positions	PDBsum
	1YU9	X-ray	2.07	A	7-177	[»]
	1Z0K	X-ray	1.92	A/C	7-177	[»]
	2BMD	X-ray	1.80	A	6-189	[»]
	2BME	X-ray	1.57	A/B/C/D	6-189	[»]
ProteinModelPortalⁱ	P20338
SMRⁱ	P20338
ModBaseⁱ	Search...
MobiDBⁱ	Search...

Protein-protein interaction databases

BioGridⁱ	111805, 43 interactors
DIPⁱ	DIP-372N
IntActⁱ	P20338, 21 interactors
MINTⁱ	P20338
STRINGⁱ	9606.ENSP00000355651

Protein family/group databases

MoonDBⁱ	P20338 Predicted

MoonDBⁱ

P20338 Predicted

PTM databases

iPTMnetⁱ	P20338
PhosphoSitePlusⁱ	P20338

Polymorphism and mutation databases

DMDMⁱ	460018296

DMDMⁱ

460018296

Proteomic databases

EPDⁱ	P20338
MaxQBⁱ	P20338
PaxDbⁱ	P20338
PeptideAtlasⁱ	P20338
PRIDEⁱ	P20338
ProteomicsDBⁱ	53750

Protocols and materials databases

The DNASU plasmid repository More...DNASUⁱ	5867
Structural Biology Knowledgebase	Search...

Genome annotation databases

Ensemblⁱ	ENST00000366690; ENSP00000355651; ENSG00000168118
GeneIDⁱ	5867
KEGGⁱ	hsa:5867
UCSCⁱ	uc001hth.5 human

Organism-specific databases

CTDⁱ	5867
DisGeNETⁱ	5867
EuPathDBⁱ	HostDB:ENSG00000168118.11
GeneCardsⁱ	RAB4A
HGNCⁱ	HGNC:9781 RAB4A
MIMⁱ	179511 gene
neXtProtⁱ	NX_P20338
OpenTargetsⁱ	ENSG00000168118
PharmGKBⁱ	PA34141
GenAtlas: human gene database More...GenAtlasⁱ	Search...

Phylogenomic databases

eggNOGⁱ	KOG0086 Eukaryota ENOG410XQ9X LUCA
GeneTreeⁱ	ENSGT00760000118841
HOVERGENⁱ	HBG009351
InParanoidⁱ	P20338
KOⁱ	K07879
OMAⁱ	GTQECGC
OrthoDBⁱ	EOG091G0QOB
PhylomeDBⁱ	P20338
TreeFamⁱ	TF300032

Enzyme and pathway databases

Reactomeⁱ	R-HSA-1445148 Translocation of SLC2A4 (GLUT4) to the plasma membrane R-HSA-1660499 Synthesis of PIPs at the plasma membrane R-HSA-8854214 TBC/RABGAPs R-HSA-8873719 RAB geranylgeranylation R-HSA-8875656 MET receptor recycling
SignaLinkⁱ	P20338
SIGNORⁱ	P20338

Miscellaneous databases

ChiTaRSⁱ	RAB4A human
EvolutionaryTraceⁱ	P20338
GeneWikiⁱ	RAB4A
GenomeRNAiⁱ	5867
Protein Ontology More...PROⁱ	PR:P20338
SOURCEⁱ	Search...

Gene expression databases

Bgeeⁱ	ENSG00000168118 Expressed in 241 organ(s), highest expression level in vagina
CleanExⁱ	HS_RAB4A
ExpressionAtlasⁱ	P20338 baseline and differential
Genevisibleⁱ	P20338 HS

Family and domain databases

InterProⁱ	View protein in InterPro IPR027417 P-loop_NTPase IPR005225 Small_GTP-bd_dom IPR001806 Small_GTPase
Pfamⁱ	View protein in Pfam PF00071 Ras, 1 hit
SUPFAMⁱ	SSF52540 SSF52540, 1 hit
TIGRFAMsⁱ	TIGR00231 small_GTP, 1 hit
PROSITEⁱ	View protein in PROSITE PS51419 RAB, 1 hit
ProtoNetⁱ	Search...

Entry informationⁱ

Entry nameⁱ	RAB4A_HUMAN
Accessionⁱ	P20338Primary (citable) accession number: P20338 Secondary accession number(s): Q5T7P7, Q9BQ44
Entry historyⁱ	Integrated into UniProtKB/Swiss-Prot:	February 1, 1991
	Last sequence update:	March 6, 2013
	Last modified:	November 7, 2018
	This is version 201 of the entry and version 3 of the sequence. See complete history.
Entry statusⁱ	Reviewed (UniProtKB/Swiss-Prot)
Annotation program	Chordata Protein Annotation Program
Disclaimer	Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousⁱ

Keywords - Technical termⁱ

3D-structure, Complete proteome, Reference proteome

Documents

SIMILARITY comments
Index of protein domains and families
Human chromosome 1
Human chromosome 1: entries, gene names and cross-references to MIM
MIM cross-references
Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
PDB cross-references
Index of Protein Data Bank (PDB) cross-references

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UniParc

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UniRef

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Supporting data

UniProtKB - P20338 (RAB4A_HUMAN)

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Ras-related protein Rab-4A

Select a section on the left to see content.

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Caution

Regions

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

Enzyme and pathway databases

Protein family/group databases

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

Organism-specific databases

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Endosome

Other locations

Cytosol

Endosome

Extracellular region or secreted

Plasma Membrane

Other locations

Keywords - Cellular componenti

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

Mutagenesis

Organism-specific databases

Polymorphism and mutation databases

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Amino acid modifications

Keywords - PTMi

Proteomic databases

PTM databases

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

GO - Molecular functioni

Protein-protein interaction databases

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

Secondary structure

3D structure databases

Miscellaneous databases

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Motif

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Phylogenomic databases

Family and domain databases

<p>This subsection of the ‘Sequence’ section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

Experimental Info

Sequence databases

Genome annotation databases

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

3D structure databases

Protein-protein interaction databases

Protein family/group databases

PTM databases

Polymorphism and mutation databases

Proteomic databases

Protocols and materials databases

Genome annotation databases

Organism-specific databases

Phylogenomic databases

Enzyme and pathway databases

Miscellaneous databases

Gene expression databases

Family and domain databases

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Documents

UniProt is an ELIXIR core data resource

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Functionⁱ

GO - Molecular functionⁱ

GO - Biological processⁱ

Names & Taxonomyⁱ

Subcellular locationⁱ

Keywords - Cellular componentⁱ

Pathology & Biotechⁱ

PTM / Processingⁱ

Keywords - PTMⁱ

Expressionⁱ

Interactionⁱ

GO - Molecular functionⁱ

Structureⁱ

Family & Domainsⁱ

Sequence similaritiesⁱ

Sequence cautionⁱ

Cross-referencesⁱ

Entry informationⁱ

Miscellaneousⁱ

Keywords - Technical termⁱ