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Protein

50S ribosomal protein L23

Gene

rpl23

Organism
Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) (Halobacterium marismortui)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Binds to a specific region on the 23S rRNA. Located at the polypeptide exit tunnel on the outside of the subunit.

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L23UniRule annotation
Alternative name(s):
Hl25
Hmal23
L21
Gene namesi
Name:rpl23UniRule annotation
Ordered Locus Names:rrnAC1609
OrganismiHaloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) (Halobacterium marismortui)
Taxonomic identifieri272569 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaStenosarchaea groupHalobacteriaHalobacterialesHaloarculaceaeHaloarcula
Proteomesi
  • UP000001169 Componenti: Chromosome I

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved2 Publications
ChainiPRO_00001294352 – 8550S ribosomal protein L23Add BLAST84

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit. Interacts with protein L29 and weakly with protein L39e.UniRule annotation2 Publications

Protein-protein interaction databases

STRINGi272569.rrnAC1609

Structurei

Secondary structure

185
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details

3D structure databases

ProteinModelPortaliP12732
SMRiP12732
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP12732

Family & Domainsi

Sequence similaritiesi

Belongs to the universal ribosomal protein uL23 family.UniRule annotation

Phylogenomic databases

eggNOGiarCOG04072 Archaea
COG0089 LUCA
HOGENOMiHOG000231364
KOiK02892
OMAiMDPYKVI
OrthoDBiPOG093Z0KQ0

Family and domain databases

Gene3Di3.30.70.330, 1 hit
HAMAPiMF_01369_A Ribosomal_L23_A, 1 hit
InterProiView protein in InterPro
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR019985 Ribosomal_L23
IPR012678 Ribosomal_L23/L15e_core_dom_sf
IPR001014 Ribosomal_L23/L25_CS
IPR013025 Ribosomal_L25/23
PfamiView protein in Pfam
PF00276 Ribosomal_L23, 1 hit
SUPFAMiSSF54189 SSF54189, 1 hit
TIGRFAMsiTIGR03636 uL23_arch, 1 hit
PROSITEiView protein in PROSITE
PS00050 RIBOSOMAL_L23, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P12732-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSWDVIKHPH VTEKAMNDMD FQNKLQFAVD DRASKGEVAD AVEEQYDVTV
60 70 80
EQVNTQNTMD GEKKAVVRLS EDDDAQEVAS RIGVF
Length:85
Mass (Da):9,602
Last modified:January 23, 2007 - v2
Checksum:i2A2E869D640D5B60
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
J05222 Genomic DNA Translation: AAA86861.1
AY596297 Genomic DNA Translation: AAV46526.1
PIRiE35063 R5HS23
RefSeqiWP_004591553.1, NC_006396.1

Genome annotation databases

EnsemblBacteriaiAAV46526; AAV46526; rrnAC1609
GeneIDi35220742
KEGGihma:rrnAC1609
PATRICifig|272569.17.peg.2299

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
J05222 Genomic DNA Translation: AAA86861.1
AY596297 Genomic DNA Translation: AAV46526.1
PIRiE35063 R5HS23
RefSeqiWP_004591553.1, NC_006396.1

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1FFKX-ray2.40P2-85[»]
1JJ2X-ray2.40R2-85[»]
1K73X-ray3.01T2-85[»]
1K8AX-ray3.00T2-85[»]
1K9MX-ray3.00T2-85[»]
1KC8X-ray3.01T2-85[»]
1KD1X-ray3.00T2-85[»]
1KQSX-ray3.10R2-85[»]
1M1KX-ray3.20T2-85[»]
1M90X-ray2.80T2-85[»]
1N8RX-ray3.00T2-85[»]
1NJIX-ray3.00T2-85[»]
1Q7YX-ray3.20T2-85[»]
1Q81X-ray2.95T2-85[»]
1Q82X-ray2.98T2-85[»]
1Q86X-ray3.00T2-85[»]
1QVFX-ray3.10R2-85[»]
1QVGX-ray2.90R2-85[»]
1S72X-ray2.40S1-85[»]
1VQ4X-ray2.70S1-85[»]
1VQ5X-ray2.60S1-85[»]
1VQ6X-ray2.70S1-85[»]
1VQ7X-ray2.50S1-85[»]
1VQ8X-ray2.20S1-85[»]
1VQ9X-ray2.40S1-85[»]
1VQKX-ray2.30S1-85[»]
1VQLX-ray2.30S1-85[»]
1VQMX-ray2.30S1-85[»]
1VQNX-ray2.40S1-85[»]
1VQOX-ray2.20S1-85[»]
1VQPX-ray2.25S1-85[»]
1W2BX-ray3.50R2-85[»]
1YHQX-ray2.40S1-85[»]
1YI2X-ray2.65S1-85[»]
1YIJX-ray2.60S1-85[»]
1YITX-ray2.80S1-85[»]
1YJ9X-ray2.90S1-85[»]
1YJNX-ray3.00S1-85[»]
1YJWX-ray2.90S1-85[»]
2OTJX-ray2.90S1-85[»]
2OTLX-ray2.70S1-85[»]
2QA4X-ray3.00S1-85[»]
2QEXX-ray2.90S1-85[»]
3CC2X-ray2.40S1-85[»]
3CC4X-ray2.70S1-85[»]
3CC7X-ray2.70S1-85[»]
3CCEX-ray2.75S1-85[»]
3CCJX-ray2.70S1-85[»]
3CCLX-ray2.90S1-85[»]
3CCMX-ray2.55S1-85[»]
3CCQX-ray2.90S1-85[»]
3CCRX-ray3.00S1-85[»]
3CCSX-ray2.95S1-85[»]
3CCUX-ray2.80S1-85[»]
3CCVX-ray2.90S1-85[»]
3CD6X-ray2.75S1-85[»]
3CMAX-ray2.80S1-85[»]
3CMEX-ray2.95S1-85[»]
3CPWX-ray2.70R1-85[»]
3CXCX-ray3.00R2-85[»]
3G4SX-ray3.20S2-82[»]
3G6EX-ray2.70S2-82[»]
3G71X-ray2.85S2-82[»]
3I55X-ray3.11S1-85[»]
3I56X-ray2.90S1-85[»]
3OW2X-ray2.70R2-82[»]
4ADXelectron microscopy6.60S1-85[»]
4V4SX-ray6.76X2-85[»]
4V4TX-ray6.46X2-85[»]
4V9FX-ray2.40S1-85[»]
ProteinModelPortaliP12732
SMRiP12732
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi272569.rrnAC1609

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAV46526; AAV46526; rrnAC1609
GeneIDi35220742
KEGGihma:rrnAC1609
PATRICifig|272569.17.peg.2299

Phylogenomic databases

eggNOGiarCOG04072 Archaea
COG0089 LUCA
HOGENOMiHOG000231364
KOiK02892
OMAiMDPYKVI
OrthoDBiPOG093Z0KQ0

Miscellaneous databases

EvolutionaryTraceiP12732

Family and domain databases

Gene3Di3.30.70.330, 1 hit
HAMAPiMF_01369_A Ribosomal_L23_A, 1 hit
InterProiView protein in InterPro
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR019985 Ribosomal_L23
IPR012678 Ribosomal_L23/L15e_core_dom_sf
IPR001014 Ribosomal_L23/L25_CS
IPR013025 Ribosomal_L25/23
PfamiView protein in Pfam
PF00276 Ribosomal_L23, 1 hit
SUPFAMiSSF54189 SSF54189, 1 hit
TIGRFAMsiTIGR03636 uL23_arch, 1 hit
PROSITEiView protein in PROSITE
PS00050 RIBOSOMAL_L23, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiRL23_HALMA
AccessioniPrimary (citable) accession number: P12732
Secondary accession number(s): Q5V1S6
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 1, 1989
Last sequence update: January 23, 2007
Last modified: October 10, 2018
This is version 138 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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