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Entry version 64 (18 Sep 2019)
Sequence version 1 (25 Jan 2012)
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Protein

RANBP2-like and GRIP domain-containing protein 1

Gene

RGPD1

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at transcript leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Miscellaneous

One of the 8 copies of RANBP2 clustered close to the chromosome 2 centromere.

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

  • Ran GTPase binding Source: GO_Central

GO - Biological processi

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
RANBP2-like and GRIP domain-containing protein 1
Alternative name(s):
Ran-binding protein 2-like 6
Short name:
RanBP2-like 6
Short name:
RanBP2L6
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:RGPD1
Synonyms:RANBP2L6, RGP1
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiHomo sapiens (Human)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri9606 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000005640 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 2

Organism-specific databases

Human Gene Nomenclature Database

More...
HGNCi
HGNC:32414 RGPD1

Online Mendelian Inheritance in Man (OMIM)

More...
MIMi
612704 gene

neXtProt; the human protein knowledge platform

More...
neXtProti
NX_P0DJD0

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

Polymorphism and mutation databases

BioMuta curated single-nucleotide variation and disease association database

More...
BioMutai
RGPD1

Domain mapping of disease mutations (DMDM)

More...
DMDMi
374253660

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00002049191 – 1748RANBP2-like and GRIP domain-containing protein 1Add BLAST1748

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section specifies the position and type of each modified residue excluding <a href="http://www.uniprot.org/manual/lipid">lipids</a>, <a href="http://www.uniprot.org/manual/carbohyd">glycans</a> and <a href="http://www.uniprot.org/manual/crosslnk">protein cross-links</a>.<p><a href='/help/mod_res' target='_top'>More...</a></p>Modified residuei14PhosphothreonineBy similarity1

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - PTMi

Phosphoprotein

Proteomic databases

Encyclopedia of Proteome Dynamics

More...
EPDi
P0DJD0

jPOST - Japan Proteome Standard Repository/Database

More...
jPOSTi
P0DJD0

MassIVE - Mass Spectrometry Interactive Virtual Environment

More...
MassIVEi
P0DJD0

MaxQB - The MaxQuant DataBase

More...
MaxQBi
P0DJD0

PeptideAtlas

More...
PeptideAtlasi
P0DJD0

PRoteomics IDEntifications database

More...
PRIDEi
P0DJD0

ProteomicsDB human proteome resource

More...
ProteomicsDBi
52538

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
P0DJD0

Comprehensive resource for the study of protein post-translational modifications (PTMs) in human, mouse and rat.

More...
PhosphoSitePlusi
P0DJD0

SwissPalm database of S-palmitoylation events

More...
SwissPalmi
P0DJD0

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...
Bgeei
ENSG00000187627 Expressed in 86 organ(s), highest expression level in testis

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
P0DJD0 baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
P0DJD0 HS

Organism-specific databases

Human Protein Atlas

More...
HPAi
HPA049497
HPA051675
HPA067564

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

GO - Molecular functioni

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGrid)

More...
BioGridi
134847, 7 interactors

Protein interaction database and analysis system

More...
IntActi
P0DJD0, 2 interactors

STRING: functional protein association networks

More...
STRINGi
9606.ENSP00000453170

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
P0DJD0

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section indicates the positions and types of repeated sequence motifs or repeated domains within the protein.<p><a href='/help/repeat' target='_top'>More...</a></p>Repeati51 – 84TPR 1Add BLAST34
Repeati575 – 608TPR 2Add BLAST34
Repeati639 – 672TPR 3Add BLAST34
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini1021 – 1157RanBD1 1PROSITE-ProRule annotationAdd BLAST137
Domaini1318 – 1454RanBD1 2PROSITE-ProRule annotationAdd BLAST137
Domaini1685 – 1735GRIPPROSITE-ProRule annotationAdd BLAST51

Keywords - Domaini

Repeat, TPR repeat

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG0864 Eukaryota
COG5171 LUCA

Ensembl GeneTree

More...
GeneTreei
ENSGT00940000164065

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
P0DJD0

Database of Orthologous Groups

More...
OrthoDBi
201737at2759

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
1.25.40.10, 1 hit
2.30.29.30, 2 hits

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR032023 GCC2_Rab_bind
IPR000237 GRIP_dom
IPR011993 PH-like_dom_sf
IPR000156 Ran_bind_dom
IPR013026 TPR-contain_dom
IPR011990 TPR-like_helical_dom_sf
IPR019734 TPR_repeat

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF01465 GRIP, 1 hit
PF16704 Rab_bind, 1 hit
PF00638 Ran_BP1, 2 hits

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00755 Grip, 1 hit
SM00160 RanBD, 2 hits
SM00028 TPR, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF48452 SSF48452, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50913 GRIP, 1 hit
PS50196 RANBD1, 2 hits
PS50005 TPR, 1 hit
PS50293 TPR_REGION, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry has 1 described isoform and 4 potential isoforms that are computationally mapped.Show allAlign All

P0DJD0-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MNVMGFNTDR LAWTRNKLRG FYFAKLYYEA KEYDLAKKYV CTYLSVQERD
60 70 80 90 100
PRAHRFLGLL YELEENTEKA VECYRRSLEL NPPQKDLVLK IAELLCKNDV
110 120 130 140 150
TDGRAKYWVE RAAKLFPGSP AIYKLKEHLL DCEGEDGWNK LFDWIQSELY
160 170 180 190 200
VRPDDVHMNI RLVELYRSNK RLKDAVARCH EAERNIALRS SLEWNSCVVQ
210 220 230 240 250
TLKEYLESLQ CLESDKSDWR ATNTDLLLAY ANLMLLTLST RDVQESRELL
260 270 280 290 300
ESFDSALQSA KSSLGGNDEL SATFLEMKGH FYMHAGSLLL KMGQHGNNVQ
310 320 330 340 350
WQALSELAAL CYVIAFQVPR PKIKLIKGEA GQNLLEMMAC DRLSQSGHML
360 370 380 390 400
LNLSRGKQDF LKEVVETFAN KSGQSVLYNA LFSSQSSKDT SFLGSDDIGN
410 420 430 440 450
IDVQEPELED LARYDVGAIQ AHNGSLQHLT WLGLQWNSLP ALPGIRKWLK
460 470 480 490 500
QLFHHLPQET SRLETNAPES ICILDLEVFL LGVVYTSHLQ LKEKCNSHHS
510 520 530 540 550
SYQPLCLPLP VCKRLCTERQ KSWWDAVCTL IHRKAVPGNS AELRLVVQHE
560 570 580 590 600
INTLRAQEKH GLQPALLVHW AKCLQKMGRG LNSSYDQQEY IGRSVHYWKK
610 620 630 640 650
VLPLLKIIKK NSIPEPIDPL FKHFHSVDIQ ASEIVEYEED AHITFAILDA
660 670 680 690 700
VHGNIEDAVT AFESIKSVVS YWNLALIFHR KAEDIENDAV FPEEQEECKN
710 720 730 740 750
YLRKTRDYLI KIIDDSDSNL SVVKKLPVPL ESVKEMLKSV MQELEDYSEG
760 770 780 790 800
GPLYKNGSLR NADSEIKHST PSPTKYSLSP SKSYKYSPKT PPRWAEDQNS
810 820 830 840 850
LRKMICQEVK AITKLNSSKS ASRHRWPTEN YGPDSVPDGY QGSQTFHGAP
860 870 880 890 900
LTVATTGPSV YYSQSPAYNS QYLLRPAANV TPTKGSSNTE FKSTKEGFSI
910 920 930 940 950
AVSADGFKFG ISEPGNQEKK SEKPLENDTG FQAQDISGQK NGRGVIFGQT
960 970 980 990 1000
SSTFTFADVA KSTSGEGFQF GKKDPNFKGF SGAGEKLFSS QCGKMANKAN
1010 1020 1030 1040 1050
TSGDFEKDDD ACKTEDSDDI HFEPVVQMPE KVELVTGEEG EKVLYSQGVK
1060 1070 1080 1090 1100
LFRFDAEISQ WKERGLGNLK ILKNEVNGKP RMLMRRDQVL KVCANHWITT
1110 1120 1130 1140 1150
TMNLKPLSGS DRAWMWLASD FSDGDAKLER LAAQFKTPEL AEEFKQKFEE
1160 1170 1180 1190 1200
CQRLLLDIPL QTPHKLVDTG RAAKLIQRAE EMKSGLKDFK TFLTNDQTKV
1210 1220 1230 1240 1250
TEEENKGSGT GAAGASDTTI KPNPENTGPT LEWDNYDLRE DALDDNVSSS
1260 1270 1280 1290 1300
SVHDSPLASS PVRKNIFRFD ESTTGFNFSF KSALSLSKSP AKLNQSGTSV
1310 1320 1330 1340 1350
GTDEESDVTQ EEERDGQYFE PVVPLPDLVE VSSGEENEQV VFSHRAELYR
1360 1370 1380 1390 1400
YDKDVGQWKE RGIGDIKILQ NYDNKQVRIV MRRDQVLKLC ANHRITPDMS
1410 1420 1430 1440 1450
LQNMKGTERV WVWTACDFAD GERKVEHLAV RFKLQDVADS FKKIFDEAKT
1460 1470 1480 1490 1500
AQEKDSLITP HVSRSSTPRE SPCGKIAVAV LEETTRERTD VIQGDDVADA
1510 1520 1530 1540 1550
ASEVEVSSTS ETTTKAVVSP PKFVFGSESV KRIFSSEKSN PFAFGNSSAT
1560 1570 1580 1590 1600
GSLFGFSFNA PLKSNDSETS SVAQSGSESK VEPKKCELSK NSDIEQSSDS
1610 1620 1630 1640 1650
KVKNLSASFP MEESSINYTF KTPEKEPPLW HAEFTKEELV QKLSSTTKSA
1660 1670 1680 1690 1700
DQLNGLLRET EATSAVLMEQ IKLLKSEIRR LERNQEESAA NVEHLKNVLL
1710 1720 1730 1740
QFIFLKPGSE RESLLPVINT MLQLSPEEKG KLAAVAQGLQ ETSIPKKK
Length:1,748
Mass (Da):196,662
Last modified:January 25, 2012 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iF714EAF3129B388A
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 4 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
F8VYC4F8VYC4_HUMAN
RANBP2-like and GRIP domain-contain...
RGPD1
1,756Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A286YES2A0A286YES2_HUMAN
RANBP2-like and GRIP domain-contain...
RGPD1
1,756Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
H7C1V8H7C1V8_HUMAN
RANBP2-like and GRIP domain-contain...
RGPD1
31Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A286YEQ5A0A286YEQ5_HUMAN
RANBP2-like and GRIP domain-contain...
RGPD1
39Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti1212A → S in CAH18184 (PubMed:17974005).Curated1
Sequence conflicti1596Q → H in CAH18184 (PubMed:17974005).Curated1

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
CR749330 mRNA Translation: CAH18184.1
AC111200 Genomic DNA No translation available.

The Consensus CDS (CCDS) project

More...
CCDSi
CCDS46358.2

NCBI Reference Sequences

More...
RefSeqi
NP_001019628.3, NM_001024457.3

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...
Ensembli
ENST00000409776; ENSP00000386808; ENSG00000187627
ENST00000559485; ENSP00000453170; ENSG00000187627

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
400966

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
hsa:400966

UCSC genome browser

More...
UCSCi
uc021vkh.2 human

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR749330 mRNA Translation: CAH18184.1
AC111200 Genomic DNA No translation available.
CCDSiCCDS46358.2
RefSeqiNP_001019628.3, NM_001024457.3

3D structure databases

SMRiP0DJD0
ModBaseiSearch...

Protein-protein interaction databases

BioGridi134847, 7 interactors
IntActiP0DJD0, 2 interactors
STRINGi9606.ENSP00000453170

PTM databases

iPTMnetiP0DJD0
PhosphoSitePlusiP0DJD0
SwissPalmiP0DJD0

Polymorphism and mutation databases

BioMutaiRGPD1
DMDMi374253660

Proteomic databases

EPDiP0DJD0
jPOSTiP0DJD0
MassIVEiP0DJD0
MaxQBiP0DJD0
PeptideAtlasiP0DJD0
PRIDEiP0DJD0
ProteomicsDBi52538

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000409776; ENSP00000386808; ENSG00000187627
ENST00000559485; ENSP00000453170; ENSG00000187627
GeneIDi400966
KEGGihsa:400966
UCSCiuc021vkh.2 human

Organism-specific databases

Comparative Toxicogenomics Database

More...
CTDi
400966

GeneCards: human genes, protein and diseases

More...
GeneCardsi
RGPD1
HGNCiHGNC:32414 RGPD1
HPAiHPA049497
HPA051675
HPA067564
MIMi612704 gene
neXtProtiNX_P0DJD0

GenAtlas: human gene database

More...
GenAtlasi
Search...

Phylogenomic databases

eggNOGiKOG0864 Eukaryota
COG5171 LUCA
GeneTreeiENSGT00940000164065
InParanoidiP0DJD0
OrthoDBi201737at2759

Miscellaneous databases

ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data

More...
ChiTaRSi
RGPD1 human

Database of phenotypes from RNA interference screens in Drosophila and Homo sapiens

More...
GenomeRNAii
400966

Pharos

More...
Pharosi
P0DJD0

Protein Ontology

More...
PROi
PR:P0DJD0

The Stanford Online Universal Resource for Clones and ESTs

More...
SOURCEi
Search...

Gene expression databases

BgeeiENSG00000187627 Expressed in 86 organ(s), highest expression level in testis
ExpressionAtlasiP0DJD0 baseline and differential
GenevisibleiP0DJD0 HS

Family and domain databases

Gene3Di1.25.40.10, 1 hit
2.30.29.30, 2 hits
InterProiView protein in InterPro
IPR032023 GCC2_Rab_bind
IPR000237 GRIP_dom
IPR011993 PH-like_dom_sf
IPR000156 Ran_bind_dom
IPR013026 TPR-contain_dom
IPR011990 TPR-like_helical_dom_sf
IPR019734 TPR_repeat
PfamiView protein in Pfam
PF01465 GRIP, 1 hit
PF16704 Rab_bind, 1 hit
PF00638 Ran_BP1, 2 hits
SMARTiView protein in SMART
SM00755 Grip, 1 hit
SM00160 RanBD, 2 hits
SM00028 TPR, 1 hit
SUPFAMiSSF48452 SSF48452, 1 hit
PROSITEiView protein in PROSITE
PS50913 GRIP, 1 hit
PS50196 RANBD1, 2 hits
PS50005 TPR, 1 hit
PS50293 TPR_REGION, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

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ProtoNeti
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MobiDB: a database of protein disorder and mobility annotations

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MobiDBi
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<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiRGPD1_HUMAN
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: P0DJD0
Secondary accession number(s): P0C839, Q68DN6, Q6V1X0
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 25, 2012
Last sequence update: January 25, 2012
Last modified: September 18, 2019
This is version 64 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 2
    Human chromosome 2: entries, gene names and cross-references to MIM
  2. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
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