UniProtKB - P15721 (PLY56_SOLLC)
Protein
Probable pectate lyase P56
Gene
LAT56
Organism
Solanum lycopersicum (Tomato) (Lycopersicon esculentum)
Status
Functioni
Might be needed during pollen development and tube growth.
Catalytic activityi
- Eliminative cleavage of (1->4)-alpha-D-galacturonan to give oligosaccharides with 4-deoxy-alpha-D-galact-4-enuronosyl groups at their non-reducing ends. EC:4.2.2.2
Cofactori
Ca2+By similarityNote: Binds 1 Ca2+ ion. Required for its activity.By similarity
: pectin degradation Pathwayi
This protein is involved in step 2 of the subpathway that synthesizes 2-dehydro-3-deoxy-D-gluconate from pectin.Proteins known to be involved in the 5 steps of the subpathway in this organism are:
- Pectinesterase, Pectinesterase (101261415), Pectinesterase, Pectinesterase (101244818), Pectinesterase 2.1 (PME2.1), Pectinesterase (101246061), Pectinesterase, Pectinesterase (PMEU1), Pectinesterase 2.2 (PME2.2), Pectinesterase, Pectinesterase (101248642), Pectinesterase (101258375), Pectinesterase (LePME1), Pectinesterase 3 (PME3), Pectinesterase, Pectinesterase, Pectinesterase, Pectinesterase 1 (PME1.9), Pectinesterase (101255775), Pectinesterase, Pectinesterase (101260091), Pectinesterase, Pectinesterase, Pectinesterase, Pectinesterase, Pectinesterase, Pectinesterase, Pectinesterase (101260282), Pectinesterase (101244677), Pectinesterase, Pectinesterase, Pectinesterase (101261269), Pectinesterase, Pectinesterase (101248083), Pectinesterase, Pectinesterase, Pectinesterase (101260787), Pectinesterase, Pectinesterase (101253120), Pectinesterase, Pectinesterase, Pectinesterase, Pectinesterase, Pectinesterase (101260795), Methionine aminopeptidase, Pectinesterase, Pectinesterase, Pectinesterase/pectinesterase inhibitor U1 (PMEU1), Pectinesterase (101268391), Pectinesterase (101247796), Pectinesterase (101260585), Pectinesterase (101260941), Pectinesterase (101247960), Pectinesterase, Pectinesterase, Pectinesterase, Pectinesterase, Pectinesterase, Pectinesterase (101266668), Pectinesterase, Pectinesterase (101262904), Pectinesterase (101261266), Pectinesterase, Pectinesterase (101268168), Pectinesterase (101244375), Pectinesterase, Pectinesterase, Pectinesterase (101261743), Pectinesterase (101257682), Pectinesterase, Pectinesterase (101245713), Pectinesterase (109119119), Pectinesterase, Pectinesterase (101264501), Pectinesterase, Pectinesterase (101266973), Pectinesterase, Pectinesterase, Pectinesterase, Pectinesterase
- Pectate lyase (778293), Probable pectate lyase P18 (9612), Pectate lyase, Pectate lyase (101257960), Pectate lyase, Pectate lyase, Pectate lyase (101257697), Pectate lyase (101246909), Probable pectate lyase P59 (LAT59), Probable pectate lyase P56 (LAT56), Pectate lyase, Pectate lyase (101260096), Pectate lyase, Pectate lyase (101250914), Pectate lyase (101249735), Pectate lyase (101264933), Pectate lyase (101263458), Pectate lyase, Pectate lyase (101252082), Pectate lyase (101254639), Pectate lyase, Pectate lyase, Pectate lyase (101253459), Pectate lyase (101260911)
- no protein annotated in this organism
- no protein annotated in this organism
- no protein annotated in this organism
View all proteins of this organism that are known to be involved in the subpathway that synthesizes 2-dehydro-3-deoxy-D-gluconate from pectin, the pathway pectin degradation and in Glycan metabolism.
Sites
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Metal bindingi | 192 | CalciumBy similarity | 1 | |
Metal bindingi | 217 | CalciumBy similarity | 1 | |
Metal bindingi | 221 | CalciumBy similarity | 1 | |
Active sitei | 273 | Sequence analysis | 1 |
GO - Molecular functioni
- metal ion binding Source: UniProtKB-KW
- pectate lyase activity Source: UniProtKB-EC
GO - Biological processi
- pectin catabolic process Source: UniProtKB-UniPathway
Keywordsi
Molecular function | Lyase |
Ligand | Calcium, Metal-binding |
Enzyme and pathway databases
UniPathwayi | UPA00545;UER00824 |
Protein family/group databases
CAZyi | PL1, Polysaccharide Lyase Family 1 |
Names & Taxonomyi
Protein namesi | |
Gene namesi | Name:LAT56 |
Organismi | Solanum lycopersicum (Tomato) (Lycopersicon esculentum) |
Taxonomic identifieri | 4081 [NCBI] |
Taxonomic lineagei | Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliopsida › eudicotyledons › Gunneridae › Pentapetalae › asterids › lamiids › Solanales › Solanaceae › Solanoideae › Solaneae › Solanum › Solanum subgen. Lycopersicon |
Proteomesi |
|
PTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Signal peptidei | 1 – 27 | Sequence analysisAdd BLAST | 27 | |
ChainiPRO_0000024890 | 28 – 398 | Probable pectate lyase P56Add BLAST | 371 |
Amino acid modifications
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Glycosylationi | 135 | N-linked (GlcNAc...) asparagineSequence analysis | 1 | |
Glycosylationi | 228 | N-linked (GlcNAc...) asparagineSequence analysis | 1 |
Keywords - PTMi
GlycoproteinProteomic databases
PaxDbi | P15721 |
PRIDEi | P15721 |
Expressioni
Tissue specificityi
Expressed in anthers and pollen.
Family & Domainsi
Sequence similaritiesi
Belongs to the polysaccharide lyase 1 family.Curated
Keywords - Domaini
SignalPhylogenomic databases
eggNOGi | ENOG502QQE2, Eukaryota |
HOGENOMi | CLU_026608_2_1_1 |
InParanoidi | P15721 |
OMAi | SRTMLEY |
OrthoDBi | 924221at2759 |
Family and domain databases
Gene3Di | 2.160.20.10, 1 hit |
InterProi | View protein in InterPro IPR018082, AmbAllergen IPR002022, Pec_lyase IPR012334, Pectin_lyas_fold IPR011050, Pectin_lyase_fold/virulence |
Pfami | View protein in Pfam PF00544, Pectate_lyase_4, 1 hit |
PRINTSi | PR00807, AMBALLERGEN |
SMARTi | View protein in SMART SM00656, Amb_all, 1 hit |
SUPFAMi | SSF51126, SSF51126, 1 hit |
i Sequence
Sequence statusi: Complete.
: The displayed sequence is further processed into a mature form. Sequence processingi
P15721-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MEYSYRTKIN VLFIVLILFV FAALGTAINA PRRKLTKKYR GPCMAVNSID
60 70 80 90 100
KCWRCDPFWA EDRQKMADCA LGFGINAMGG KYGPYYIVTD NSDDDVVDPK
110 120 130 140 150
PGTLRFGVIQ KGPLWITFAR SMRIRLTREL IVSSNKTIDG RGKYVHIANG
160 170 180 190 200
AGIKIQSASN VIISNLRIHN IVPTAGGLLR ESDDHLGLRG ADEGDAISIF
210 220 230 240 250
NSHDIWIDHI SMSRATDGLI DAVAGSTNIT ISNCHFTDHE KVMLFGANDH
260 270 280 290 300
AEEDRGMKIT LAYNHFGKRL DQRMPRCRFG FFHLVNNDYT HWERYAIGGS
310 320 330 340 350
SGATIISQGN RFIAEDKLLV KEVTYREKST SSVEEWMKWT WITDGDDFEN
360 370 380 390
GATFTPSGDQ NLLSKIDHLN LIQPEPSSKV GLLTKFSGAL SCKIRRPC
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | X15500 Genomic DNA Translation: CAA33524.1 |
PIRi | T07058 |
RefSeqi | NP_001296315.1, NM_001309386.1 |
Genome annotation databases
EnsemblPlantsi | Solyc03g058910.3.1; Solyc03g058910.3.1; Solyc03g058910.3 |
GeneIDi | 101253756 |
Gramenei | Solyc03g058910.3.1; Solyc03g058910.3.1; Solyc03g058910.3 |
KEGGi | sly:101253756 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | X15500 Genomic DNA Translation: CAA33524.1 |
PIRi | T07058 |
RefSeqi | NP_001296315.1, NM_001309386.1 |
3D structure databases
SMRi | P15721 |
ModBasei | Search... |
Protein-protein interaction databases
STRINGi | 4081.Solyc03g058910.2.1 |
Protein family/group databases
CAZyi | PL1, Polysaccharide Lyase Family 1 |
Proteomic databases
PaxDbi | P15721 |
PRIDEi | P15721 |
Genome annotation databases
EnsemblPlantsi | Solyc03g058910.3.1; Solyc03g058910.3.1; Solyc03g058910.3 |
GeneIDi | 101253756 |
Gramenei | Solyc03g058910.3.1; Solyc03g058910.3.1; Solyc03g058910.3 |
KEGGi | sly:101253756 |
Phylogenomic databases
eggNOGi | ENOG502QQE2, Eukaryota |
HOGENOMi | CLU_026608_2_1_1 |
InParanoidi | P15721 |
OMAi | SRTMLEY |
OrthoDBi | 924221at2759 |
Enzyme and pathway databases
UniPathwayi | UPA00545;UER00824 |
Family and domain databases
Gene3Di | 2.160.20.10, 1 hit |
InterProi | View protein in InterPro IPR018082, AmbAllergen IPR002022, Pec_lyase IPR012334, Pectin_lyas_fold IPR011050, Pectin_lyase_fold/virulence |
Pfami | View protein in Pfam PF00544, Pectate_lyase_4, 1 hit |
PRINTSi | PR00807, AMBALLERGEN |
SMARTi | View protein in SMART SM00656, Amb_all, 1 hit |
SUPFAMi | SSF51126, SSF51126, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | PLY56_SOLLC | |
Accessioni | P15721Primary (citable) accession number: P15721 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | April 1, 1990 |
Last sequence update: | February 1, 1996 | |
Last modified: | December 2, 2020 | |
This is version 116 of the entry and version 2 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Plant Protein Annotation Program |
Miscellaneousi
Keywords - Technical termi
Reference proteomeDocuments
- PATHWAY comments
Index of metabolic and biosynthesis pathways - SIMILARITY comments
Index of protein domains and families