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Protein

HLA class I histocompatibility antigen, A-30 alpha chain

Gene

HLA-A

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Involved in the presentation of foreign antigens to the immune system.

GO - Molecular functioni

  • beta-2-microglobulin binding Source: UniProtKB
  • peptide antigen binding Source: UniProtKB
  • TAP binding Source: UniProtKB

GO - Biological processi

Keywordsi

Biological processImmunity

Enzyme and pathway databases

ReactomeiR-HSA-1236974 ER-Phagosome pathway
R-HSA-1236977 Endosomal/Vacuolar pathway
R-HSA-198933 Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell
R-HSA-877300 Interferon gamma signaling
R-HSA-909733 Interferon alpha/beta signaling
R-HSA-983170 Antigen Presentation: Folding, assembly and peptide loading of class I MHC

Names & Taxonomyi

Protein namesi
Recommended name:
HLA class I histocompatibility antigen, A-30 alpha chain
Alternative name(s):
MHC class I antigen A*30
Gene namesi
Name:HLA-A
Synonyms:HLAA
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 6

Organism-specific databases

EuPathDBiHostDB:ENSG00000206503.11
HGNCiHGNC:4931 HLA-A
MIMi142800 gene
neXtProtiNX_P16188

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini25 – 308ExtracellularSequence analysisAdd BLAST284
Transmembranei309 – 332HelicalSequence analysisAdd BLAST24
Topological domaini333 – 365CytoplasmicSequence analysisAdd BLAST33

Keywords - Cellular componenti

Membrane, MHC I

Pathology & Biotechi

Organism-specific databases

DisGeNETi3105
MalaCardsiHLA-A

Polymorphism and mutation databases

DMDMi1345596

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 24Add BLAST24
ChainiPRO_000001882225 – 365HLA class I histocompatibility antigen, A-30 alpha chainAdd BLAST341

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Glycosylationi110N-linked (GlcNAc...) asparagineBy similarity1
Disulfide bondi125 ↔ 188PROSITE-ProRule annotation
Disulfide bondi227 ↔ 283PROSITE-ProRule annotation
Modified residuei343PhosphoserineBy similarity1
Modified residuei344PhosphotyrosineBy similarity1
Modified residuei349PhosphoserineBy similarity1
Modified residuei350PhosphoserineBy similarity1
Modified residuei352PhosphoserineCombined sources1
Modified residuei356PhosphoserineCombined sources1
Modified residuei359PhosphoserineCombined sources1

Post-translational modificationi

Polyubiquitinated in a post ER compartment by interaction with human herpesvirus 8 MIR1 protein. This targets the protein for rapid degradation via the ubiquitin system (By similarity).By similarity

Keywords - PTMi

Disulfide bond, Glycoprotein, Phosphoprotein, Ubl conjugation

Proteomic databases

EPDiP16188
MaxQBiP16188
PeptideAtlasiP16188
PRIDEiP16188

PTM databases

iPTMnetiP16188
SwissPalmiP16188

Expressioni

Gene expression databases

BgeeiENSG00000206503
CleanExiHS_HLA-A
ExpressionAtlasiP16188 baseline and differential
GenevisibleiP16188 HS

Organism-specific databases

HPAiCAB078470

Interactioni

Subunit structurei

Heterodimer of an alpha chain and a beta chain (beta-2-microglobulin).By similarity

GO - Molecular functioni

  • beta-2-microglobulin binding Source: UniProtKB
  • TAP binding Source: UniProtKB

Protein-protein interaction databases

IntActiP16188, 3 interactors

Structurei

3D structure databases

ProteinModelPortaliP16188
SMRiP16188
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini209 – 295Ig-like C1-typeAdd BLAST87

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni25 – 114Alpha-1Add BLAST90
Regioni115 – 206Alpha-2Add BLAST92
Regioni207 – 298Alpha-3Add BLAST92
Regioni299 – 308Connecting peptide10

Sequence similaritiesi

Belongs to the MHC class I family.Curated

Keywords - Domaini

Signal, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG410II5V Eukaryota
ENOG4111K8F LUCA
HOVERGENiHBG016709
TreeFamiTF336617

Family and domain databases

Gene3Di2.60.40.10, 1 hit
3.30.500.10, 1 hit
InterProiView protein in InterPro
IPR007110 Ig-like_dom
IPR036179 Ig-like_dom_sf
IPR013783 Ig-like_fold
IPR003006 Ig/MHC_CS
IPR003597 Ig_C1-set
IPR011161 MHC_I-like_Ag-recog
IPR037055 MHC_I-like_Ag-recog_sf
IPR011162 MHC_I/II-like_Ag-recog
IPR001039 MHC_I_a_a1/a2
IPR010579 MHC_I_a_C
PfamiView protein in Pfam
PF07654 C1-set, 1 hit
PF00129 MHC_I, 1 hit
PF06623 MHC_I_C, 1 hit
PRINTSiPR01638 MHCCLASSI
SMARTiView protein in SMART
SM00407 IGc1, 1 hit
SUPFAMiSSF48726 SSF48726, 1 hit
SSF54452 SSF54452, 1 hit
PROSITEiView protein in PROSITE
PS50835 IG_LIKE, 1 hit
PS00290 IG_MHC, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P16188-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAVMAPRTLL LLLSGALALT HTWAGSHSMR YFSTSVSRPG SGEPRFIAVG
60 70 80 90 100
YVDDTQFVRF DSDAASQRME PRAPWIEQER PEYWDQETRN VKAQSQTDRV
110 120 130 140 150
DLGTLRGYYN QSEAGSHTIQ IMYGCDVGSD GRFLRGYEQH AYDGKDYIAL
160 170 180 190 200
NEDLRSWTAA DMAAQITQRK WEAARWAEQL RAYLEGTCVE WLRRYLENGK
210 220 230 240 250
ETLQRTDPPK THMTHHPISD HEATLRCWAL GFYPAEITLT WQRDGEDQTQ
260 270 280 290 300
DTELVETRPA GDGTFQKWAA VVVPSGEEQR YTCHVQHEGL PKPLTLRWEL
310 320 330 340 350
SSQPTIPIVG IIAGLVLLGA VITGAVVAAV MWRRKSSDRK GGSYTQAASS
360
DSAQGSDVSL TACKV
Length:365
Mass (Da):40,905
Last modified:February 1, 1996 - v2
Checksum:i521166D95FB1DC28
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti33S → F in AAA59612 (PubMed:2478623).Curated1

Polymorphismi

The following alleles of A-30 are known: A*30:01 (A30.3), A*30:02, A*30:03, A*30:04 (A30W7), A*30:06, A*30:07 and A*30:08. The sequence shown is that of A*30:01.

Natural variant

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Natural variantiVAR_00436621H → Q in allele A*30:02, allele A*30:04 and allele A*30:08. 1
Natural variantiVAR_01028433S → Y in allele A*30:08. 1
Natural variantiVAR_01665355T → A in allele A*30:06. 1
Natural variantiVAR_00436780R → G in allele A*30:03. Combined sources1
Natural variantiVAR_01673886Q → E in allele A*30:07. 1
Natural variantiVAR_01673989 – 90RN → GK in allele A*30:07. 2
Natural variantiVAR_05627189R → G. Corresponds to variant dbSNP:rs199474430Ensembl.1
Natural variantiVAR_00436894Q → H in allele A*30:02, allele A*30:03, allele A*30:04, allele A*30:06 and allele A*30:07. Corresponds to variant dbSNP:rs78306866Ensembl.1
Natural variantiVAR_004369100 – 101VD → EN in allele A*30:02, allele A*30:03, allele A*30:04, allele A*30:06 and allele A*30:07. 2
Natural variantiVAR_056272101D → N. Corresponds to variant dbSNP:rs1136688Ensembl.1
Natural variantiVAR_056273121I → M. Corresponds to variant dbSNP:rs1136695Ensembl.1
Natural variantiVAR_056274129S → P. Corresponds to variant dbSNP:rs1136700Ensembl.1
Natural variantiVAR_056275131G → W. Corresponds to variant dbSNP:rs1136702Ensembl.1
Natural variantiVAR_056276133F → L. Corresponds to variant dbSNP:rs1059488Ensembl.1
Natural variantiVAR_056277151N → K. Corresponds to variant dbSNP:rs1059509Ensembl.1
Natural variantiVAR_056278166I → T. Corresponds to variant dbSNP:rs1059516Ensembl.1
Natural variantiVAR_004370175 – 176RW → HV in allele A*30:04 and allele A*30:06. 2
Natural variantiVAR_004371176W → R in allele A*30:02, allele A*30:03 and allele A*30:07. 1
Natural variantiVAR_004372180L → W in allele A*30:04 and allele A*30:06. 1
Natural variantiVAR_056279205R → H. Corresponds to variant dbSNP:rs17185861Ensembl.1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M30576 Genomic DNA Translation: AAA59612.1
U07234 mRNA Translation: AAA70162.1
X61702 mRNA Translation: CAA43871.1
M93657 Genomic DNA Translation: AAA58650.1
Z34921 Genomic DNA Translation: CAA84401.1
AH005195 Genomic DNA Translation: AAB53658.1
U24261 mRNA Translation: AAB50434.1
X83770 Genomic DNA Translation: CAA58723.1
X83771 Genomic DNA Translation: CAA58724.1
AH006045 Genomic DNA Translation: AAC14191.1
AH006148 Genomic DNA Translation: AAC18600.1
AJ249308
, AJ249309, AJ249310, AJ249311, AJ249312, AJ249313, AJ249314, AJ249315 Genomic DNA Translation: CAB57306.1
PIRiI38519
I54307
I56039
UniGeneiHs.181244
Hs.713441

Genome annotation databases

EnsembliENST00000376809; ENSP00000366005; ENSG00000206503
ENST00000396634; ENSP00000379873; ENSG00000206503
UCSCiuc003nol.3 human

Keywords - Coding sequence diversityi

Polymorphism

Similar proteinsi

Entry informationi

Entry namei1A30_HUMAN
AccessioniPrimary (citable) accession number: P16188
Secondary accession number(s): O19598
, O62921, P30452, Q9UIP7
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 1, 1990
Last sequence update: February 1, 1996
Last modified: July 18, 2018
This is version 154 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 6
    Human chromosome 6: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  5. SIMILARITY comments
    Index of protein domains and families

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