UniProtKB - P12732 (RL23_HALMA)
Protein
50S ribosomal protein L23
Gene
rpl23
Organism
Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) (Halobacterium marismortui)
Status
Functioni
Binds to a specific region on the 23S rRNA. Located at the polypeptide exit tunnel on the outside of the subunit.
GO - Molecular functioni
- rRNA binding Source: UniProtKB-UniRule
- structural constituent of ribosome Source: InterPro
GO - Biological processi
- translation Source: UniProtKB-UniRule
Keywordsi
Molecular function | Ribonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding |
Names & Taxonomyi
Protein namesi | Recommended name: 50S ribosomal protein L23UniRule annotationAlternative name(s): Hl25 Hmal23 L21 |
Gene namesi | Name:rpl23UniRule annotation Ordered Locus Names:rrnAC1609 |
Organismi | Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) (Halobacterium marismortui) |
Taxonomic identifieri | 272569 [NCBI] |
Taxonomic lineagei | Archaea › Euryarchaeota › Stenosarchaea group › Halobacteria › Halobacteriales › Haloarculaceae › Haloarcula › |
Proteomesi |
|
PTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Initiator methioninei | Removed2 Publications | |||
ChainiPRO_0000129435 | 2 – 85 | 50S ribosomal protein L23Add BLAST | 84 |
Interactioni
Subunit structurei
Part of the 50S ribosomal subunit.
Interacts with protein L29 and weakly with protein L39e.
UniRule annotation2 PublicationsProtein-protein interaction databases
STRINGi | 272569.rrnAC1609 |
Structurei
Secondary structure
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details3D structure databases
SMRi | P12732 |
ModBasei | Search... |
PDBe-KBi | Search... |
Miscellaneous databases
EvolutionaryTracei | P12732 |
Family & Domainsi
Sequence similaritiesi
Belongs to the universal ribosomal protein uL23 family.UniRule annotation
Phylogenomic databases
eggNOGi | arCOG04072, Archaea |
HOGENOMi | CLU_037562_4_2_2 |
OMAi | MDPYKVI |
Family and domain databases
Gene3Di | 3.30.70.330, 1 hit |
HAMAPi | MF_01369_A, Ribosomal_L23_A, 1 hit |
InterProi | View protein in InterPro IPR012677, Nucleotide-bd_a/b_plait_sf IPR019985, Ribosomal_L23 IPR012678, Ribosomal_L23/L15e_core_dom_sf IPR001014, Ribosomal_L23/L25_CS IPR013025, Ribosomal_L25/23 |
Pfami | View protein in Pfam PF00276, Ribosomal_L23, 1 hit |
SUPFAMi | SSF54189, SSF54189, 1 hit |
TIGRFAMsi | TIGR03636, uL23_arch, 1 hit |
PROSITEi | View protein in PROSITE PS00050, RIBOSOMAL_L23, 1 hit |
i Sequence
Sequence statusi: Complete.
: The displayed sequence is further processed into a mature form. Sequence processingi
P12732-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MSWDVIKHPH VTEKAMNDMD FQNKLQFAVD DRASKGEVAD AVEEQYDVTV
60 70 80
EQVNTQNTMD GEKKAVVRLS EDDDAQEVAS RIGVF
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | J05222 Genomic DNA Translation: AAA86861.1 AY596297 Genomic DNA Translation: AAV46526.1 |
PIRi | E35063, R5HS23 |
RefSeqi | WP_004591553.1, NZ_CP039138.1 |
Genome annotation databases
EnsemblBacteriai | AAV46526; AAV46526; rrnAC1609 |
GeneIDi | 40152575 |
KEGGi | hma:rrnAC1609 |
PATRICi | fig|272569.17.peg.2299 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | J05222 Genomic DNA Translation: AAA86861.1 AY596297 Genomic DNA Translation: AAV46526.1 |
PIRi | E35063, R5HS23 |
RefSeqi | WP_004591553.1, NZ_CP039138.1 |
3D structure databases
Select the link destinations: PDBei RCSB PDBi PDBji Links Updated | PDB entry | Method | Resolution (Å) | Chain | Positions | PDBsum |
1FFK | X-ray | 2.40 | P | 2-85 | [»] | |
1JJ2 | X-ray | 2.40 | R | 2-85 | [»] | |
1K73 | X-ray | 3.01 | T | 2-85 | [»] | |
1K8A | X-ray | 3.00 | T | 2-85 | [»] | |
1K9M | X-ray | 3.00 | T | 2-85 | [»] | |
1KC8 | X-ray | 3.01 | T | 2-85 | [»] | |
1KD1 | X-ray | 3.00 | T | 2-85 | [»] | |
1KQS | X-ray | 3.10 | R | 2-85 | [»] | |
1M1K | X-ray | 3.20 | T | 2-85 | [»] | |
1M90 | X-ray | 2.80 | T | 2-85 | [»] | |
1ML5 | electron microscopy | 14.00 | t | 2-85 | [»] | |
1N8R | X-ray | 3.00 | T | 2-85 | [»] | |
1NJI | X-ray | 3.00 | T | 2-85 | [»] | |
1Q7Y | X-ray | 3.20 | T | 2-85 | [»] | |
1Q81 | X-ray | 2.95 | T | 2-85 | [»] | |
1Q82 | X-ray | 2.98 | T | 2-85 | [»] | |
1Q86 | X-ray | 3.00 | T | 2-85 | [»] | |
1QVF | X-ray | 3.10 | R | 2-85 | [»] | |
1QVG | X-ray | 2.90 | R | 2-85 | [»] | |
1S72 | X-ray | 2.40 | S | 1-85 | [»] | |
1VQ4 | X-ray | 2.70 | S | 1-85 | [»] | |
1VQ5 | X-ray | 2.60 | S | 1-85 | [»] | |
1VQ6 | X-ray | 2.70 | S | 1-85 | [»] | |
1VQ7 | X-ray | 2.50 | S | 1-85 | [»] | |
1VQ8 | X-ray | 2.20 | S | 1-85 | [»] | |
1VQ9 | X-ray | 2.40 | S | 1-85 | [»] | |
1VQK | X-ray | 2.30 | S | 1-85 | [»] | |
1VQL | X-ray | 2.30 | S | 1-85 | [»] | |
1VQM | X-ray | 2.30 | S | 1-85 | [»] | |
1VQN | X-ray | 2.40 | S | 1-85 | [»] | |
1VQO | X-ray | 2.20 | S | 1-85 | [»] | |
1VQP | X-ray | 2.25 | S | 1-85 | [»] | |
1W2B | X-ray | 3.50 | R | 2-85 | [»] | |
1YHQ | X-ray | 2.40 | S | 1-85 | [»] | |
1YI2 | X-ray | 2.65 | S | 1-85 | [»] | |
1YIJ | X-ray | 2.60 | S | 1-85 | [»] | |
1YIT | X-ray | 2.80 | S | 1-85 | [»] | |
1YJ9 | X-ray | 2.90 | S | 1-85 | [»] | |
1YJN | X-ray | 3.00 | S | 1-85 | [»] | |
1YJW | X-ray | 2.90 | S | 1-85 | [»] | |
2OTJ | X-ray | 2.90 | S | 1-85 | [»] | |
2OTL | X-ray | 2.70 | S | 1-85 | [»] | |
2QA4 | X-ray | 3.00 | S | 1-85 | [»] | |
2QEX | X-ray | 2.90 | S | 1-85 | [»] | |
3CC2 | X-ray | 2.40 | S | 1-85 | [»] | |
3CC4 | X-ray | 2.70 | S | 1-85 | [»] | |
3CC7 | X-ray | 2.70 | S | 1-85 | [»] | |
3CCE | X-ray | 2.75 | S | 1-85 | [»] | |
3CCJ | X-ray | 2.70 | S | 1-85 | [»] | |
3CCL | X-ray | 2.90 | S | 1-85 | [»] | |
3CCM | X-ray | 2.55 | S | 1-85 | [»] | |
3CCQ | X-ray | 2.90 | S | 1-85 | [»] | |
3CCR | X-ray | 3.00 | S | 1-85 | [»] | |
3CCS | X-ray | 2.95 | S | 1-85 | [»] | |
3CCU | X-ray | 2.80 | S | 1-85 | [»] | |
3CCV | X-ray | 2.90 | S | 1-85 | [»] | |
3CD6 | X-ray | 2.75 | S | 1-85 | [»] | |
3CMA | X-ray | 2.80 | S | 1-85 | [»] | |
3CME | X-ray | 2.95 | S | 1-85 | [»] | |
3CPW | X-ray | 2.70 | R | 1-85 | [»] | |
3CXC | X-ray | 3.00 | R | 2-85 | [»] | |
3G4S | X-ray | 3.20 | S | 2-82 | [»] | |
3G6E | X-ray | 2.70 | S | 2-82 | [»] | |
3G71 | X-ray | 2.85 | S | 2-82 | [»] | |
3I55 | X-ray | 3.11 | S | 1-85 | [»] | |
3I56 | X-ray | 2.90 | S | 1-85 | [»] | |
3OW2 | X-ray | 2.70 | R | 2-82 | [»] | |
4ADX | electron microscopy | 6.60 | S | 1-85 | [»] | |
4V42 | X-ray | 5.50 | BT | 2-85 | [»] | |
4V4R | X-ray | 5.90 | BX | 2-85 | [»] | |
4V4S | X-ray | 6.76 | X | 2-85 | [»] | |
4V4T | X-ray | 6.46 | X | 2-85 | [»] | |
4V9F | X-ray | 2.40 | S | 1-85 | [»] | |
SMRi | P12732 | |||||
ModBasei | Search... | |||||
PDBe-KBi | Search... |
Protein-protein interaction databases
STRINGi | 272569.rrnAC1609 |
Genome annotation databases
EnsemblBacteriai | AAV46526; AAV46526; rrnAC1609 |
GeneIDi | 40152575 |
KEGGi | hma:rrnAC1609 |
PATRICi | fig|272569.17.peg.2299 |
Phylogenomic databases
eggNOGi | arCOG04072, Archaea |
HOGENOMi | CLU_037562_4_2_2 |
OMAi | MDPYKVI |
Miscellaneous databases
EvolutionaryTracei | P12732 |
Family and domain databases
Gene3Di | 3.30.70.330, 1 hit |
HAMAPi | MF_01369_A, Ribosomal_L23_A, 1 hit |
InterProi | View protein in InterPro IPR012677, Nucleotide-bd_a/b_plait_sf IPR019985, Ribosomal_L23 IPR012678, Ribosomal_L23/L15e_core_dom_sf IPR001014, Ribosomal_L23/L25_CS IPR013025, Ribosomal_L25/23 |
Pfami | View protein in Pfam PF00276, Ribosomal_L23, 1 hit |
SUPFAMi | SSF54189, SSF54189, 1 hit |
TIGRFAMsi | TIGR03636, uL23_arch, 1 hit |
PROSITEi | View protein in PROSITE PS00050, RIBOSOMAL_L23, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | RL23_HALMA | |
Accessioni | P12732Primary (citable) accession number: P12732 Secondary accession number(s): Q5V1S6 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | October 1, 1989 |
Last sequence update: | January 23, 2007 | |
Last modified: | April 7, 2021 | |
This is version 150 of the entry and version 2 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Prokaryotic Protein Annotation Program |
Miscellaneousi
Keywords - Technical termi
3D-structure, Direct protein sequencing, Reference proteomeDocuments
- Ribosomal proteins
Ribosomal proteins families and list of entries - PDB cross-references
Index of Protein Data Bank (PDB) cross-references - SIMILARITY comments
Index of protein domains and families