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Protein

50S ribosomal protein L24

Gene

rpl24

Organism
Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) (Halobacterium marismortui)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.By similarity
Stabilizes the tertiary rRNA structure within the 23S rRNA domain (domain I) to which it binds. Located at the polypeptide exit tunnel on the outside of the subunit.

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L24
Alternative name(s):
Hl15
Hl16
Hmal24
Gene namesi
Name:rpl24
Ordered Locus Names:rrnAC1601
OrganismiHaloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) (Halobacterium marismortui)
Taxonomic identifieri272569 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaHalobacteriaHalobacterialesHaloarculaceaeHaloarcula
Proteomesi
  • UP000001169 Componenti: Chromosome I

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved2 Publications
ChainiPRO_00001307672 – 12050S ribosomal protein L24Add BLAST119

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit. Interacts weakly with protein L4.2 Publications

Protein-protein interaction databases

STRINGi272569.rrnAC1601

Structurei

Secondary structure

1120
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi5 – 13Combined sources9
Helixi17 – 19Combined sources3
Helixi21 – 24Combined sources4
Beta strandi25 – 28Combined sources4
Helixi30 – 36Combined sources7
Beta strandi39 – 42Combined sources4
Beta strandi48 – 51Combined sources4
Turni55 – 58Combined sources4
Beta strandi60 – 67Combined sources8
Turni68 – 71Combined sources4
Beta strandi72 – 75Combined sources4
Beta strandi79 – 81Combined sources3
Beta strandi83 – 85Combined sources3
Beta strandi87 – 89Combined sources3
Helixi94 – 96Combined sources3
Beta strandi97 – 101Combined sources5
Helixi107 – 114Combined sources8
Beta strandi116 – 118Combined sources3

3D structure databases

ProteinModelPortaliP10972
SMRiP10972
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP10972

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiarCOG04094 Archaea
COG0198 LUCA
HOGENOMiHOG000216571
KOiK02895
OMAiVRIMRGD
OrthoDBiPOG093Z0H7W

Family and domain databases

Gene3Di2.30.30.30, 1 hit
HAMAPiMF_01326_A Ribosomal_L24_A, 1 hit
InterProiView protein in InterPro
IPR005824 KOW
IPR014722 Rib_L2_dom2
IPR005825 Ribosomal_L24/26_CS
IPR005756 Ribosomal_L26/L24P_euk/arc
IPR008991 Translation_prot_SH3-like_sf
PANTHERiPTHR11143 PTHR11143, 1 hit
PfamiView protein in Pfam
PF00467 KOW, 1 hit
PF16906 Ribosomal_L26, 1 hit
SMARTiView protein in SMART
SM00739 KOW, 1 hit
SUPFAMiSSF50104 SSF50104, 1 hit
TIGRFAMsiTIGR01080 rplX_A_E, 1 hit
PROSITEiView protein in PROSITE
PS01108 RIBOSOMAL_L24, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P10972-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKQPDKQRK SQRRAPLHER HKQVRATLSA DLREEYGQRN VRVNAGDTVE
60 70 80 90 100
VLRGDFAGEE GEVINVDLDK AVIHVEDVTL EKTDGEEVPR PLDTSNVRVT
110 120
DLDLEDEKRE ARLESEDDSA
Length:120
Mass (Da):13,648
Last modified:January 23, 2007 - v3
Checksum:iBDEEF21DE1587096
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti21H → R AA sequence (PubMed:3191994).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X55311 Genomic DNA Translation: CAA39019.1
AY596297 Genomic DNA Translation: AAV46518.1
PIRiS10735 R5HS24
RefSeqiWP_004957398.1, NC_006396.1

Genome annotation databases

EnsemblBacteriaiAAV46518; AAV46518; rrnAC1601
GeneIDi3128440
KEGGihma:rrnAC1601
PATRICifig|272569.17.peg.2290

Similar proteinsi

Entry informationi

Entry nameiRL24_HALMA
AccessioniPrimary (citable) accession number: P10972
Secondary accession number(s): Q5V1T4
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 1, 1989
Last sequence update: January 23, 2007
Last modified: November 22, 2017
This is version 138 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

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