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Protein

Nodulation protein D 1

Gene

nodD1

Organism
Bradyrhizobium japonicum
Status
Reviewed-Annotation score: -Protein predictedi

Functioni

NodD regulates the expression of the nodABCFE genes which encode other nodulation proteins. NodD is also a negative regulator of its own expression. Binds flavonoids as inducers.

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi23 – 42H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionActivator, DNA-binding, Repressor
Biological processNodulation, Transcription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Nodulation protein D 1
Gene namesi
Name:nodD1
Encoded oniPlasmid sym0 Publication
OrganismiBradyrhizobium japonicum
Taxonomic identifieri375 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeBradyrhizobium

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001057041 – 321Nodulation protein D 1Add BLAST321

Structurei

3D structure databases

ProteinModelPortaliP12232
SMRiP12232
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini6 – 63HTH lysR-typePROSITE-ProRule annotationAdd BLAST58

Family and domain databases

CDDicd08462 PBP2_NodD, 1 hit
Gene3Di1.10.10.10, 1 hit
InterProiView protein in InterPro
IPR005119 LysR_subst-bd
IPR037416 NodD_PBP2
IPR000847 Tscrpt_reg_HTH_LysR
IPR036388 WH-like_DNA-bd_sf
IPR036390 WH_DNA-bd_sf
PfamiView protein in Pfam
PF00126 HTH_1, 1 hit
PF03466 LysR_substrate, 1 hit
PRINTSiPR00039 HTHLYSR
SUPFAMiSSF46785 SSF46785, 1 hit
PROSITEiView protein in PROSITE
PS50931 HTH_LYSR, 1 hit

Sequencei

Sequence statusi: Complete.

P12232-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MRFKGLDLNL LVALDALMTE RKLTAAARSI NLSQPAMSAA ITRLRTYFRD
60 70 80 90 100
ELFTMNGREL VPTPRAEALA PAVREALLHI HLSIISWDPF NPAQSDRSFR
110 120 130 140 150
IILSDFMTLM FFERVVVRVA REAPAVSFEL LPFSDEPDEL LRRGDVDFLI
160 170 180 190 200
LPEMFMSHTH PRAKLFDERF VCVSCPTNQK LPPQLSIDNY VSMGHVAAQF
210 220 230 240 250
GKQRPSVEEW LLREHGLRRR VEVAVPGFTM IPPFLSGTDR IATLPLRLAM
260 270 280 290 300
HFAKAIPLRI TELPQPIFPA FTEAVQWPAP HSSDPASLWM REIFLQEASR
310 320
VEFQSETSAH ALSSSQLPTC L
Length:321
Mass (Da):36,388
Last modified:October 1, 1989 - v1
Checksum:i2EF16B63A8E00284
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M18971 Genomic DNA Translation: AAA26334.1
PIRiA28663

Similar proteinsi

Entry informationi

Entry nameiNODD1_BRAJP
AccessioniPrimary (citable) accession number: P12232
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 1, 1989
Last sequence update: October 1, 1989
Last modified: September 12, 2018
This is version 72 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Plasmid
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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