UniProtKB - P0DI19 (PHF5A_ARATH)
Protein
PHD finger-like domain-containing protein 5A
Gene
At2g30000
Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Names & Taxonomyi
Protein namesi | Recommended name: PHD finger-like domain-containing protein 5A |
Gene namesi | Ordered Locus Names:At2g30000 ORF Names:F23F1.8 |
Organismi | Arabidopsis thaliana (Mouse-ear cress) |
Taxonomic identifieri | 3702 [NCBI] |
Taxonomic lineagei | Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliopsida › eudicotyledons › Gunneridae › Pentapetalae › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis |
Proteomesi |
|
Organism-specific databases
Araporti | AT2G30000 |
Subcellular locationi
Nucleus
- precatalytic spliceosome Source: GO_Central
- U12-type spliceosomal complex Source: GO_Central
- U2 snRNP Source: GO_Central
PTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
ChainiPRO_0000417452 | 1 – 110 | PHD finger-like domain-containing protein 5AAdd BLAST | 110 |
Proteomic databases
PaxDbi | P0DI19 |
PRIDEi | P0DI19 |
ProteomicsDBi | 234998 |
Expressioni
Gene expression databases
ExpressionAtlasi | P0DI19, baseline and differential |
Genevisiblei | P0DI19, AT |
Family & Domainsi
Sequence similaritiesi
Belongs to the PHF5 family.Curated
Phylogenomic databases
eggNOGi | KOG1705, Eukaryota |
HOGENOMi | CLU_110369_2_0_1 |
InParanoidi | P0DI19 |
OMAi | CIICGAP |
OrthoDBi | 1477492at2759 |
PhylomeDBi | P0DI19 |
Family and domain databases
InterProi | View protein in InterPro IPR005345, PHF5 |
PANTHERi | PTHR13120, PTHR13120, 1 hit |
Pfami | View protein in Pfam PF03660, PHF5, 1 hit |
PIRSFi | PIRSF016468, PHF5, 1 hit |
i Sequence
Sequence statusi: Complete.
P0DI19-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MAKHHPDLIM CRKQPGIAIG RLCEKCDGKC VICDSYVRPC TLVRICDECN
60 70 80 90 100
YGSFQGRCVI CGGVGISDAY YCKECTQQEK DRDGCPKIVN LGSAKTDLFY
110
ERKKYGFKKR
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AC004680 Genomic DNA Translation: AAC31852.1 CP002685 Genomic DNA Translation: AEC08334.1 AK118482 mRNA Translation: BAC43086.1 BT004694 mRNA Translation: AAO42940.1 AY087478 mRNA Translation: AAM65022.1 |
PIRi | T02485 |
RefSeqi | NP_001077473.1, NM_001084004.1 NP_001184928.1, NM_001197999.1 NP_001318938.1, NM_001331682.1 NP_001321285.1, NM_001331684.1 NP_001321286.1, NM_001331683.1 NP_563782.1, NM_100591.4 NP_565691.1, NM_128555.4 |
Genome annotation databases
EnsemblPlantsi | AT1G07170.1; AT1G07170.1; AT1G07170 AT1G07170.2; AT1G07170.2; AT1G07170 AT1G07170.3; AT1G07170.3; AT1G07170 AT1G07170.4; AT1G07170.4; AT1G07170 AT1G07170.5; AT1G07170.5; AT1G07170 AT1G07170.6; AT1G07170.6; AT1G07170 AT2G30000.1; AT2G30000.1; AT2G30000 |
GeneIDi | 817551 837228 |
Gramenei | AT1G07170.1; AT1G07170.1; AT1G07170 AT1G07170.2; AT1G07170.2; AT1G07170 AT1G07170.3; AT1G07170.3; AT1G07170 AT1G07170.4; AT1G07170.4; AT1G07170 AT1G07170.5; AT1G07170.5; AT1G07170 AT1G07170.6; AT1G07170.6; AT1G07170 AT2G30000.1; AT2G30000.1; AT2G30000 |
KEGGi | ath:AT1G07170 ath:AT2G30000 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AC004680 Genomic DNA Translation: AAC31852.1 CP002685 Genomic DNA Translation: AEC08334.1 AK118482 mRNA Translation: BAC43086.1 BT004694 mRNA Translation: AAO42940.1 AY087478 mRNA Translation: AAM65022.1 |
PIRi | T02485 |
RefSeqi | NP_001077473.1, NM_001084004.1 NP_001184928.1, NM_001197999.1 NP_001318938.1, NM_001331682.1 NP_001321285.1, NM_001331684.1 NP_001321286.1, NM_001331683.1 NP_563782.1, NM_100591.4 NP_565691.1, NM_128555.4 |
3D structure databases
SMRi | P0DI19 |
ModBasei | Search... |
Protein-protein interaction databases
STRINGi | 3702.AT2G30000.1 |
Proteomic databases
PaxDbi | P0DI19 |
PRIDEi | P0DI19 |
ProteomicsDBi | 234998 |
Genome annotation databases
EnsemblPlantsi | AT1G07170.1; AT1G07170.1; AT1G07170 AT1G07170.2; AT1G07170.2; AT1G07170 AT1G07170.3; AT1G07170.3; AT1G07170 AT1G07170.4; AT1G07170.4; AT1G07170 AT1G07170.5; AT1G07170.5; AT1G07170 AT1G07170.6; AT1G07170.6; AT1G07170 AT2G30000.1; AT2G30000.1; AT2G30000 |
GeneIDi | 817551 837228 |
Gramenei | AT1G07170.1; AT1G07170.1; AT1G07170 AT1G07170.2; AT1G07170.2; AT1G07170 AT1G07170.3; AT1G07170.3; AT1G07170 AT1G07170.4; AT1G07170.4; AT1G07170 AT1G07170.5; AT1G07170.5; AT1G07170 AT1G07170.6; AT1G07170.6; AT1G07170 AT2G30000.1; AT2G30000.1; AT2G30000 |
KEGGi | ath:AT1G07170 ath:AT2G30000 |
Organism-specific databases
Araporti | AT2G30000 |
Phylogenomic databases
eggNOGi | KOG1705, Eukaryota |
HOGENOMi | CLU_110369_2_0_1 |
InParanoidi | P0DI19 |
OMAi | CIICGAP |
OrthoDBi | 1477492at2759 |
PhylomeDBi | P0DI19 |
Miscellaneous databases
PROi | PR:P0DI19 |
Gene expression databases
ExpressionAtlasi | P0DI19, baseline and differential |
Genevisiblei | P0DI19, AT |
Family and domain databases
InterProi | View protein in InterPro IPR005345, PHF5 |
PANTHERi | PTHR13120, PTHR13120, 1 hit |
Pfami | View protein in Pfam PF03660, PHF5, 1 hit |
PIRSFi | PIRSF016468, PHF5, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | PHF5A_ARATH | |
Accessioni | P0DI19Primary (citable) accession number: P0DI19 Secondary accession number(s): O80873 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | May 16, 2012 |
Last sequence update: | May 16, 2012 | |
Last modified: | December 2, 2020 | |
This is version 47 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Plant Protein Annotation Program |
Miscellaneousi
Keywords - Technical termi
Reference proteomeDocuments
- Arabidopsis thaliana
Arabidopsis thaliana: entries and gene names - SIMILARITY comments
Index of protein domains and families