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Protein

Nucleoside diphosphate kinase A

Gene

Nme1

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate. Possesses nucleoside-diphosphate kinase, serine/threonine-specific protein kinase, geranyl and farnesyl pyrophosphate kinase, histidine protein kinase and 3'-5' exonuclease activities. Involved in cell proliferation, differentiation and development, signal transduction, G protein-coupled receptor endocytosis, and gene expression. Required for neural development including neural patterning and cell fate determination. During GZMA-mediated cell death, works in concert with TREX1. NME1 nicks one strand of DNA and TREX1 removes bases from the free 3' end to enhance DNA damage and prevent DNA end reannealing and rapid repair (By similarity).By similarity

Catalytic activityi

ATP + nucleoside diphosphate = ADP + nucleoside triphosphate.

Cofactori

Mg2+By similarity

Activity regulationi

Autophosphorylation at His-118 increases serine/threonine protein kinase activity of the enzyme. Interaction with the SET complex inhibits exonuclease activity (By similarity).By similarity

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Binding sitei12ATPBy similarity1
Binding sitei60ATPBy similarity1
Binding sitei88ATPBy similarity1
Binding sitei94ATPBy similarity1
Binding sitei105ATPBy similarity1
Binding sitei115ATPBy similarity1
Active sitei118Pros-phosphohistidine intermediate1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionKinase, Transferase
Biological processDifferentiation, Endocytosis, Neurogenesis, Nucleotide metabolism
LigandATP-binding, Magnesium, Metal-binding, Nucleotide-binding

Enzyme and pathway databases

ReactomeiR-MMU-499943 Interconversion of nucleotide di- and triphosphates

Names & Taxonomyi

Protein namesi
Recommended name:
Nucleoside diphosphate kinase A (EC:2.7.4.6)
Short name:
NDK A
Short name:
NDP kinase A
Alternative name(s):
Metastasis inhibition factor NM23
NDPK-A
Tumor metastatic process-associated protein
nm23-M1
Gene namesi
Name:Nme1
Synonyms:Nm23
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 11

Organism-specific databases

MGIiMGI:97355 Nme1

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Cytoplasm, Nucleus

Pathology & Biotechi

Involvement in diseasei

This protein is found in reduced amount in tumor cells of high metastatic potential.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001371151 – 152Nucleoside diphosphate kinase AAdd BLAST152

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Cross-linki100Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)By similarity
Modified residuei120PhosphoserineBy similarity1
Modified residuei122PhosphoserineBy similarity1
Modified residuei124N6-acetyllysineCombined sources1
Modified residuei125PhosphoserineBy similarity1

Keywords - PTMi

Acetylation, Isopeptide bond, Phosphoprotein, Ubl conjugation

Proteomic databases

EPDiP15532
PaxDbiP15532
PeptideAtlasiP15532
PRIDEiP15532

2D gel databases

REPRODUCTION-2DPAGEiP15532
SWISS-2DPAGEiP15532

PTM databases

iPTMnetiP15532
PhosphoSitePlusiP15532
SwissPalmiP15532

Expressioni

Gene expression databases

BgeeiENSMUSG00000037601 Expressed in 123 organ(s), highest expression level in brain
ExpressionAtlasiP15532 baseline and differential
GenevisibleiP15532 MM

Interactioni

Subunit structurei

Hexamer of two different chains: A and B (A6, A5B, A4B2, A3B3, A2B4, AB5, B6). Interacts with PRUNE1. Component of the SET complex, composed of at least ANP32A, APEX1, HMGB2, NME1, SET and TREX1. Within this complex, interacts directly with SET. Also interacts with TREX1, but only following translocation to the nucleus.By similarity

GO - Molecular functioni

Protein-protein interaction databases

BioGridi201788, 4 interactors
DIPiDIP-34130N
IntActiP15532, 7 interactors
MINTiP15532
STRINGi10090.ENSMUSP00000117022

Structurei

3D structure databases

ProteinModelPortaliP15532
SMRiP15532
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the NDK family.Curated

Phylogenomic databases

eggNOGiKOG0888 Eukaryota
COG0105 LUCA
GeneTreeiENSGT00760000119146
HOGENOMiHOG000224564
HOVERGENiHBG000423
InParanoidiP15532
KOiK00940
OMAiKIVAMKM
OrthoDBiEOG091G0PLD
PhylomeDBiP15532
TreeFamiTF106373

Family and domain databases

Gene3Di3.30.70.141, 1 hit
HAMAPiMF_00451 NDP_kinase, 1 hit
InterProiView protein in InterPro
IPR034907 NDK-like_dom
IPR036850 NDK-like_dom_sf
IPR001564 Nucleoside_diP_kinase
IPR023005 Nucleoside_diP_kinase_AS
PfamiView protein in Pfam
PF00334 NDK, 1 hit
PRINTSiPR01243 NUCDPKINASE
SMARTiView protein in SMART
SM00562 NDK, 1 hit
SUPFAMiSSF54919 SSF54919, 1 hit
PROSITEiView protein in PROSITE
PS00469 NDP_KINASES, 1 hit

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 2 potential isoforms that are computationally mapped.Show allAlign All

P15532-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MANSERTFIA IKPDGVQRGL VGEIIKRFEQ KGFRLVGLKF LQASEDLLKE
60 70 80 90 100
HYTDLKDRPF FTGLVKYMHS GPVVAMVWEG LNVVKTGRVM LGETNPADSK
110 120 130 140 150
PGTIRGDFCI QVGRNIIHGS DSVKSAEKEI SLWFQPEELV EYKSCAQNWI

YE
Length:152
Mass (Da):17,208
Last modified:April 1, 1990 - v1
Checksum:iEE2E4DB218024686
GO

Computationally mapped potential isoform sequencesi

There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
Q5NC80Q5NC80_MOUSE
Nucleoside diphosphate kinase
Nme1
127Annotation score:
Q5NC79Q5NC79_MOUSE
Nucleoside diphosphate kinase A
Nme1
117Annotation score:

Sequence cautioni

The sequence AAA39826 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M35970 mRNA Translation: AAA39826.1 Different initiation.
M65037 mRNA Translation: AAA63391.1
U85511 mRNA Translation: AAB42080.1
AF033377 mRNA Translation: AAB87689.1
BC005629 mRNA Translation: AAH05629.1
CCDSiCCDS25247.1
PIRiA46557
RefSeqiNP_032730.1, NM_008704.2
UniGeneiMm.439702

Genome annotation databases

EnsembliENSMUST00000135884; ENSMUSP00000117022; ENSMUSG00000037601
GeneIDi18102
KEGGimmu:18102
UCSCiuc007kxu.1 mouse

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M35970 mRNA Translation: AAA39826.1 Different initiation.
M65037 mRNA Translation: AAA63391.1
U85511 mRNA Translation: AAB42080.1
AF033377 mRNA Translation: AAB87689.1
BC005629 mRNA Translation: AAH05629.1
CCDSiCCDS25247.1
PIRiA46557
RefSeqiNP_032730.1, NM_008704.2
UniGeneiMm.439702

3D structure databases

ProteinModelPortaliP15532
SMRiP15532
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi201788, 4 interactors
DIPiDIP-34130N
IntActiP15532, 7 interactors
MINTiP15532
STRINGi10090.ENSMUSP00000117022

PTM databases

iPTMnetiP15532
PhosphoSitePlusiP15532
SwissPalmiP15532

2D gel databases

REPRODUCTION-2DPAGEiP15532
SWISS-2DPAGEiP15532

Proteomic databases

EPDiP15532
PaxDbiP15532
PeptideAtlasiP15532
PRIDEiP15532

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000135884; ENSMUSP00000117022; ENSMUSG00000037601
GeneIDi18102
KEGGimmu:18102
UCSCiuc007kxu.1 mouse

Organism-specific databases

CTDi4830
MGIiMGI:97355 Nme1

Phylogenomic databases

eggNOGiKOG0888 Eukaryota
COG0105 LUCA
GeneTreeiENSGT00760000119146
HOGENOMiHOG000224564
HOVERGENiHBG000423
InParanoidiP15532
KOiK00940
OMAiKIVAMKM
OrthoDBiEOG091G0PLD
PhylomeDBiP15532
TreeFamiTF106373

Enzyme and pathway databases

ReactomeiR-MMU-499943 Interconversion of nucleotide di- and triphosphates

Miscellaneous databases

ChiTaRSiNme1 mouse
PROiPR:P15532
SOURCEiSearch...

Gene expression databases

BgeeiENSMUSG00000037601 Expressed in 123 organ(s), highest expression level in brain
ExpressionAtlasiP15532 baseline and differential
GenevisibleiP15532 MM

Family and domain databases

Gene3Di3.30.70.141, 1 hit
HAMAPiMF_00451 NDP_kinase, 1 hit
InterProiView protein in InterPro
IPR034907 NDK-like_dom
IPR036850 NDK-like_dom_sf
IPR001564 Nucleoside_diP_kinase
IPR023005 Nucleoside_diP_kinase_AS
PfamiView protein in Pfam
PF00334 NDK, 1 hit
PRINTSiPR01243 NUCDPKINASE
SMARTiView protein in SMART
SM00562 NDK, 1 hit
SUPFAMiSSF54919 SSF54919, 1 hit
PROSITEiView protein in PROSITE
PS00469 NDP_KINASES, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiNDKA_MOUSE
AccessioniPrimary (citable) accession number: P15532
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 1, 1990
Last sequence update: April 1, 1990
Last modified: November 7, 2018
This is version 176 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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