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Entry version 180 (08 May 2019)
Sequence version 3 (15 Dec 1998)
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Protein

Antigen-presenting glycoprotein CD1d1

Gene

Cd1d1

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Antigen-presenting protein that binds self and non-self glycolipids and presents them to T-cell receptors on natural killer T-cells.3 Publications

Miscellaneous

During protein synthesis and maturation, CD1 family members bind endogenous lipids that are replaced by lipid or glycolipid antigens when the proteins are internalized and pass through endosomes, before trafficking back to the cell surface.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Function’ section describes the interaction between a single amino acid and another chemical entity. Priority is given to the annotation of physiological ligands.<p><a href='/help/binding' target='_top'>More...</a></p>Binding sitei98GlycolipidCombined sources3 Publications1

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Biological processImmunity, Innate immunity

Enzyme and pathway databases

Reactome - a knowledgebase of biological pathways and processes

More...
Reactomei
R-MMU-198933 Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Antigen-presenting glycoprotein CD1d1
Alternative name(s):
CD_antigen: CD1d.1
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:Cd1d1
Synonyms:Cd1.1
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiMus musculus (Mouse)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri10090 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000589 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unplaced

Organism-specific databases

Mouse genome database (MGD) from Mouse Genome Informatics (MGI)

More...
MGIi
MGI:107674 Cd1d1

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular_location_section">'Subcellular location'</a> section describes the subcellular compartment where each non-membrane region of a membrane-spanning protein is found.<p><a href='/help/topo_dom' target='_top'>More...</a></p>Topological domaini22 – 305ExtracellularSequence analysisAdd BLAST284
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular_location_section">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei306 – 326HelicalSequence analysisAdd BLAST21
Topological domaini327 – 336CytoplasmicSequence analysis10

Keywords - Cellular componenti

Cell membrane, Endosome, Lysosome, Membrane

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section denotes the presence of an N-terminal signal peptide.<p><a href='/help/signal' target='_top'>More...</a></p>Signal peptidei1 – 21Sequence analysisAdd BLAST21
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_000001459122 – 336Antigen-presenting glycoprotein CD1d1Add BLAST315

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/ptm_processing_section">PTM / Processing</a> section specifies the position and type of each covalently attached glycan group (mono-, di-, or polysaccharide).<p><a href='/help/carbohyd' target='_top'>More...</a></p>Glycosylationi25N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi38N-linked (GlcNAc...) asparagine3 Publications1
Glycosylationi60N-linked (GlcNAc...) asparagine3 Publications1
<p>This subsection of the PTM / Processing":/help/ptm_processing_section section describes the positions of cysteine residues participating in disulfide bonds.<p><a href='/help/disulfid' target='_top'>More...</a></p>Disulfide bondi122 ↔ 186Combined sources5 Publications
Glycosylationi128N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi183N-linked (GlcNAc...) asparagine3 Publications1
Disulfide bondi226 ↔ 281Combined sources5 Publications

<p>This subsection of the <a href="http://www.uniprot.org/help/ptm_processing_section">PTM/processing</a> section describes post-translational modifications (PTMs). This subsection <strong>complements</strong> the information provided at the sequence level or describes modifications for which <strong>position-specific data is not yet available</strong>.<p><a href='/help/post-translational_modification' target='_top'>More...</a></p>Post-translational modificationi

N-glycosylated.5 Publications

Keywords - PTMi

Disulfide bond, Glycoprotein

Proteomic databases

jPOST - Japan Proteome Standard Repository/Database

More...
jPOSTi
P11609

MaxQB - The MaxQuant DataBase

More...
MaxQBi
P11609

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
P11609

PeptideAtlas

More...
PeptideAtlasi
P11609

PRoteomics IDEntifications database

More...
PRIDEi
P11609

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
P11609

Comprehensive resource for the study of protein post-translational modifications (PTMs) in human, mouse and rat.

More...
PhosphoSitePlusi
P11609

SwissPalm database of S-palmitoylation events

More...
SwissPalmi
P11609

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the ‘Expression’ section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified ‘at protein level’. <br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Expressed on cortical thymocytes, on certain T-cell leukemias, and in various other tissues.

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction_section">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Heterodimer with B2M (beta-2-microglobulin). Interacts with MHC II and CD74.6 Publications

GO - Molecular functioni

Protein-protein interaction databases

Database of interacting proteins

More...
DIPi
DIP-6127N

Protein interaction database and analysis system

More...
IntActi
P11609, 1 interactor

STRING: functional protein association networks

More...
STRINGi
10090.ENSMUSP00000029717

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

Secondary structure

1336
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details

3D structure databases

Select the link destinations:

Protein Data Bank Europe

More...
PDBei

Protein Data Bank RCSB

More...
RCSB PDBi

Protein Data Bank Japan

More...
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1CD1X-ray2.67A/C22-336[»]
1Z5LX-ray2.20A/C19-297[»]
1ZHNX-ray2.80A25-297[»]
2AKRX-ray1.90A/C19-297[»]
2FIKX-ray1.80A19-297[»]
2GAZX-ray2.61A19-297[»]
2Q7YX-ray1.95A/C19-297[»]
3ARBX-ray2.70A19-297[»]
3ARDX-ray3.01A19-297[»]
3AREX-ray2.80A19-297[»]
3ARFX-ray2.90A19-297[»]
3ARGX-ray3.00A19-297[»]
3AU1X-ray2.50A19-297[»]
3G08X-ray1.60A19-297[»]
3GMLX-ray1.70A19-297[»]
3GMMX-ray1.80A19-297[»]
3GMNX-ray1.70A19-297[»]
3GMOX-ray1.60A19-297[»]
3GMPX-ray1.70A19-297[»]
3GMQX-ray1.80A19-297[»]
3GMRX-ray1.90A19-297[»]
3HE6X-ray2.90A19-297[»]
3HE7X-ray2.80A19-297[»]
3ILPX-ray1.85A19-297[»]
3ILQX-ray2.05C19-297[»]
3MA7X-ray2.29A/C19-297[»]
3O8XX-ray2.74A19-297[»]
3O9WX-ray2.80A19-297[»]
3QI9X-ray2.30A19-297[»]
3QUXX-ray2.91A19-297[»]
3QUYX-ray2.25A19-297[»]
3QUZX-ray2.30A19-297[»]
3RTQX-ray2.80A19-297[»]
3RUGX-ray2.20A/C19-297[»]
3RZCX-ray2.80A19-297[»]
3SCMX-ray2.50A19-297[»]
3SDAX-ray2.80A19-297[»]
3SDCX-ray3.10A19-297[»]
3SDDX-ray3.00A19-297[»]
3T1FX-ray1.70A19-297[»]
3TA3X-ray2.70A19-297[»]
3TN0X-ray3.20A19-297[»]
3TO4X-ray3.10A19-297[»]
3TVMX-ray2.80A/E19-297[»]
3UBXX-ray3.10A/D19-297[»]
4APQX-ray3.00A19-297[»]
4EI5X-ray3.10A/E19-297[»]
4ELMX-ray3.48A/C19-297[»]
4IRJX-ray3.00A19-297[»]
4IRSX-ray2.80A19-297[»]
4MNGX-ray3.01A/C204-297[»]
4MQ7X-ray2.60A205-297[»]
4MX7X-ray2.24A19-297[»]
4Y16X-ray2.60A19-297[»]
4Y2DX-ray3.05A/E19-297[»]
4Y4FX-ray3.19A/E19-297[»]
4Y4HX-ray3.10A/E19-297[»]
4Y4KX-ray2.90A19-297[»]
4ZAKX-ray2.82A19-297[»]
5EFIX-ray1.80A19-297[»]
5FKPX-ray1.80A19-297[»]
5TW2X-ray1.75A19-297[»]
5TW5X-ray1.85A19-297[»]
5VCJX-ray3.16A19-297[»]
6BNKX-ray3.20A/E19-297[»]
6BNLX-ray2.60A/E19-297[»]

SWISS-MODEL Repository - a database of annotated 3D protein structure models

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SMRi
P11609

Database of comparative protein structure models

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ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

Miscellaneous databases

Relative evolutionary importance of amino acids within a protein sequence

More...
EvolutionaryTracei
P11609

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini207 – 297Ig-likeAdd BLAST91

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni171 – 174Glycolipid bindingCombined sources4 Publications4

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a short (usually not more than 20 amino acids) conserved sequence motif of biological significance.<p><a href='/help/motif' target='_top'>More...</a></p>Motifi332 – 335Internalization signal4

Keywords - Domaini

Immunoglobulin domain, Signal, Transmembrane, Transmembrane helix

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG410ITUC Eukaryota
ENOG4111EG6 LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000111666

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
P11609

KEGG Orthology (KO)

More...
KOi
K06448

Database of Orthologous Groups

More...
OrthoDBi
827472at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
P11609

TreeFam database of animal gene trees

More...
TreeFami
TF336723

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
2.60.40.10, 1 hit
3.30.500.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR007110 Ig-like_dom
IPR036179 Ig-like_dom_sf
IPR013783 Ig-like_fold
IPR003597 Ig_C1-set
IPR011161 MHC_I-like_Ag-recog
IPR037055 MHC_I-like_Ag-recog_sf
IPR011162 MHC_I/II-like_Ag-recog

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF07654 C1-set, 1 hit
PF16497 MHC_I_3, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00407 IGc1, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF48726 SSF48726, 1 hit
SSF54452 SSF54452, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50835 IG_LIKE, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is in its mature form or if it represents the precursor.<p><a href='/help/sequence_processing' target='_top'>More...</a></p>Sequence processingi: The displayed sequence is further processed into a mature form.

This entry has 1 described isoform and 2 potential isoforms that are computationally mapped.Show allAlign All

P11609-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MRYLPWLLLW AFLQVWGQSE AQQKNYTFRC LQMSSFANRS WSRTDSVVWL
60 70 80 90 100
GDLQTHRWSN DSATISFTKP WSQGKLSNQQ WEKLQHMFQV YRVSFTRDIQ
110 120 130 140 150
ELVKMMSPKE DYPIEIQLSA GCEMYPGNAS ESFLHVAFQG KYVVRFWGTS
160 170 180 190 200
WQTVPGAPSW LDLPIKVLNA DQGTSATVQM LLNDTCPLFV RGLLEAGKSD
210 220 230 240 250
LEKQEKPVAW LSSVPSSADG HRQLVCHVSG FYPKPVWVMW MRGDQEQQGT
260 270 280 290 300
HRGDFLPNAD ETWYLQATLD VEAGEEAGLA CRVKHSSLGG QDIILYWDAR
310 320 330
QAPVGLIVFI VLIMLVVVGA VVYYIWRRRS AYQDIR
Length:336
Mass (Da):38,554
Last modified:December 15, 1998 - v3
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iE4A666E1942E0114
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A0R4J090A0A0R4J090_MOUSE
Antigen-presenting glycoprotein CD1...
Cd1d1 mCG_3074
336Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
E9Q395E9Q395_MOUSE
Antigen-presenting glycoprotein CD1...
Cd1d1
205Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti219D → H in BAB22206 (PubMed:16141072).Curated1
Sequence conflicti219D → H in CAA31568 (PubMed:2460336).Curated1
Sequence conflicti240W → C in AAA37391 (PubMed:1702817).Curated1

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
M63695 mRNA Translation: AAA37391.1
AK002582 mRNA Translation: BAB22206.1
X13170 Genomic DNA Translation: CAA31568.1

The Consensus CDS (CCDS) project

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CCDSi
CCDS17449.1

Protein sequence database of the Protein Information Resource

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PIRi
I49581
S01297

NCBI Reference Sequences

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RefSeqi
NP_031665.2, NM_007639.3

Genome annotation databases

Database of genes from NCBI RefSeq genomes

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GeneIDi
12479

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
mmu:12479

UCSC genome browser

More...
UCSCi
uc012cre.1 mouse

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

<p>This subsection of the <a href="http://www.uniprot.org/manual/cross_references_section">Cross-references</a> section provides links to various web resources that are relevant for a specific protein.<p><a href='/help/web_resource' target='_top'>More...</a></p>Web resourcesi

Functional Glycomics Gateway - Glycan Binding

CD1d1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M63695 mRNA Translation: AAA37391.1
AK002582 mRNA Translation: BAB22206.1
X13170 Genomic DNA Translation: CAA31568.1
CCDSiCCDS17449.1
PIRiI49581
S01297
RefSeqiNP_031665.2, NM_007639.3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1CD1X-ray2.67A/C22-336[»]
1Z5LX-ray2.20A/C19-297[»]
1ZHNX-ray2.80A25-297[»]
2AKRX-ray1.90A/C19-297[»]
2FIKX-ray1.80A19-297[»]
2GAZX-ray2.61A19-297[»]
2Q7YX-ray1.95A/C19-297[»]
3ARBX-ray2.70A19-297[»]
3ARDX-ray3.01A19-297[»]
3AREX-ray2.80A19-297[»]
3ARFX-ray2.90A19-297[»]
3ARGX-ray3.00A19-297[»]
3AU1X-ray2.50A19-297[»]
3G08X-ray1.60A19-297[»]
3GMLX-ray1.70A19-297[»]
3GMMX-ray1.80A19-297[»]
3GMNX-ray1.70A19-297[»]
3GMOX-ray1.60A19-297[»]
3GMPX-ray1.70A19-297[»]
3GMQX-ray1.80A19-297[»]
3GMRX-ray1.90A19-297[»]
3HE6X-ray2.90A19-297[»]
3HE7X-ray2.80A19-297[»]
3ILPX-ray1.85A19-297[»]
3ILQX-ray2.05C19-297[»]
3MA7X-ray2.29A/C19-297[»]
3O8XX-ray2.74A19-297[»]
3O9WX-ray2.80A19-297[»]
3QI9X-ray2.30A19-297[»]
3QUXX-ray2.91A19-297[»]
3QUYX-ray2.25A19-297[»]
3QUZX-ray2.30A19-297[»]
3RTQX-ray2.80A19-297[»]
3RUGX-ray2.20A/C19-297[»]
3RZCX-ray2.80A19-297[»]
3SCMX-ray2.50A19-297[»]
3SDAX-ray2.80A19-297[»]
3SDCX-ray3.10A19-297[»]
3SDDX-ray3.00A19-297[»]
3T1FX-ray1.70A19-297[»]
3TA3X-ray2.70A19-297[»]
3TN0X-ray3.20A19-297[»]
3TO4X-ray3.10A19-297[»]
3TVMX-ray2.80A/E19-297[»]
3UBXX-ray3.10A/D19-297[»]
4APQX-ray3.00A19-297[»]
4EI5X-ray3.10A/E19-297[»]
4ELMX-ray3.48A/C19-297[»]
4IRJX-ray3.00A19-297[»]
4IRSX-ray2.80A19-297[»]
4MNGX-ray3.01A/C204-297[»]
4MQ7X-ray2.60A205-297[»]
4MX7X-ray2.24A19-297[»]
4Y16X-ray2.60A19-297[»]
4Y2DX-ray3.05A/E19-297[»]
4Y4FX-ray3.19A/E19-297[»]
4Y4HX-ray3.10A/E19-297[»]
4Y4KX-ray2.90A19-297[»]
4ZAKX-ray2.82A19-297[»]
5EFIX-ray1.80A19-297[»]
5FKPX-ray1.80A19-297[»]
5TW2X-ray1.75A19-297[»]
5TW5X-ray1.85A19-297[»]
5VCJX-ray3.16A19-297[»]
6BNKX-ray3.20A/E19-297[»]
6BNLX-ray2.60A/E19-297[»]
SMRiP11609
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-6127N
IntActiP11609, 1 interactor
STRINGi10090.ENSMUSP00000029717

PTM databases

iPTMnetiP11609
PhosphoSitePlusiP11609
SwissPalmiP11609

Proteomic databases

jPOSTiP11609
MaxQBiP11609
PaxDbiP11609
PeptideAtlasiP11609
PRIDEiP11609

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi12479
KEGGimmu:12479
UCSCiuc012cre.1 mouse

Organism-specific databases

Comparative Toxicogenomics Database

More...
CTDi
12479
MGIiMGI:107674 Cd1d1

Phylogenomic databases

eggNOGiENOG410ITUC Eukaryota
ENOG4111EG6 LUCA
HOGENOMiHOG000111666
InParanoidiP11609
KOiK06448
OrthoDBi827472at2759
PhylomeDBiP11609
TreeFamiTF336723

Enzyme and pathway databases

ReactomeiR-MMU-198933 Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell

Miscellaneous databases

EvolutionaryTraceiP11609

Protein Ontology

More...
PROi
PR:P11609

The Stanford Online Universal Resource for Clones and ESTs

More...
SOURCEi
Search...

Family and domain databases

Gene3Di2.60.40.10, 1 hit
3.30.500.10, 1 hit
InterProiView protein in InterPro
IPR007110 Ig-like_dom
IPR036179 Ig-like_dom_sf
IPR013783 Ig-like_fold
IPR003597 Ig_C1-set
IPR011161 MHC_I-like_Ag-recog
IPR037055 MHC_I-like_Ag-recog_sf
IPR011162 MHC_I/II-like_Ag-recog
PfamiView protein in Pfam
PF07654 C1-set, 1 hit
PF16497 MHC_I_3, 1 hit
SMARTiView protein in SMART
SM00407 IGc1, 1 hit
SUPFAMiSSF48726 SSF48726, 1 hit
SSF54452 SSF54452, 1 hit
PROSITEiView protein in PROSITE
PS50835 IG_LIKE, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiCD1D1_MOUSE
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: P11609
Secondary accession number(s): Q91XK9
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 1, 1989
Last sequence update: December 15, 1998
Last modified: May 8, 2019
This is version 180 of the entry and version 3 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
UniProt is an ELIXIR core data resource
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