Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Entry version 42 (08 May 2019)
Sequence version 1 (21 Mar 2012)
Previous versions | rss
Other tutorials and videosHelp videoFeedback
Protein

F-box/kelch-repeat protein At1g25150

Gene

At1g25150

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
F-box/kelch-repeat protein At1g25150
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:At1g25150
ORF Names:F4F7.43, F5A9.4
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 1

Organism-specific databases

Arabidopsis Information Portal

More...
Araporti
AT1G25150

The Arabidopsis Information Resource

More...
TAIRi
locus:6530298149 AT1G25150

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00004159151 – 433F-box/kelch-repeat protein At1g25150Add BLAST433

Proteomic databases

PRoteomics IDEntifications database

More...
PRIDEi
P0DI05

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
P0DI05 baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
P0DI05 AT

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini23 – 71F-boxAdd BLAST49
<p>This subsection of the ‘Family and Domains’ section indicates the positions and types of repeated sequence motifs or repeated domains within the protein.<p><a href='/help/repeat' target='_top'>More...</a></p>Repeati170 – 216Kelch 1Add BLAST47
Repeati286 – 337Kelch 2Add BLAST52

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Domaini

Kelch repeat, Repeat

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG410JURJ Eukaryota
ENOG41106ME LUCA

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
P0DI05

Database of Orthologous Groups

More...
OrthoDBi
634455at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
P0DI05

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR006527 F-box-assoc_dom_typ1
IPR017451 F-box-assoc_interact_dom
IPR036047 F-box-like_dom_sf
IPR001810 F-box_dom
IPR011043 Gal_Oxase/kelch_b-propeller

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00646 F-box, 1 hit
PF07734 FBA_1, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF50965 SSF50965, 1 hit
SSF81383 SSF81383, 1 hit

TIGRFAMs; a protein family database

More...
TIGRFAMsi
TIGR01640 F_box_assoc_1, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

P0DI05-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MRRRRCDLQP KRTRMCDLQP KRTSMCDLPP KLVGEKILTR IPITSLRAVR
60 70 80 90 100
STCKLWNALT KDRVLGKAAA QFLGFMTMDS KVCSVRFHLR RSKEEEEDTM
110 120 130 140 150
DLSIKQVDLL NQVEISRVYH CDGLLLCVAK DNSRVVVWNP YLGQTRWIRP
160 170 180 190 200
RTESNIGDSY ALGYDINRNH KILRMVQTRN VSVYRYEIYD LRSNSWRVLE
210 220 230 240 250
VTPNGEMDPN HPLYGVSVKG NTYFFAHEDS SSGEIDEDGD IIDLEDFLLC
260 270 280 290 300
FDFTTETFGL RLPLPFHSTI DATVTLSCVR DQQLAVLYHN EGLHSDDRFT
310 320 330 340 350
TVEFWVTTSI EPNSVSWSKF LTVDMRPLAL TGVRFDNDMG ATFFIDEDEK
360 370 380 390 400
VAVVFDLDGY LSTESARYHT AFISGKDGFF KPVTLGVAPN VGEPCPRTGH
410 420 430
IPTTYRPPLV CSSTYLPSLV QVNQQRKRKE RHV
Length:433
Mass (Da):49,644
Last modified:March 21, 2012 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iEE6FB95060482C85
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
F4IAV6F4IAV6_ARATH
F-box associated ubiquitination eff...
At1g25141, F5A9.4
234Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

<p>This subsection of the ‘Sequence’ section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence AAG03130 differs from that shown. Reason: Erroneous gene model prediction. The predicted gene has been split into 2 genes: At1g25145 and At1g25150.Curated
The sequence AAG40091 differs from that shown. Reason: Erroneous gene model prediction. The predicted gene has been split into 2 genes: At1g25145 and At1g25150.Curated

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AC004133 Genomic DNA Translation: AAG03130.1 Sequence problems.
AC079374 Genomic DNA Translation: AAG40091.1 Sequence problems.
CP002684 Genomic DNA Translation: AEE30583.1
CP002684 Genomic DNA Translation: ANM60084.1

NCBI Reference Sequences

More...
RefSeqi
NP_001117347.1, NM_001123875.2
NP_001117348.1, NM_001123876.1
NP_001117350.1, NM_001123878.4
NP_001117352.1, NM_001123880.1
NP_001185091.1, NM_001198162.2
NP_001319077.1, NM_001332666.1

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT1G24800.1; AT1G24800.1; AT1G24800
AT1G24881.1; AT1G24881.1; AT1G24881
AT1G25055.1; AT1G25055.1; AT1G25055
AT1G25150.1; AT1G25150.1; AT1G25150
AT1G25150.2; AT1G25150.2; AT1G25150
AT1G25211.1; AT1G25211.1; AT1G25211

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
10723103
6240216
6241002
6241166
6241255

Gramene; a comparative resource for plants

More...
Gramenei
AT1G24800.1; AT1G24800.1; AT1G24800
AT1G24881.1; AT1G24881.1; AT1G24881
AT1G25055.1; AT1G25055.1; AT1G25055
AT1G25150.1; AT1G25150.1; AT1G25150
AT1G25150.2; AT1G25150.2; AT1G25150
AT1G25211.1; AT1G25211.1; AT1G25211

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT1G24800
ath:AT1G24881
ath:AT1G25055
ath:AT1G25150
ath:AT1G25211

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC004133 Genomic DNA Translation: AAG03130.1 Sequence problems.
AC079374 Genomic DNA Translation: AAG40091.1 Sequence problems.
CP002684 Genomic DNA Translation: AEE30583.1
CP002684 Genomic DNA Translation: ANM60084.1
RefSeqiNP_001117347.1, NM_001123875.2
NP_001117348.1, NM_001123876.1
NP_001117350.1, NM_001123878.4
NP_001117352.1, NM_001123880.1
NP_001185091.1, NM_001198162.2
NP_001319077.1, NM_001332666.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Proteomic databases

PRIDEiP0DI05

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G24800.1; AT1G24800.1; AT1G24800
AT1G24881.1; AT1G24881.1; AT1G24881
AT1G25055.1; AT1G25055.1; AT1G25055
AT1G25150.1; AT1G25150.1; AT1G25150
AT1G25150.2; AT1G25150.2; AT1G25150
AT1G25211.1; AT1G25211.1; AT1G25211
GeneIDi10723103
6240216
6241002
6241166
6241255
GrameneiAT1G24800.1; AT1G24800.1; AT1G24800
AT1G24881.1; AT1G24881.1; AT1G24881
AT1G25055.1; AT1G25055.1; AT1G25055
AT1G25150.1; AT1G25150.1; AT1G25150
AT1G25150.2; AT1G25150.2; AT1G25150
AT1G25211.1; AT1G25211.1; AT1G25211
KEGGiath:AT1G24800
ath:AT1G24881
ath:AT1G25055
ath:AT1G25150
ath:AT1G25211

Organism-specific databases

AraportiAT1G25150
TAIRilocus:6530298149 AT1G25150

Phylogenomic databases

eggNOGiENOG410JURJ Eukaryota
ENOG41106ME LUCA
InParanoidiP0DI05
OrthoDBi634455at2759
PhylomeDBiP0DI05

Miscellaneous databases

Protein Ontology

More...
PROi
PR:P0DI05

Gene expression databases

ExpressionAtlasiP0DI05 baseline and differential
GenevisibleiP0DI05 AT

Family and domain databases

InterProiView protein in InterPro
IPR006527 F-box-assoc_dom_typ1
IPR017451 F-box-assoc_interact_dom
IPR036047 F-box-like_dom_sf
IPR001810 F-box_dom
IPR011043 Gal_Oxase/kelch_b-propeller
PfamiView protein in Pfam
PF00646 F-box, 1 hit
PF07734 FBA_1, 1 hit
SUPFAMiSSF50965 SSF50965, 1 hit
SSF81383 SSF81383, 1 hit
TIGRFAMsiTIGR01640 F_box_assoc_1, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiFBK13_ARATH
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: P0DI05
Secondary accession number(s): Q0WR04
, Q56X62, Q56XG9, Q7GAV1, Q8GRJ5, Q8RXU7, Q9FE36, Q9FXK3, Q9FXK7
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 21, 2012
Last sequence update: March 21, 2012
Last modified: May 8, 2019
This is version 42 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again