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Entry version 76 (16 Oct 2019)
Sequence version 1 (02 Mar 2010)
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Protein

ATP-dependent RNA helicase DEAH11, chloroplastic

Gene

At4g01020

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section indicates at which position the protein binds a given metal ion. The nature of the metal is indicated in the ‘Description’ field.<p><a href='/help/metal' target='_top'>More...</a></p>Metal bindingi1561Zinc 1PROSITE-ProRule annotation1
Metal bindingi1564Zinc 1PROSITE-ProRule annotation1
Metal bindingi1577Zinc 2PROSITE-ProRule annotation1
Metal bindingi1579Zinc 2; via pros nitrogenPROSITE-ProRule annotation1
Metal bindingi1582Zinc 1PROSITE-ProRule annotation1
Metal bindingi1585Zinc 1PROSITE-ProRule annotation1
Metal bindingi1604Zinc 2PROSITE-ProRule annotation1
Metal bindingi1609Zinc 2PROSITE-ProRule annotation1
Metal bindingi1649Zinc 3PROSITE-ProRule annotation1
Metal bindingi1654Zinc 3PROSITE-ProRule annotation1
Metal bindingi1672Zinc 3PROSITE-ProRule annotation1
Metal bindingi1675Zinc 3PROSITE-ProRule annotation1
Metal bindingi1680Zinc 4PROSITE-ProRule annotation1
Metal bindingi1683Zinc 4PROSITE-ProRule annotation1
Metal bindingi1688Zinc 4; via tele nitrogenPROSITE-ProRule annotation1
Metal bindingi1693Zinc 4PROSITE-ProRule annotation1
Metal bindingi1719Zinc 5PROSITE-ProRule annotation1
Metal bindingi1722Zinc 5PROSITE-ProRule annotation1
<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section is used for enzymes and indicates the residues directly involved in catalysis.<p><a href='/help/act_site' target='_top'>More...</a></p>Active sitei1732PROSITE-ProRule annotation1
Metal bindingi1737Zinc 5PROSITE-ProRule annotation1
Metal bindingi1739Zinc 5PROSITE-ProRule annotation1

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section describes a region in the protein which binds nucleotide phosphates. It always involves more than one amino acid and includes all residues involved in nucleotide-binding.<p><a href='/help/np_bind' target='_top'>More...</a></p>Nucleotide bindingi326 – 333ATPPROSITE-ProRule annotation8
<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section specifies the position(s) and type(s) of zinc fingers within the protein.<p><a href='/help/zn_fing' target='_top'>More...</a></p>Zinc fingeri1561 – 1609RING-type 1PROSITE-ProRule annotationAdd BLAST49
Zinc fingeri1628 – 1693IBR-typePROSITE-ProRule annotationAdd BLAST66
Zinc fingeri1719 – 1747RING-type 2; atypicalPROSITE-ProRule annotationAdd BLAST29

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionHelicase, Hydrolase, Transferase
Biological processUbl conjugation pathway
LigandATP-binding, Metal-binding, Nucleotide-binding, Zinc

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
ATP-dependent RNA helicase DEAH11, chloroplastic (EC:3.6.4.13)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:At4g01020Imported
ORF Names:F3I3.40Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 4

Organism-specific databases

Arabidopsis Information Portal

More...
Araporti
AT4G01020

The Arabidopsis Information Resource

More...
TAIRi
locus:2125211 AT4G01020

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

Chloroplast, Plastid

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a transit peptide.<p><a href='/help/transit' target='_top'>More...</a></p>Transit peptidei1 – 33ChloroplastSequence analysisAdd BLAST33
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_000039172034 – 1787ATP-dependent RNA helicase DEAH11, chloroplasticAdd BLAST1754

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
P0CE10

PRoteomics IDEntifications database

More...
PRIDEi
P0CE10

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
P0CE10 baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
P0CE10 AT

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
3702.AT4G01020.1

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
P0CE10

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini313 – 477Helicase ATP-bindingPROSITE-ProRule annotationAdd BLAST165
Domaini507 – 673Helicase C-terminalPROSITE-ProRule annotationAdd BLAST167

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1557 – 1764TRIAD supradomainPROSITE-ProRule annotationAdd BLAST208

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a short (usually not more than 20 amino acids) conserved sequence motif of biological significance.<p><a href='/help/motif' target='_top'>More...</a></p>Motifi424 – 427DEAH boxPROSITE-ProRule annotation4

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri1561 – 1609RING-type 1PROSITE-ProRule annotationAdd BLAST49
Zinc fingeri1628 – 1693IBR-typePROSITE-ProRule annotationAdd BLAST66
Zinc fingeri1719 – 1747RING-type 2; atypicalPROSITE-ProRule annotationAdd BLAST29

Keywords - Domaini

Repeat, Transit peptide, Zinc-finger

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG0922 Eukaryota
KOG1812 Eukaryota
COG1643 LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000084497

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
P0CE10

KEGG Orthology (KO)

More...
KOi
K12818

Identification of Orthologs from Complete Genome Data

More...
OMAi
ATESIVC

Database of Orthologous Groups

More...
OrthoDBi
28987at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
P0CE10

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
1.10.10.2130, 1 hit
3.30.40.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR011545 DEAD/DEAH_box_helicase_dom
IPR042035 DEAH_win-hel_dom
IPR002464 DNA/RNA_helicase_DEAH_CS
IPR011709 DUF1605
IPR007502 Helicase-assoc_dom
IPR014001 Helicase_ATP-bd
IPR001650 Helicase_C
IPR002867 IBR_dom
IPR027417 P-loop_NTPase
IPR027370 Znf-RING_LisH
IPR013087 Znf_C2H2_type
IPR001841 Znf_RING
IPR013083 Znf_RING/FYVE/PHD
IPR017907 Znf_RING_CS

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00270 DEAD, 1 hit
PF04408 HA2, 1 hit
PF00271 Helicase_C, 1 hit
PF01485 IBR, 1 hit
PF07717 OB_NTP_bind, 1 hit
PF13445 zf-RING_UBOX, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00487 DEXDc, 1 hit
SM00847 HA2, 1 hit
SM00490 HELICc, 1 hit
SM00647 IBR, 2 hits

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF52540 SSF52540, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS00690 DEAH_ATP_HELICASE, 1 hit
PS51192 HELICASE_ATP_BIND_1, 1 hit
PS51194 HELICASE_CTER, 1 hit
PS51873 TRIAD, 1 hit
PS00518 ZF_RING_1, 1 hit
PS50089 ZF_RING_2, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is in its mature form or if it represents the precursor.<p><a href='/help/sequence_processing' target='_top'>More...</a></p>Sequence processingi: The displayed sequence is further processed into a mature form.

P0CE10-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MRNSFPPSDG GRSTTDRRQQ SFPSSSTNRY NSRSAQSSPP LNHCTTWNQQ
60 70 80 90 100
HSQYHNTNFP PNYRRDRAPS SGFSPPVTRA RPNFIVQLLH PAAANSDTKL
110 120 130 140 150
SKKQEIESIA LLCEIPEESV HVPQFGCIAA SFSFRQWVDA RSAVVALWDY
160 170 180 190 200
RLQGRHDFVP ELIPNVVVPS DMDELKDRLR DLFSSHVLSL MENGQGVKKV
210 220 230 240 250
RMEIDDKSRQ VASFSSKRGL KFEVFEKKKA LEAERDLVVN RLDEFNNAMK
260 270 280 290 300
SILRYLIGQD GYEFDVDDED DEDVAVFSLE GAYDWRRIHY LILRECRRLE
310 320 330 340 350
DGLPIYAYRR QILKKIHCEQ IMVLIGETGS GKSTQLVQFL ADSGVAASES
360 370 380 390 400
IVCTQPRKIA AMTLTDRVRE ESSGCYEENT VSCTPTFSST EEISSKVVYM
410 420 430 440 450
TDNCLLQHYM KDRSLSGISC VIIDEAHERS LNTDLLLALL RKLLSRRIDL
460 470 480 490 500
RLVIMSATAD ANQLSQYLFD CGILHVNGRN FPVEIVYSPS GTEENSVVGR
510 520 530 540 550
IASYAGDVVK MAVEIHKTEK EGTILAFLTS QAEVEWACER FVAPSAIALP
560 570 580 590 600
LHGKLSFEEQ FMVFQNYPGR RKVIFATNIA ETSLTIPGVK YVIDSGMVKE
610 620 630 640 650
SKYEPRTGMS ILKVCQVSQS SARQRAGRAG RTEPGRCYRL YSKTDFDSMN
660 670 680 690 700
LNQEPEIRRV HLGVALLRML ALGIDNIAAF EFVDAPVPEA IAMAIQNLVQ
710 720 730 740 750
LGAVVEKNGV LELTQEGHCL VKLGLEPKLG KLILGCFRHR MGKEGIVLAA
760 770 780 790 800
VMANASSIFC RVGNFDDKMK ADRLKVQFCN DNGDLFTLLS VYKEWASLPR
810 820 830 840 850
DRRNKWCWEN SLNAKSMRRC EDTVKELEIC IERELTLVSP SYWVWNPNEG
860 870 880 890 900
TKHDKYLKMV ILASLAENVA MYTGYDQLGY EVALTSQQVQ LHPSCSLLAF
910 920 930 940 950
GQKPSWVVFG ELLSIVDQYL VCVTAFDFEA LYMLDPPPPF DASQMDERRL
960 970 980 990 1000
RVKKVVGCSS TVLKRFCGKS NRSLLSIVSR ARSLCSDERI GIQVDVDQNE
1010 1020 1030 1040 1050
IRLYASPLDM EKVSALVNDA LECEKKWMRN ECLEKYLFHG RGQIPIALFG
1060 1070 1080 1090 1100
SGAQIKHLEV DQRFLTVDVH YYGDDVVDDR ELLTFLEKKI DGCICSIYKF
1110 1120 1130 1140 1150
AANKQDCDEK EKWGRITFLT PESAMKATEI QKFDFKGSVL KVFPSLSTGG
1160 1170 1180 1190 1200
GIFKMPYFSS VTAKIRWPRK ESSGRGCLKC PSGDIHSILG DITSLEIGTN
1210 1220 1230 1240 1250
YVHIQRDQLS NDSILISGLG DLSEAEVLDV LEFRTQRRDL NFFIFRKKYS
1260 1270 1280 1290 1300
VQCPSPTACE EELHKRIFAR MSAKNPEPNC VQVQVFEPKE DNYFMRALIK
1310 1320 1330 1340 1350
FDGRLHLEAA KALQELNGEV LPGCLPWQKI KCEQLFQSSI ICSASIYNTV
1360 1370 1380 1390 1400
KRQLNVLLAR FERQKGGECC LEPTHNGAYR VKITAYATRP VAEMRRELEE
1410 1420 1430 1440 1450
LLRGKPINHP GFTPRVVQHL MSRDGINLMR KIQQETETYI LLDRHNLTVR
1460 1470 1480 1490 1500
ICGTSEKIAK AEQELVQSLM DYHESKQLEI HLRGPEIRPD LMKEVVKRFG
1510 1520 1530 1540 1550
PELQGIKEKV HGVDLKLNTR YHVIQVHGSK EMRQEVQKMV NELAREKSAL
1560 1570 1580 1590 1600
GEKPDEIELE CPICLSEVDD GYSLEGCSHL FCKACLLEQF EASMRNFDAF
1610 1620 1630 1640 1650
PILCSHIDCG APIVVADMRA LLSQEKLDEL ISASLSAFVT SSDGKLRFCS
1660 1670 1680 1690 1700
TPDCPSIYRV AGPQESGEPF ICGACHSETC TRCHLEYHPL ITCERYKKFK
1710 1720 1730 1740 1750
ENPDLSLKDW AKGKDVKECP ICKSTIEKTD GCNHLQCRCG KHICWTCLDV
1760 1770 1780
FTQAEPCYAH LRTIHGGIGL VELGVPEHPV AQPVHRL
Length:1,787
Mass (Da):202,131
Last modified:March 2, 2010 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iEF6319FEC8C196C9
GO

<p>This subsection of the ‘Sequence’ section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence CAB45785 differs from that shown. Reason: Erroneous gene model prediction. The predicted gene At4g01020 has been split into 2 genes: At4g01020 and At4g01026.Curated
The sequence CAB80911 differs from that shown. Reason: Erroneous gene model prediction. The predicted gene At4g01020 has been split into 2 genes: At4g01020 and At4g01026.Curated

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AL080237 Genomic DNA Translation: CAB45785.1 Sequence problems.
AL161491 Genomic DNA Translation: CAB80911.1 Sequence problems.
CP002687 Genomic DNA Translation: AEE81967.1

Protein sequence database of the Protein Information Resource

More...
PIRi
T10542

NCBI Reference Sequences

More...
RefSeqi
NP_567206.1, NM_116330.3

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT4G01020.1; AT4G01020.1; AT4G01020

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
826439

Gramene; a comparative resource for plants

More...
Gramenei
AT4G01020.1; AT4G01020.1; AT4G01020

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT4G01020

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL080237 Genomic DNA Translation: CAB45785.1 Sequence problems.
AL161491 Genomic DNA Translation: CAB80911.1 Sequence problems.
CP002687 Genomic DNA Translation: AEE81967.1
PIRiT10542
RefSeqiNP_567206.1, NM_116330.3

3D structure databases

SMRiP0CE10
ModBaseiSearch...

Protein-protein interaction databases

STRINGi3702.AT4G01020.1

Proteomic databases

PaxDbiP0CE10
PRIDEiP0CE10

Genome annotation databases

EnsemblPlantsiAT4G01020.1; AT4G01020.1; AT4G01020
GeneIDi826439
GrameneiAT4G01020.1; AT4G01020.1; AT4G01020
KEGGiath:AT4G01020

Organism-specific databases

AraportiAT4G01020
TAIRilocus:2125211 AT4G01020

Phylogenomic databases

eggNOGiKOG0922 Eukaryota
KOG1812 Eukaryota
COG1643 LUCA
HOGENOMiHOG000084497
InParanoidiP0CE10
KOiK12818
OMAiATESIVC
OrthoDBi28987at2759
PhylomeDBiP0CE10

Miscellaneous databases

Protein Ontology

More...
PROi
PR:P0CE10

Gene expression databases

ExpressionAtlasiP0CE10 baseline and differential
GenevisibleiP0CE10 AT

Family and domain databases

Gene3Di1.10.10.2130, 1 hit
3.30.40.10, 1 hit
InterProiView protein in InterPro
IPR011545 DEAD/DEAH_box_helicase_dom
IPR042035 DEAH_win-hel_dom
IPR002464 DNA/RNA_helicase_DEAH_CS
IPR011709 DUF1605
IPR007502 Helicase-assoc_dom
IPR014001 Helicase_ATP-bd
IPR001650 Helicase_C
IPR002867 IBR_dom
IPR027417 P-loop_NTPase
IPR027370 Znf-RING_LisH
IPR013087 Znf_C2H2_type
IPR001841 Znf_RING
IPR013083 Znf_RING/FYVE/PHD
IPR017907 Znf_RING_CS
PfamiView protein in Pfam
PF00270 DEAD, 1 hit
PF04408 HA2, 1 hit
PF00271 Helicase_C, 1 hit
PF01485 IBR, 1 hit
PF07717 OB_NTP_bind, 1 hit
PF13445 zf-RING_UBOX, 1 hit
SMARTiView protein in SMART
SM00487 DEXDc, 1 hit
SM00847 HA2, 1 hit
SM00490 HELICc, 1 hit
SM00647 IBR, 2 hits
SUPFAMiSSF52540 SSF52540, 1 hit
PROSITEiView protein in PROSITE
PS00690 DEAH_ATP_HELICASE, 1 hit
PS51192 HELICASE_ATP_BIND_1, 1 hit
PS51194 HELICASE_CTER, 1 hit
PS51873 TRIAD, 1 hit
PS00518 ZF_RING_1, 1 hit
PS50089 ZF_RING_2, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

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ProtoNeti
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MobiDB: a database of protein disorder and mobility annotations

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MobiDBi
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<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiDEAHB_ARATH
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: P0CE10
Secondary accession number(s): Q9SV27
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 2, 2010
Last sequence update: March 2, 2010
Last modified: October 16, 2019
This is version 76 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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