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Entry version 135 (08 May 2019)
Sequence version 3 (23 Jan 2007)
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Protein

50S ribosomal protein L32e

Gene

rpl32e

Organism
Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) (Halobacterium marismortui)
Status
Reviewed-Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Binds to the 23S rRNA.

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
50S ribosomal protein L32e
Alternative name(s):
Hl5
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:rpl32e
Ordered Locus Names:rrnAC1595
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiHaloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) (Halobacterium marismortui)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri272569 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiArchaeaEuryarchaeotaStenosarchaea groupHalobacteriaHalobacterialesHaloarculaceaeHaloarcula
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000001169 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome I

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

GO - Cellular componenti

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/ptm_processing_section">PTM / Processing</a> section indicates that the initiator methionine is cleaved from the mature protein.<p><a href='/help/init_met' target='_top'>More...</a></p>Initiator methionineiRemoved1 Publication
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00001311482 – 24150S ribosomal protein L32eAdd BLAST240

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction_section">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Part of the 50S ribosomal subunit. Interacts weakly with protein L15.2 Publications

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
272569.rrnAC1595

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

Secondary structure

1241
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details

3D structure databases

Database of protein disorder

More...
DisProti
DP00944

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
P12736

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

Miscellaneous databases

Relative evolutionary importance of amino acids within a protein sequence

More...
EvolutionaryTracei
P12736

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
arCOG00781 Archaea
COG0468 LUCA
COG1717 LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000038489

KEGG Orthology (KO)

More...
KOi
K02912

Identification of Orthologs from Complete Genome Data

More...
OMAi
EGKPQFN

Family and domain databases

Conserved Domains Database

More...
CDDi
cd00513 Ribosomal_L32_L32e, 1 hit

HAMAP database of protein families

More...
HAMAPi
MF_00810 Ribosomal_L32e, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR010995 DNA_repair_Rad51/TF_NusA_a-hlx
IPR003583 Hlx-hairpin-Hlx_DNA-bd_motif
IPR001515 Ribosomal_L32e
IPR023654 Ribosomal_L32e_arc
IPR018263 Ribosomal_L32e_CS
IPR036351 Ribosomal_L32e_sf

The PANTHER Classification System

More...
PANTHERi
PTHR23413 PTHR23413, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF01655 Ribosomal_L32e, 1 hit

ProDom; a protein domain database

More...
ProDomi
View protein in ProDom or Entries sharing at least one domain
PD003823 Ribosomal_L32e, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00278 HhH1, 2 hits
SM01393 Ribosomal_L32e, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF47794 SSF47794, 1 hit
SSF52042 SSF52042, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS00580 RIBOSOMAL_L32E, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is in its mature form or if it represents the precursor.<p><a href='/help/sequence_processing' target='_top'>More...</a></p>Sequence processingi: The displayed sequence is further processed into a mature form.

P12736-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MADNEEDVEA EEEYTELTDI SGVGPSKAES LREAGFESVE DVRGADQSAL
60 70 80 90 100
ADVSGIGNAL AARIKADVGG LEVESETEAE VEEEGGEEAP DEDVETELQA
110 120 130 140 150
RGLTEKTPDL SDEDARLLTQ RHRVGKPQFN RQDHHKKKRV STSWRKPRGQ
160 170 180 190 200
LSKQRRGIKG KGDTVEAGFR SPTAVRGKHP SGFEEVRVHN VDDLEGVDGD
210 220 230 240
TEAVRIASKV GARKRERIEE EAEDAGIRVL NPTYVEVEVS E
Length:241
Mass (Da):26,416
Last modified:January 23, 2007 - v3
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iF4FFF58DE34B3711
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti26S → R AA sequence (PubMed:3196689).Curated1
Sequence conflicti31Missing AA sequence (PubMed:3196689).Curated1
Sequence conflicti110 – 111LS → SL AA sequence (PubMed:3196689).Curated2

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
X58395 Genomic DNA Translation: CAA41288.1
AY596297 Genomic DNA Translation: AAV46513.1

Protein sequence database of the Protein Information Resource

More...
PIRi
S16539 R7HSH5

NCBI Reference Sequences

More...
RefSeqi
WP_011223739.1, NC_006396.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
AAV46513; AAV46513; rrnAC1595

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
3128514

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
hma:rrnAC1595

Pathosystems Resource Integration Center (PATRIC)

More...
PATRICi
fig|272569.17.peg.2284

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X58395 Genomic DNA Translation: CAA41288.1
AY596297 Genomic DNA Translation: AAV46513.1
PIRiS16539 R7HSH5
RefSeqiWP_011223739.1, NC_006396.1

3D structure databases

Select the link destinations:

Protein Data Bank Europe

More...
PDBei

Protein Data Bank RCSB

More...
RCSB PDBi

Protein Data Bank Japan

More...
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1FFKX-ray2.40V99-241[»]
1JJ2X-ray2.40X2-241[»]
1K73X-ray3.01Z2-241[»]
1K8AX-ray3.00Z2-241[»]
1K9MX-ray3.00Z2-241[»]
1KC8X-ray3.01Z2-241[»]
1KD1X-ray3.00Z2-241[»]
1KQSX-ray3.10X2-241[»]
1M1KX-ray3.20Z2-241[»]
1M90X-ray2.80Z2-241[»]
1N8RX-ray3.00Z2-241[»]
1NJIX-ray3.00Z2-241[»]
1Q7YX-ray3.20Z2-241[»]
1Q81X-ray2.95Z2-241[»]
1Q82X-ray2.98Z2-241[»]
1Q86X-ray3.00Z2-241[»]
1QVFX-ray3.10X2-241[»]
1QVGX-ray2.90X2-241[»]
1S72X-ray2.40Y1-241[»]
1VQ4X-ray2.70Y1-241[»]
1VQ5X-ray2.60Y1-241[»]
1VQ6X-ray2.70Y1-241[»]
1VQ7X-ray2.50Y1-241[»]
1VQ8X-ray2.20Y1-241[»]
1VQ9X-ray2.40Y1-241[»]
1VQKX-ray2.30Y1-241[»]
1VQLX-ray2.30Y1-241[»]
1VQMX-ray2.30Y1-241[»]
1VQNX-ray2.40Y1-241[»]
1VQOX-ray2.20Y1-241[»]
1VQPX-ray2.25Y1-241[»]
1W2BX-ray3.50X2-241[»]
1YHQX-ray2.40Y1-241[»]
1YI2X-ray2.65Y1-241[»]
1YIJX-ray2.60Y1-241[»]
1YITX-ray2.80Y1-241[»]
1YJ9X-ray2.90Y1-241[»]
1YJNX-ray3.00Y1-241[»]
1YJWX-ray2.90Y1-241[»]
2OTJX-ray2.90Y1-241[»]
2OTLX-ray2.70Y1-241[»]
2QA4X-ray3.00Y1-241[»]
2QEXX-ray2.90Y1-241[»]
3CC2X-ray2.40Y1-241[»]
3CC4X-ray2.70Y1-241[»]
3CC7X-ray2.70Y1-241[»]
3CCEX-ray2.75Y1-241[»]
3CCJX-ray2.70Y1-241[»]
3CCLX-ray2.90Y1-241[»]
3CCMX-ray2.55Y1-241[»]
3CCQX-ray2.90Y1-241[»]
3CCRX-ray3.00Y1-241[»]
3CCSX-ray2.95Y1-241[»]
3CCUX-ray2.80Y1-241[»]
3CCVX-ray2.90Y1-241[»]
3CD6X-ray2.75Y1-241[»]
3CMAX-ray2.80Y1-240[»]
3CMEX-ray2.95Y1-240[»]
3CPWX-ray2.70X1-241[»]
3CXCX-ray3.00X2-241[»]
3G4SX-ray3.20Y96-237[»]
3G6EX-ray2.70Y96-237[»]
3G71X-ray2.85Y96-237[»]
3I55X-ray3.11Y1-241[»]
3I56X-ray2.90Y1-241[»]
3OW2X-ray2.70X96-237[»]
4ADXelectron microscopy6.60Y1-241[»]
4V9FX-ray2.40Y1-241[»]
DisProtiDP00944
SMRiP12736
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi272569.rrnAC1595

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAV46513; AAV46513; rrnAC1595
GeneIDi3128514
KEGGihma:rrnAC1595
PATRICifig|272569.17.peg.2284

Phylogenomic databases

eggNOGiarCOG00781 Archaea
COG0468 LUCA
COG1717 LUCA
HOGENOMiHOG000038489
KOiK02912
OMAiEGKPQFN

Miscellaneous databases

EvolutionaryTraceiP12736

Family and domain databases

CDDicd00513 Ribosomal_L32_L32e, 1 hit
HAMAPiMF_00810 Ribosomal_L32e, 1 hit
InterProiView protein in InterPro
IPR010995 DNA_repair_Rad51/TF_NusA_a-hlx
IPR003583 Hlx-hairpin-Hlx_DNA-bd_motif
IPR001515 Ribosomal_L32e
IPR023654 Ribosomal_L32e_arc
IPR018263 Ribosomal_L32e_CS
IPR036351 Ribosomal_L32e_sf
PANTHERiPTHR23413 PTHR23413, 1 hit
PfamiView protein in Pfam
PF01655 Ribosomal_L32e, 1 hit
ProDomiView protein in ProDom or Entries sharing at least one domain
PD003823 Ribosomal_L32e, 1 hit
SMARTiView protein in SMART
SM00278 HhH1, 2 hits
SM01393 Ribosomal_L32e, 1 hit
SUPFAMiSSF47794 SSF47794, 1 hit
SSF52042 SSF52042, 1 hit
PROSITEiView protein in PROSITE
PS00580 RIBOSOMAL_L32E, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiRL32_HALMA
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: P12736
Secondary accession number(s): Q5V1T9
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 1, 1989
Last sequence update: January 23, 2007
Last modified: May 8, 2019
This is version 135 of the entry and version 3 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families
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