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Entry version 198 (12 Aug 2020)
Sequence version 2 (15 Dec 1998)
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Protein

Phytochrome A

Gene

PHYA

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. Photoconversion of Pr to Pfr induces an array of morphogenetic responses, whereas reconversion of Pfr to Pr cancels the induction of those responses. Pfr controls the expression of a number of nuclear genes including those encoding the small subunit of ribulose-bisphosphate carboxylase, chlorophyll A/B binding protein, protochlorophyllide reductase, rRNA, etc. It also controls the expression of its own gene(s) in a negative feedback fashion. Involved in the flowering time regulation. Can phosphorylate FHY1 and, possibly, FHL, in red light conditions; this inactivates their co-shuttling to the nucleus (PubMed:19208901). Regulates phototropic responses both in the nucleus (e.g. hypocotyl elongation and cotyledon opening under high-irradiance conditions and seed germination under very-low-fluence conditions) and in the cytoplasm (e.g. negative gravitropism in blue light and red-enhanced phototropism) (PubMed:17566111).6 Publications

Miscellaneous

PHYA association with FHY1 and FHY3 protect underphosphorylated PHYA from being recognized by the COP1/SPA complex.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section describes the interaction between a single amino acid and another chemical entity. Priority is given to the annotation of physiological ligands.<p><a href='/help/binding' target='_top'>More...</a></p>Binding sitei323Phytochromobilin chromophore (covalent; via 1 link)By similarity1

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionKinase, Photoreceptor protein, Receptor, Transferase
Biological processSensory transduction, Transcription, Transcription regulation
LigandChromophore

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Phytochrome A1 Publication
Alternative name(s):
Protein ELONGATED HYPOCOTYL 81 Publication
Protein FAR RED ELONGATED 1
Protein FAR RED ELONGATED HYPOCOTYL 2
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:PHYA1 Publication
Synonyms:FHY2, FRE1, HY81 Publication
Ordered Locus Names:At1g09570Imported
ORF Names:F14J9.23Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 1

Organism-specific databases

Arabidopsis Information Portal

More...
Araporti
AT1G09570

The Arabidopsis Information Resource

More...
TAIRi
locus:2012300, AT1G09570

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

Cytoplasm, Nucleus

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

<p>This subsection of the 'Pathology and Biotech' section describes the in vivo effects caused by ablation of the gene (or one or more transcripts) coding for the protein described in the entry. This includes gene knockout and knockdown, provided experiments have been performed in the context of a whole organism or a specific tissue, and not at the single-cell level.<p><a href='/help/disruption_phenotype' target='_top'>More...</a></p>Disruption phenotypei

Blind to far-red (FR). Impaired inhibition of hypocotyl elongation and cotyledons expansion under continuous FR light conditions.1 Publication

Mutagenesis

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/manual/pathology%5Fand%5Fbiotech%5Fsection">'Pathology and Biotech'</a> section describes the effect of the experimental mutation of one or more amino acid(s) on the biological properties of the protein.<p><a href='/help/mutagen' target='_top'>More...</a></p>Mutagenesisi30A → V in phyA-5; reduced binding to FHY1 and FHL leading to a reduced nuclear import under low fluences of far-red light (FR) light. Hyposensitivity to continuous low-intensity FR, and reduced very-low-fluence response and high-irradiance response. 1 Publication1
Mutagenesisi242Y → H: Constitutively active in the Pfr form, leading to a constitutively photomorphogenic (cop) phenotype and reduced accumulation in the nucleus. 1 Publication1
Mutagenesisi323C → A: Unable to bind the chromophore and cannot be converted to Pfr, fails to accumulate in the nucleus and to interact with FHY1. 1 Publication1
Mutagenesisi727G → E in HY8-3; no regulatory activity. 1 Publication1

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00001719621 – 1122Phytochrome AAdd BLAST1122

<p>This subsection of the <a href="http://www.uniprot.org/help/ptm%5Fprocessing%5Fsection">PTM/processing</a> section describes post-translational modifications (PTMs). This subsection <strong>complements</strong> the information provided at the sequence level or describes modifications for which <strong>position-specific data is not yet available</strong>.<p><a href='/help/post-translational_modification' target='_top'>More...</a></p>Post-translational modificationi

Phosphorylated.
Contains one covalently linked phytochromobilin chromophore.By similarity

Keywords - PTMi

Phosphoprotein

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
P14712

PRoteomics IDEntifications database

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PRIDEi
P14712

ProteomicsDB: a multi-organism proteome resource

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ProteomicsDBi
234753 [P14712-1]

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

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ExpressionAtlasi
P14712, baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

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Genevisiblei
P14712, AT

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction%5Fsection">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function%5Fsection">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Homodimer.

Interacts with NDPK2 and PKS4. Stabilized by interactions with PAPP5 and FYPP3 which are enhanced in the phosphorylated Pfr form.

Interacts with COP1/SPA1 complex (PubMed:12468726, PubMed:15465053, PubMed:15707897, PubMed:18390804, PubMed:18722184). Binds, via its photosensory domain, to PTAC12/HMR when photoactivated; this interaction stimulates its localization to photobodies (PubMed:22895253).

Interacts with FHY1, FHL and FHY3, especially upon far-red (FR) light illumination; when underphosphorylated (PubMed:18722184, PubMed:19208901, PubMed:21884939, PubMed:19482971). Forms PHYA/FHY1/HFR1 complex (PubMed:19482971).

9 Publications

<p>This subsection of the '<a href="http://www.uniprot.org/help/interaction%5Fsection">Interaction</a>' section provides information about binary protein-protein interactions. The data presented in this section are a quality-filtered subset of binary interactions automatically derived from the <a href="https://www.ebi.ac.uk/intact/">IntAct database</a>. It is updated at every <a href="http://www.uniprot.org/help/synchronization">UniProt release</a>.<p><a href='/help/binary_interactions' target='_top'>More...</a></p>Binary interactionsi

Hide details

GO - Molecular functioni

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGRID)

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BioGRIDi
22724, 25 interactors

Database of interacting proteins

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DIPi
DIP-33461N

Protein interaction database and analysis system

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IntActi
P14712, 12 interactors

Molecular INTeraction database

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MINTi
P14712

STRING: functional protein association networks

More...
STRINGi
3702.AT1G09570.1

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini218 – 402GAFSequence analysisAdd BLAST185
Domaini618 – 688PAS 1PROSITE-ProRule annotationAdd BLAST71
Domaini695 – 747PACPROSITE-ProRule annotationAdd BLAST53
Domaini748 – 822PAS 2PROSITE-ProRule annotationAdd BLAST75
Domaini902 – 1119Histidine kinasePROSITE-ProRule annotationAdd BLAST218

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the phytochrome family.Curated

Keywords - Domaini

Repeat

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

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eggNOGi
ENOG502QRSA, Eukaryota

InParanoid: Eukaryotic Ortholog Groups

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InParanoidi
P14712

KEGG Orthology (KO)

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KOi
K12120

Database for complete collections of gene phylogenies

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PhylomeDBi
P14712

Family and domain databases

Conserved Domains Database

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CDDi
cd00082, HisKA, 1 hit
cd00130, PAS, 2 hits

Gene3D Structural and Functional Annotation of Protein Families

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Gene3Di
3.30.450.270, 1 hit
3.30.450.40, 1 hit
3.30.565.10, 1 hit

Integrated resource of protein families, domains and functional sites

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InterProi
View protein in InterPro
IPR003018, GAF
IPR029016, GAF-like_dom_sf
IPR003594, HATPase_C
IPR036890, HATPase_C_sf
IPR005467, His_kinase_dom
IPR003661, HisK_dim/P
IPR000014, PAS
IPR035965, PAS-like_dom_sf
IPR013654, PAS_2
IPR013767, PAS_fold
IPR016132, Phyto_chromo_attachment
IPR013516, Phyto_chromo_BS
IPR001294, Phytochrome
IPR012129, Phytochrome_A-E
IPR013515, Phytochrome_cen-reg
IPR043150, Phytochrome_PHY

Pfam protein domain database

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Pfami
View protein in Pfam
PF01590, GAF, 1 hit
PF02518, HATPase_c, 1 hit
PF00989, PAS, 2 hits
PF08446, PAS_2, 1 hit
PF00360, PHY, 1 hit

PIRSF; a whole-protein classification database

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PIRSFi
PIRSF000084, Phytochrome, 1 hit

Protein Motif fingerprint database; a protein domain database

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PRINTSi
PR01033, PHYTOCHROME

Simple Modular Architecture Research Tool; a protein domain database

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SMARTi
View protein in SMART
SM00065, GAF, 1 hit
SM00387, HATPase_c, 1 hit
SM00388, HisKA, 1 hit
SM00091, PAS, 2 hits

Superfamily database of structural and functional annotation

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SUPFAMi
SSF55785, SSF55785, 3 hits
SSF55874, SSF55874, 1 hit

TIGRFAMs; a protein family database

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TIGRFAMsi
TIGR00229, sensory_box, 1 hit

PROSITE; a protein domain and family database

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PROSITEi
View protein in PROSITE
PS50109, HIS_KIN, 1 hit
PS50112, PAS, 2 hits
PS00245, PHYTOCHROME_1, 1 hit
PS50046, PHYTOCHROME_2, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequences (2+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry describes 2 <p>This subsection of the 'Sequence' section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform. This section is only present in reviewed entries, i.e. in UniProtKB/Swiss-Prot.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoformsi produced by alternative splicing. AlignAdd to basket

This entry has 2 described isoforms and 1 potential isoform that is computationally mapped.Show allAlign All

Isoform 1 (identifier: P14712-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the <div> <p><b>What is the canonical sequence?</b><p><a href='/help/canonical_and_isoforms' target='_top'>More...</a></p>canonicali sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MSGSRPTQSS EGSRRSRHSA RIIAQTTVDA KLHADFEESG SSFDYSTSVR
60 70 80 90 100
VTGPVVENQP PRSDKVTTTY LHHIQKGKLI QPFGCLLALD EKTFKVIAYS
110 120 130 140 150
ENASELLTMA SHAVPSVGEH PVLGIGTDIR SLFTAPSASA LQKALGFGDV
160 170 180 190 200
SLLNPILVHC RTSAKPFYAI IHRVTGSIII DFEPVKPYEV PMTAAGALQS
210 220 230 240 250
YKLAAKAITR LQSLPSGSME RLCDTMVQEV FELTGYDRVM AYKFHEDDHG
260 270 280 290 300
EVVSEVTKPG LEPYLGLHYP ATDIPQAARF LFMKNKVRMI VDCNAKHARV
310 320 330 340 350
LQDEKLSFDL TLCGSTLRAP HSCHLQYMAN MDSIASLVMA VVVNEEDGEG
360 370 380 390 400
DAPDATTQPQ KRKRLWGLVV CHNTTPRFVP FPLRYACEFL AQVFAIHVNK
410 420 430 440 450
EVELDNQMVE KNILRTQTLL CDMLMRDAPL GIVSQSPNIM DLVKCDGAAL
460 470 480 490 500
LYKDKIWKLG TTPSEFHLQE IASWLCEYHM DSTGLSTDSL HDAGFPRALS
510 520 530 540 550
LGDSVCGMAA VRISSKDMIF WFRSHTAGEV RWGGAKHDPD DRDDARRMHP
560 570 580 590 600
RSSFKAFLEV VKTRSLPWKD YEMDAIHSLQ LILRNAFKDS ETTDVNTKVI
610 620 630 640 650
YSKLNDLKID GIQELEAVTS EMVRLIETAT VPILAVDSDG LVNGWNTKIA
660 670 680 690 700
ELTGLSVDEA IGKHFLTLVE DSSVEIVKRM LENALEGTEE QNVQFEIKTH
710 720 730 740 750
LSRADAGPIS LVVNACASRD LHENVVGVCF VAHDLTGQKT VMDKFTRIEG
760 770 780 790 800
DYKAIIQNPN PLIPPIFGTD EFGWCTEWNP AMSKLTGLKR EEVIDKMLLG
810 820 830 840 850
EVFGTQKSCC RLKNQEAFVN LGIVLNNAVT SQDPEKVSFA FFTRGGKYVE
860 870 880 890 900
CLLCVSKKLD REGVVTGVFC FLQLASHELQ QALHVQRLAE RTAVKRLKAL
910 920 930 940 950
AYIKRQIRNP LSGIMFTRKM IEGTELGPEQ RRILQTSALC QKQLSKILDD
960 970 980 990 1000
SDLESIIEGC LDLEMKEFTL NEVLTASTSQ VMMKSNGKSV RITNETGEEV
1010 1020 1030 1040 1050
MSDTLYGDSI RLQQVLADFM LMAVNFTPSG GQLTVSASLR KDQLGRSVHL
1060 1070 1080 1090 1100
ANLEIRLTHT GAGIPEFLLN QMFGTEEDVS EEGLSLMVSR KLVKLMNGDV
1110 1120
QYLRQAGKSS FIITAELAAA NK
Length:1,122
Mass (Da):124,501
Last modified:December 15, 1998 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iD8B359713430744B
GO
Isoform 2 (identifier: P14712-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-108: Missing.

Show »
Length:1,014
Mass (Da):112,622
Checksum:i173404F60475F586
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A1P8AVD9A0A1P8AVD9_ARATH
Phytochrome
PHYA ELONGATED HYPOCOTYL 8, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, FHY2, FRE1
1,126Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti835E → D in CAA35221 (PubMed:2606345).Curated1
Sequence conflicti862E → K in CAA35221 (PubMed:2606345).Curated1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section describes the sequence of naturally occurring alternative protein isoform(s). The changes in the amino acid sequence may be due to alternative splicing, alternative promoter usage, alternative initiation, or ribosomal frameshifting.<p><a href='/help/var_seq' target='_top'>More...</a></p>Alternative sequenceiVSP_0363111 – 108Missing in isoform 2. CuratedAdd BLAST108

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
X17341 mRNA Translation: CAA35221.1
L21154 Genomic DNA Translation: AAA21351.1
AC003970 Genomic DNA Translation: AAC33219.1
CP002684 Genomic DNA Translation: AEE28462.1
CP002684 Genomic DNA Translation: AEE28463.1
CP002684 Genomic DNA Translation: ANM60635.1
CP002684 Genomic DNA Translation: ANM60636.1
CP002684 Genomic DNA Translation: ANM60637.1
AY039520 mRNA Translation: AAK62577.1

Protein sequence database of the Protein Information Resource

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PIRi
A33473, FKMUA
D86229

NCBI Reference Sequences

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RefSeqi
NP_001117256.1, NM_001123784.1 [P14712-2]
NP_001322907.1, NM_001331843.1 [P14712-1]
NP_001322908.1, NM_001331842.1 [P14712-1]
NP_001322909.1, NM_001331841.1 [P14712-1]
NP_172428.1, NM_100828.4 [P14712-1]

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT1G09570.1; AT1G09570.1; AT1G09570 [P14712-1]
AT1G09570.2; AT1G09570.2; AT1G09570 [P14712-2]
AT1G09570.4; AT1G09570.4; AT1G09570 [P14712-1]
AT1G09570.5; AT1G09570.5; AT1G09570 [P14712-1]
AT1G09570.6; AT1G09570.6; AT1G09570 [P14712-1]

Database of genes from NCBI RefSeq genomes

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GeneIDi
837483

Gramene; a comparative resource for plants

More...
Gramenei
AT1G09570.1; AT1G09570.1; AT1G09570 [P14712-1]
AT1G09570.2; AT1G09570.2; AT1G09570 [P14712-2]
AT1G09570.4; AT1G09570.4; AT1G09570 [P14712-1]
AT1G09570.5; AT1G09570.5; AT1G09570 [P14712-1]
AT1G09570.6; AT1G09570.6; AT1G09570 [P14712-1]

KEGG: Kyoto Encyclopedia of Genes and Genomes

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KEGGi
ath:AT1G09570

Keywords - Coding sequence diversityi

Alternative splicing

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X17341 mRNA Translation: CAA35221.1
L21154 Genomic DNA Translation: AAA21351.1
AC003970 Genomic DNA Translation: AAC33219.1
CP002684 Genomic DNA Translation: AEE28462.1
CP002684 Genomic DNA Translation: AEE28463.1
CP002684 Genomic DNA Translation: ANM60635.1
CP002684 Genomic DNA Translation: ANM60636.1
CP002684 Genomic DNA Translation: ANM60637.1
AY039520 mRNA Translation: AAK62577.1
PIRiA33473, FKMUA
D86229
RefSeqiNP_001117256.1, NM_001123784.1 [P14712-2]
NP_001322907.1, NM_001331843.1 [P14712-1]
NP_001322908.1, NM_001331842.1 [P14712-1]
NP_001322909.1, NM_001331841.1 [P14712-1]
NP_172428.1, NM_100828.4 [P14712-1]

3D structure databases

Database of comparative protein structure models

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ModBasei
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SWISS-MODEL Interactive Workspace

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SWISS-MODEL-Workspacei
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Protein-protein interaction databases

BioGRIDi22724, 25 interactors
DIPiDIP-33461N
IntActiP14712, 12 interactors
MINTiP14712
STRINGi3702.AT1G09570.1

Proteomic databases

PaxDbiP14712
PRIDEiP14712
ProteomicsDBi234753 [P14712-1]

Genome annotation databases

EnsemblPlantsiAT1G09570.1; AT1G09570.1; AT1G09570 [P14712-1]
AT1G09570.2; AT1G09570.2; AT1G09570 [P14712-2]
AT1G09570.4; AT1G09570.4; AT1G09570 [P14712-1]
AT1G09570.5; AT1G09570.5; AT1G09570 [P14712-1]
AT1G09570.6; AT1G09570.6; AT1G09570 [P14712-1]
GeneIDi837483
GrameneiAT1G09570.1; AT1G09570.1; AT1G09570 [P14712-1]
AT1G09570.2; AT1G09570.2; AT1G09570 [P14712-2]
AT1G09570.4; AT1G09570.4; AT1G09570 [P14712-1]
AT1G09570.5; AT1G09570.5; AT1G09570 [P14712-1]
AT1G09570.6; AT1G09570.6; AT1G09570 [P14712-1]
KEGGiath:AT1G09570

Organism-specific databases

AraportiAT1G09570
TAIRilocus:2012300, AT1G09570

Phylogenomic databases

eggNOGiENOG502QRSA, Eukaryota
InParanoidiP14712
KOiK12120
PhylomeDBiP14712

Miscellaneous databases

Protein Ontology

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PROi
PR:P14712

Gene expression databases

ExpressionAtlasiP14712, baseline and differential
GenevisibleiP14712, AT

Family and domain databases

CDDicd00082, HisKA, 1 hit
cd00130, PAS, 2 hits
Gene3Di3.30.450.270, 1 hit
3.30.450.40, 1 hit
3.30.565.10, 1 hit
InterProiView protein in InterPro
IPR003018, GAF
IPR029016, GAF-like_dom_sf
IPR003594, HATPase_C
IPR036890, HATPase_C_sf
IPR005467, His_kinase_dom
IPR003661, HisK_dim/P
IPR000014, PAS
IPR035965, PAS-like_dom_sf
IPR013654, PAS_2
IPR013767, PAS_fold
IPR016132, Phyto_chromo_attachment
IPR013516, Phyto_chromo_BS
IPR001294, Phytochrome
IPR012129, Phytochrome_A-E
IPR013515, Phytochrome_cen-reg
IPR043150, Phytochrome_PHY
PfamiView protein in Pfam
PF01590, GAF, 1 hit
PF02518, HATPase_c, 1 hit
PF00989, PAS, 2 hits
PF08446, PAS_2, 1 hit
PF00360, PHY, 1 hit
PIRSFiPIRSF000084, Phytochrome, 1 hit
PRINTSiPR01033, PHYTOCHROME
SMARTiView protein in SMART
SM00065, GAF, 1 hit
SM00387, HATPase_c, 1 hit
SM00388, HisKA, 1 hit
SM00091, PAS, 2 hits
SUPFAMiSSF55785, SSF55785, 3 hits
SSF55874, SSF55874, 1 hit
TIGRFAMsiTIGR00229, sensory_box, 1 hit
PROSITEiView protein in PROSITE
PS50109, HIS_KIN, 1 hit
PS50112, PAS, 2 hits
PS00245, PHYTOCHROME_1, 1 hit
PS50046, PHYTOCHROME_2, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

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ProtoNeti
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MobiDB: a database of protein disorder and mobility annotations

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MobiDBi
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<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiPHYA_ARATH
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: P14712
Secondary accession number(s): B3H6K9
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 1, 1990
Last sequence update: December 15, 1998
Last modified: August 12, 2020
This is version 198 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families
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