Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

DNA-directed RNA polymerase subunit beta''

Gene

rpoC2

Organism
Pisum sativum (Garden pea)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.By similarity

Catalytic activityi

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionNucleotidyltransferase, Transferase
Biological processTranscription

Names & Taxonomyi

Protein namesi
Recommended name:
DNA-directed RNA polymerase subunit beta'' (EC:2.7.7.6)
Alternative name(s):
PEP
Plastid-encoded RNA polymerase subunit beta''
Short name:
RNA polymerase subunit beta''
Gene namesi
Name:rpoC2
Encoded oniPlastid; Chloroplast
OrganismiPisum sativum (Garden pea)
Taxonomic identifieri3888 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsFabalesFabaceaePapilionoideae50 kb inversion cladeNPAAA cladeHologaleginaIRL cladeFabeaePisum

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Chloroplast, DNA-directed RNA polymerase, Plastid

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_0000067939‹1 – 1163DNA-directed RNA polymerase subunit beta''Add BLAST›1163

Proteomic databases

PRIDEiP12227

Interactioni

Subunit structurei

In plastids the minimal PEP RNA polymerase catalytic core is composed of four subunits: alpha, beta, beta', and beta''. When a (nuclear-encoded) sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription (By similarity).By similarity

Structurei

3D structure databases

ProteinModelPortaliP12227
SMRiP12227
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Family and domain databases

InterProiView protein in InterPro
IPR007081 RNA_pol_Rpb1_5
PfamiView protein in Pfam
PF04998 RNA_pol_Rpb1_5, 2 hits

Sequencei

Sequence statusi: Fragment.

P12227-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
RLVEVVQHIV VRRTDCGTIR GISVNTRNGM MPEIILIQTL IGRVVAENIY
60 70 80 90 100
IGSRCIVVRN QDIGIGLINR FITFQTQPIF IRTPFTCRNT SWICRLCYGR
110 120 130 140 150
SPIHGDLVEL GEAVGIIAGQ SIGEPGTQLT LRTFHTGGVF TGGTAEYVRA
160 170 180 190 200
PSNGKIKLNE DLVHPTRTRH GYPAFICNID LYVTIESDDI IHNVIIPPKS
210 220 230 240 250
FLLVQNDQYV KSEQVIAEIR AGTYTFNLKE RVRKHIYSDS EGEMHWSTDV
260 270 280 290 300
YHASEFMYSN VHILPKTSHL WILSGKSCRS NTIHFLLRKD QDQITMDSLS
310 320 330 340 350
NGKTNISNLL ERNDQVKHKL FRFNTFGTKE KGISDYSIFN EIICTDHSYP
360 370 380 390 400
AIFHDTFYFL AKRRRNRFLI PFPFQSIQER KNERMSPSGV SIEIPINGIF
410 420 430 440 450
HRNSIFAYFD DPQYRRHSSG ITKYRTIGIH SIFQKEDFIE YRGIKELKPK
460 470 480 490 500
SQIQVDRFFF IPEEVHILPK SSSLMVRNNS LVGIGTPITF NIRSRVGGLV
510 520 530 540 550
RLDKKKKKIE LKIFSGNIHF PGEMDKISRH SAILIPPGTV KKKKCNKSKK
560 570 580 590 600
IKNWIYVQWI ATTKKKYFVL VRPVILYEIP DSNNFVKLFP QDLFQEKDNL
610 620 630 640 650
ELKVVNYILY GNGKSIRGIS DTRIQLVRTC LVFNWDDGKN SSSIEEAPAS
660 670 680 690 700
FIEVRTNGLI EYFLRIDLVK SNTSYIRKRN EPSGFGLIGD NKSDRINPFF
710 720 730 740 750
SIHSKGKIQQ SLSQNHGTIR MLLNRNKECR SWIILSSSNC FQMRPFNNEK
760 770 780 790 800
SHNGIKKDPI ISINNNGPLG IALQVANFYS LYHLITHNQI SIIKNLQLDK
810 820 830 840 850
LTEIFQVIKY YLMDENDKIC KPDLYSNIIL NPFHLNWFFL HHFYCEKTFT
860 870 880 890 900
RISLGQFICE NICIAQMKNR PHLKLKSGQV IIVQMDSVII RSANPYLATP
910 920 930 940 950
GATIHGHYGE ILSQGDILVT FIYEKSRSGD ITQGLPKVEQ ILEIRSIDSI
960 970 980 990 1000
SMNLEKRIDA WNECITKIIG IPWGFLIGAE LTIAQSRISL VNKIQKVYRS
1010 1020 1030 1040 1050
QGVHIHNRHI EIIVRQITSK VLVSEDGMSN IFLPGELIGL LRAERTGRAL
1060 1070 1080 1090 1100
EEAICYRALL LGVTKTSLNT QSFISEASFQ ETARVLAKAA LRGRIDWLKG
1110 1120 1130 1140 1150
LKENVVLGGM IPVGTGFKRI MHRSRSRQHN KITRKKKLFE VEIRNLLFHH
1160
RKLLDFANFK EFM
Length:1,163
Mass (Da):133,599
Last modified:October 1, 1989 - v1
Checksum:iC92E7BE0A3FDB525
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei11

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X03912 Genomic DNA Translation: CAA27545.1
PIRiS07137

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X03912 Genomic DNA Translation: CAA27545.1
PIRiS07137

3D structure databases

ProteinModelPortaliP12227
SMRiP12227
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PRIDEiP12227

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

InterProiView protein in InterPro
IPR007081 RNA_pol_Rpb1_5
PfamiView protein in Pfam
PF04998 RNA_pol_Rpb1_5, 2 hits
ProtoNetiSearch...

Entry informationi

Entry nameiRPOC2_PEA
AccessioniPrimary (citable) accession number: P12227
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 1, 1989
Last sequence update: October 1, 1989
Last modified: September 12, 2018
This is version 74 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Documents

  1. SIMILARITY comments
    Index of protein domains and families
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again