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Protein

60S ribosomal protein L9

Gene

Rpl9

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • rRNA binding Source: InterPro
  • structural constituent of ribosome Source: GO_Central

GO - Biological processi

  • cellular response to nerve growth factor stimulus Source: RGD
  • cytoplasmic translation Source: GO_Central

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L9
Gene namesi
Name:Rpl9
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componentsi: Chromosome 1, Chromosome 14, Chromosome 3

Organism-specific databases

RGDi62049 Rpl9

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001311001 – 19260S ribosomal protein L9Add BLAST192

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei121N6-acetyllysineBy similarity1

Keywords - PTMi

Acetylation

Proteomic databases

PaxDbiP17077
PRIDEiP17077

PTM databases

iPTMnetiP17077
PhosphoSitePlusiP17077

Expressioni

Gene expression databases

BgeeiENSRNOG00000026716 Expressed in 9 organ(s), highest expression level in spleen
GenevisibleiP17077 RN

Interactioni

Protein-protein interaction databases

BioGridi247930, 1 interactor
IntActiP17077, 3 interactors
STRINGi10116.ENSRNOP00000041817

Structurei

3D structure databases

ProteinModelPortaliP17077
SMRiP17077
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG3255 Eukaryota
COG0097 LUCA
GeneTreeiENSGT00390000015224
HOGENOMiHOG000039905
HOVERGENiHBG000942
InParanoidiP17077
KOiK02940
OMAiVFQDGIY
OrthoDBiEOG091G0R6Z
PhylomeDBiP17077
TreeFamiTF300033

Family and domain databases

Gene3Di3.90.930.12, 2 hits
InterProiView protein in InterPro
IPR000702 Ribosomal_L6
IPR020040 Ribosomal_L6_a/b-dom
IPR036789 Ribosomal_L6_a/b-dom_sf
IPR002359 Ribosomal_L6_CS2
PANTHERiPTHR11655 PTHR11655, 1 hit
PfamiView protein in Pfam
PF00347 Ribosomal_L6, 2 hits
PIRSFiPIRSF002162 Ribosomal_L6, 1 hit
SUPFAMiSSF56053 SSF56053, 2 hits
PROSITEiView protein in PROSITE
PS00700 RIBOSOMAL_L6_2, 1 hit

Sequencei

Sequence statusi: Complete.

P17077-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MKTILSNQTV DIPENVDITL KGRTVIVKGP RGTLRRDFNH INVELSLLGK
60 70 80 90 100
KKKRLRVDKW WGNRKELATV RTICSHVQNM IKGVTLGFRY KMRSVYAHFP
110 120 130 140 150
INVVIQENGS LVEIRNFLGE KYIRRVRMRT GVACSVSQAQ KDELILEGND
160 170 180 190
IELVSNSAAL IQQATTVKNK DIRKFLDGIY VSEKGTVQQP DE
Length:192
Mass (Da):21,893
Last modified:August 1, 1990 - v1
Checksum:i024F3ABA12F77D30
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X51706 mRNA Translation: CAA36002.1
BC086561 mRNA Translation: AAH86561.1
PIRiJH0222 R5RT9
RefSeqiNP_001007599.3, NM_001007598.3
XP_002725578.1, XM_002725532.5
XP_002729193.1, XM_002729147.2
XP_003748822.1, XM_003748774.4
XP_003753735.1, XM_003753687.1
UniGeneiRn.107914
Rn.201359

Genome annotation databases

EnsembliENSRNOT00000038927; ENSRNOP00000032635; ENSRNOG00000026716
ENSRNOT00000042201; ENSRNOP00000041817; ENSRNOG00000030476
ENSRNOT00000052231; ENSRNOP00000069650; ENSRNOG00000028449
ENSRNOT00000076245; ENSRNOP00000068363; ENSRNOG00000026716
GeneIDi100360449
100364457
29257
KEGGirno:100360449
rno:100364457
rno:29257
UCSCiRGD:62049 rat

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X51706 mRNA Translation: CAA36002.1
BC086561 mRNA Translation: AAH86561.1
PIRiJH0222 R5RT9
RefSeqiNP_001007599.3, NM_001007598.3
XP_002725578.1, XM_002725532.5
XP_002729193.1, XM_002729147.2
XP_003748822.1, XM_003748774.4
XP_003753735.1, XM_003753687.1
UniGeneiRn.107914
Rn.201359

3D structure databases

ProteinModelPortaliP17077
SMRiP17077
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi247930, 1 interactor
IntActiP17077, 3 interactors
STRINGi10116.ENSRNOP00000041817

PTM databases

iPTMnetiP17077
PhosphoSitePlusiP17077

Proteomic databases

PaxDbiP17077
PRIDEiP17077

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000038927; ENSRNOP00000032635; ENSRNOG00000026716
ENSRNOT00000042201; ENSRNOP00000041817; ENSRNOG00000030476
ENSRNOT00000052231; ENSRNOP00000069650; ENSRNOG00000028449
ENSRNOT00000076245; ENSRNOP00000068363; ENSRNOG00000026716
GeneIDi100360449
100364457
29257
KEGGirno:100360449
rno:100364457
rno:29257
UCSCiRGD:62049 rat

Organism-specific databases

CTDi6133
RGDi62049 Rpl9

Phylogenomic databases

eggNOGiKOG3255 Eukaryota
COG0097 LUCA
GeneTreeiENSGT00390000015224
HOGENOMiHOG000039905
HOVERGENiHBG000942
InParanoidiP17077
KOiK02940
OMAiVFQDGIY
OrthoDBiEOG091G0R6Z
PhylomeDBiP17077
TreeFamiTF300033

Miscellaneous databases

PROiPR:P17077

Gene expression databases

BgeeiENSRNOG00000026716 Expressed in 9 organ(s), highest expression level in spleen
GenevisibleiP17077 RN

Family and domain databases

Gene3Di3.90.930.12, 2 hits
InterProiView protein in InterPro
IPR000702 Ribosomal_L6
IPR020040 Ribosomal_L6_a/b-dom
IPR036789 Ribosomal_L6_a/b-dom_sf
IPR002359 Ribosomal_L6_CS2
PANTHERiPTHR11655 PTHR11655, 1 hit
PfamiView protein in Pfam
PF00347 Ribosomal_L6, 2 hits
PIRSFiPIRSF002162 Ribosomal_L6, 1 hit
SUPFAMiSSF56053 SSF56053, 2 hits
PROSITEiView protein in PROSITE
PS00700 RIBOSOMAL_L6_2, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiRL9_RAT
AccessioniPrimary (citable) accession number: P17077
Entry historyiIntegrated into UniProtKB/Swiss-Prot: August 1, 1990
Last sequence update: August 1, 1990
Last modified: November 7, 2018
This is version 136 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
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Main funding by: National Institutes of Health

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