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Entry version 45 (26 Feb 2020)
Sequence version 1 (28 Jun 2011)
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Protein

Chromatin-remodeling ATPase INO80

Gene

INO80

Organism
Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (Filobasidiella neoformans)
Status
Reviewed-Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

ATPase component of the INO80 complex which remodels chromatin by shifting nucleosomes and is involved in DNA repair.PROSITE-ProRule annotation

<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section describes a region in the protein which binds nucleotide phosphates. It always involves more than one amino acid and includes all residues involved in nucleotide-binding.<p><a href='/help/np_bind' target='_top'>More...</a></p>Nucleotide bindingi896 – 903ATPPROSITE-ProRule annotation8

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionActivator, DNA-binding, Hydrolase
Biological processDNA damage, DNA repair, Transcription, Transcription regulation
LigandATP-binding, Nucleotide-binding

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Chromatin-remodeling ATPase INO80By similarity (EC:3.6.4.-By similarity)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:INO80
Ordered Locus Names:CNBD0390
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiCryptococcus neoformans var. neoformans serotype D (strain B-3501A) (Filobasidiella neoformans)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri283643 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaFungiDikaryaBasidiomycotaAgaricomycotinaTremellomycetesTremellalesCryptococcaceaeCryptococcusCryptococcus neoformans species complex
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000001435 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componentsi: Chromosome 4, Unassembled WGS sequence

Organism-specific databases

Eukaryotic Pathogen Database Resources

More...
EuPathDBi
FungiDB:CNBD0390

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00004101131 – 1765Chromatin-remodeling ATPase INO80Add BLAST1765

Proteomic databases

PRoteomics IDEntifications database

More...
PRIDEi
P0CO17

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction%5Fsection">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function%5Fsection">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Component of the INO80 chromatin-remodeling complex.

PROSITE-ProRule annotation

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
P0CO17

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini629 – 759DBINOPROSITE-ProRule annotationAdd BLAST131
Domaini883 – 1055Helicase ATP-bindingPROSITE-ProRule annotationAdd BLAST173
Domaini1457 – 1607Helicase C-terminalPROSITE-ProRule annotationAdd BLAST151

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and domains' section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili702 – 745Sequence analysisAdd BLAST44

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a short (usually not more than 20 amino acids) conserved sequence motif of biological significance.<p><a href='/help/motif' target='_top'>More...</a></p>Motifi1006 – 1009DEAQ box4

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi1672 – 1745Ala-richAdd BLAST74

<p>This subsection of the 'Family and domains' section provides general information on the biological role of a domain. The term 'domain' is intended here in its wide acceptation, it may be a structural domain, a transmembrane region or a functional domain. Several domains are described in this subsection.<p><a href='/help/domain_cc' target='_top'>More...</a></p>Domaini

The DBINO region is involved in binding to DNA.By similarity

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the SNF2/RAD54 helicase family.Curated

Keywords - Domaini

Coiled coil

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG0388 Eukaryota
ENOG410XP0A LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_002244_0_0_1

KEGG Orthology (KO)

More...
KOi
K11665

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
3.40.50.10810, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR020838 DBINO
IPR014001 Helicase_ATP-bd
IPR001650 Helicase_C
IPR031047 Ino80
IPR027417 P-loop_NTPase
IPR038718 SNF2-like_sf
IPR000330 SNF2_N

The PANTHER Classification System

More...
PANTHERi
PTHR45685:SF2 PTHR45685:SF2, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF13892 DBINO, 1 hit
PF00271 Helicase_C, 1 hit
PF00176 SNF2_N, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00487 DEXDc, 1 hit
SM00490 HELICc, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF52540 SSF52540, 2 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51413 DBINO, 1 hit
PS51192 HELICASE_ATP_BIND_1, 1 hit
PS51194 HELICASE_CTER, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

P0CO17-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MGAMDDRRYS YPPPRTSYVQ PSTHPSPTAS DYRYRSPVLP QHPPTHHSPS
60 70 80 90 100
SYSASLYGQP KEDPAIAYAR MREEMRTAEE ARREAEALEY RRKRDMEFAA
110 120 130 140 150
RRPGSELMDD PRRIPHSSFP RSQMYGPSAD QSRVMPSRNG KDYISEPPSP
160 170 180 190 200
SELYPTDEDT ERLPIDRYRR DIDVPPLPRQ LPPPPSEIGR MADRARSPSA
210 220 230 240 250
PIAPPLLKVV RKRTKVIRPN DFLVGNEDVW EDGLIRYQSK REDEVRAIAQ
260 270 280 290 300
WAASCQVRNG VGEPSLPQTQ DESIKVRKIN GDIATPTNKK KRKSRKLNLD
310 320 330 340 350
DELLGLASSP PGSPNAAAEA EKSESKHHIY GMNGPIDPAN PPSPSTIVYP
360 370 380 390 400
SGLTRAEVIA KCEAGDVEGL TEDDVKAVQD EMWMREKAAQ AAENGGVLPT
410 420 430 440 450
NKDGTVRRKP GPAKGWRKIR GIDKKKETTP GKAQSTTAGS VAGSVADEEA
460 470 480 490 500
EADIAALLDD SIAKKGKKVK RRKLEEPGAE SPRFADAEDE YNEHRPSDSV
510 520 530 540 550
LLDEIEDEHS RAGSVGESNA LDTLPAASAP PKKKNSKTKE PGVGKGRWTR
560 570 580 590 600
PTKPEKELVK KAEALASRTS KASLAGPSDD TFGVGPGPAE EVQEEIKHEY
610 620 630 640 650
APNTHDPRGV SENEAKIRHE LVEDLQKQAW SNIVRDVPRI YRVFQGYDQS
660 670 680 690 700
MKQIAQRRAQ ACVRNAFGQR NQKTMQRQSG KVNKEGAAKA KRIVKELAAF
710 720 730 740 750
WRKNEKDEVI ARKKAEREAL ERAKAEEEAR ETKRQSRKLN FLLTQTELYS
760 770 780 790 800
HFIGKKIKTK EAEAAEGMDV EEEEKRGMEE IAIGEDGEPL PDLDYDEDDE
810 820 830 840 850
ENLRKHAARG AQAAIQAARD KARAFDDSIV GRGAPLPGDD TMDGDELNFQ
860 870 880 890 900
NPSLGENSVT ITQPKMLMAQ LKEYQLKGLT WLGNLYEQGI NGILADEMGL
910 920 930 940 950
GKTIQSISLL AYLAEHHNLW GPFLVIAPAS TLHNWQQELA RFVPRLKALP
960 970 980 990 1000
YWGSPKDRET LRKIWSRKNQ TFSEDSPFHI LITSYQLAVQ DEKYLQGMKW
1010 1020 1030 1040 1050
QYMILDEAQA IKSSSSARWK SLLSLHCRNR LLLTGTPIQN SMHELWALLH
1060 1070 1080 1090 1100
FIMPQLFDSH EEFAEWFSKD IESSSGGVTG NLKPEQLKRL HMILKPFMLR
1110 1120 1130 1140 1150
RVKKHVQKEL GDKIEIDLLV DLSQRQREIY KALRQRVSIT DLLATAENNT
1160 1170 1180 1190 1200
DNGNPKNMRS LVNLVMQFRK VCNHPDLFER ADVVSPFVFG EFSQSGNLAR
1210 1220 1230 1240 1250
EGDGMYLPDS ARNAIEVQIP RILWTDGGKL DIPGEQSLAG SDTKILQNLL
1260 1270 1280 1290 1300
NIWTPEWINE RTKCADAEFG FVKLVGSSPG ETSRSAKSPV LVQLLEGAEK
1310 1320 1330 1340 1350
ERRWTEEGRF VDDSEFAASV KKGFRVPSVI PVLTQPGQVS LREISRRVWD
1360 1370 1380 1390 1400
ESYLSRDDAR CIGDYAIAPI VKPIASNRSF LNAQDRILNQ PLAHSTLYGL
1410 1420 1430 1440 1450
APSELHDPLA AEQFSRIAPS VPLTGLIPSS ASSQTPVSPL HIPPTKRLIV
1460 1470 1480 1490 1500
DSAKLARLDS LLRELKAGGH RVLLYFQMTK MMDLIEEYLI FRQYKYLRLD
1510 1520 1530 1540 1550
GSSPIAERRD MVTSWQTNPD IFVFCLSTRA GGLGINLTAA DTVIFYDHDW
1560 1570 1580 1590 1600
NPSSDAQAMD RAHRVGQTKQ VTVYRLVARG TIEERILQMA RGKKDIQDVV
1610 1620 1630 1640 1650
VGTKSVSDVA KPSEIVSLFM DDEELAESVA KRKQAEAHGY IAPTIIPNGR
1660 1670 1680 1690 1700
RSQFGDGLVL DDGEGDDGFF NAAAAARANA EEEEGLGAEE ESKGKGKAKA
1710 1720 1730 1740 1750
AAAVTFPVPG EKRSHKKGMG KKAQAAAAAA ALERVIAGNE EPLAASKPPA
1760
KKKVKIALGP DGLPL
Length:1,765
Mass (Da):196,403
Last modified:June 28, 2011 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iC5E120034EEC0A86
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AAEY01000019 Genomic DNA Translation: EAL21342.1

NCBI Reference Sequences

More...
RefSeqi
XP_775989.1, XM_770896.1

Genome annotation databases

Ensembl fungal genome annotation project

More...
EnsemblFungii
AAW43182; AAW43182; CND06010
EAL21342; EAL21342; CNBD0390

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
4935414

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
cnb:CNBD0390

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AAEY01000019 Genomic DNA Translation: EAL21342.1
RefSeqiXP_775989.1, XM_770896.1

3D structure databases

SMRiP0CO17
ModBaseiSearch...

Proteomic databases

PRIDEiP0CO17

Genome annotation databases

EnsemblFungiiAAW43182; AAW43182; CND06010
EAL21342; EAL21342; CNBD0390
GeneIDi4935414
KEGGicnb:CNBD0390

Organism-specific databases

EuPathDBiFungiDB:CNBD0390

Phylogenomic databases

eggNOGiKOG0388 Eukaryota
ENOG410XP0A LUCA
HOGENOMiCLU_002244_0_0_1
KOiK11665

Family and domain databases

Gene3Di3.40.50.10810, 1 hit
InterProiView protein in InterPro
IPR020838 DBINO
IPR014001 Helicase_ATP-bd
IPR001650 Helicase_C
IPR031047 Ino80
IPR027417 P-loop_NTPase
IPR038718 SNF2-like_sf
IPR000330 SNF2_N
PANTHERiPTHR45685:SF2 PTHR45685:SF2, 1 hit
PfamiView protein in Pfam
PF13892 DBINO, 1 hit
PF00271 Helicase_C, 1 hit
PF00176 SNF2_N, 1 hit
SMARTiView protein in SMART
SM00487 DEXDc, 1 hit
SM00490 HELICc, 1 hit
SUPFAMiSSF52540 SSF52540, 2 hits
PROSITEiView protein in PROSITE
PS51413 DBINO, 1 hit
PS51192 HELICASE_ATP_BIND_1, 1 hit
PS51194 HELICASE_CTER, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiINO80_CRYNB
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: P0CO17
Secondary accession number(s): Q55US0, Q5KHM0
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 28, 2011
Last sequence update: June 28, 2011
Last modified: February 26, 2020
This is version 45 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Documents

  1. SIMILARITY comments
    Index of protein domains and families
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