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Entry version 69 (17 Jun 2020)
Sequence version 2 (16 Nov 2011)
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Protein

B3 domain-containing protein REM13

Gene

REM13

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at transcript leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section specifies the position and type of each DNA-binding domain present within the protein.<p><a href='/help/dna_bind' target='_top'>More...</a></p>DNA bindingi7 – 96TF-B3 1PROSITE-ProRule annotationAdd BLAST90
DNA bindingi157 – 253TF-B3 2PROSITE-ProRule annotationAdd BLAST97
DNA bindingi305 – 398TF-B3 3PROSITE-ProRule annotationAdd BLAST94
DNA bindingi474 – 570TF-B3 4PROSITE-ProRule annotationAdd BLAST97
DNA bindingi643 – 738TF-B3 5PROSITE-ProRule annotationAdd BLAST96
DNA bindingi815 – 910TF-B3 6PROSITE-ProRule annotationAdd BLAST96
DNA bindingi940 – 1035TF-B3 7PROSITE-ProRule annotationAdd BLAST96

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
B3 domain-containing protein REM13
Alternative name(s):
Protein REPRODUCTIVE MERISTEM 13
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:REM13
Ordered Locus Names:At2g24650
ORF Names:F25P17.5
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 2

Organism-specific databases

Arabidopsis Information Portal

More...
Araporti
AT2G24650

The Arabidopsis Information Resource

More...
TAIRi
locus:2046668 AT2G24650

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00003751071 – 1045B3 domain-containing protein REM13Add BLAST1045

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
P0CAP5

PRoteomics IDEntifications database

More...
PRIDEi
P0CAP5

ProteomicsDB: a multi-organism proteome resource

More...
ProteomicsDBi
236878

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
P0CAP5 baseline and differential

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
P0CAP5

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi148 – 152Poly-Ser5

Keywords - Domaini

Repeat

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG410JMYQ Eukaryota
ENOG410Z6HB LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_275767_0_0_1

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
P0CAP5

Database of Orthologous Groups

More...
OrthoDBi
246503at2759

Family and domain databases

Conserved Domains Database

More...
CDDi
cd10017 B3_DNA, 7 hits

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
2.40.330.10, 7 hits

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR003340 B3_DNA-bd
IPR015300 DNA-bd_pseudobarrel_sf
IPR039218 REM_fam

The PANTHER Classification System

More...
PANTHERi
PTHR31674 PTHR31674, 9 hits

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF02362 B3, 7 hits

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM01019 B3, 7 hits

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF101936 SSF101936, 7 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50863 B3, 7 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry has 1 described isoform and 6 potential isoforms that are computationally mapped.Show allAlign All

P0CAP5-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MANSRIYPQF FHTLVPSFHT HLMIPEDFFS EYIEGRSVAE LKLDFSDKSW
60 70 80 90 100
EVKLSDRRIT DGWEEFVVAN DFRIGDVVAF RYVGNLVFHV SNLGPNYYEI
110 120 130 140 150
EHNDGESLLR KRLHQVDFSS NNGDVCDSEE LPKEKKAKTN SEEADAVSSS
160 170 180 190 200
SSADKSCFMA IITALDLTTD TLYLPLHFTS ANGLTRKNRE IILTDGGERS
210 220 230 240 250
RVLDLRFDES SGTFYISRGW RNFCDENGQK AGGFFLFKLV GKGETLVLSF
260 270 280 290 300
CPTESINGEE NITREDSKDE CSSLDSLMNI VEKKKYIPKP RGSPYSSYSP
310 320 330 340 350
SHKQFVTFTL PPDYARIGKL SLSAPFVREN GINKPGEICL LDKHGRKWLT
360 370 380 390 400
SLLLDSKGTM SLGKGWKEFV KANSLETGFT LKLIWEETTP VLSLCSPESN
410 420 430 440 450
SDREQEEISK AIEKHSLFID PSNRDKISNN DKEENMSWER KKDHLKSRDS
460 470 480 490 500
TLSSQKQFVT ITITPSSDRL VSLSNDSCLV VVSLLYFDMR LPKVFTRENG
510 520 530 540 550
INKPGRITLL GKDGIKQQTN LLFDKANGAM SLGHGWKDFV KDNGLKTGDS
560 570 580 590 600
FTLKLIWEDQ TPVLSLCPAD CSIDREAGGG RSETNQKKSL PIEPSTCKKI
610 620 630 640 650
RKDVNIKDDN SKEKNDKEES KSVDGERKYL RGTYLTPSSQ KHFVTLTITP
660 670 680 690 700
SSIKKDRLIL SPQFARKNNI DKPGMIYLLD TDGTKWLISL QRDKKGTMSL
710 720 730 740 750
GKGWKEFAEA NDFKLGESFT MELVWEDTTP MLSLLRTEFR SSKANEKESI
760 770 780 790 800
SSEHKTRESS PTIKNRIVTP ALTPEDVKAC KLILPSQFMK KIRTVDKERN
810 820 830 840 850
HLKGRDLNPS CQKQFVTFTI TPTCVGKNRL ILSAQFAREN NINQPGTIYL
860 870 880 890 900
LDTDGRKWLT TVKRDKKGTM SLGKGWKEFA DTKDLKSGDS FTMELIWEDT
910 920 930 940 950
NPVLSLLRTK FSSSKSNKEE SIFLEPKSRD SSSPTIVNRF VTLALTPEDV
960 970 980 990 1000
TACKLILPSQ FMKANGINNK LGKITLLGEN GVEWPGYMLS LDGTLALGNG
1010 1020 1030 1040
WEGFCEANGV KLGQTFTLEF VNEQDTTTTP VLKFSSVETI YKNVN
Length:1,045
Mass (Da):117,805
Last modified:November 16, 2011 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iD42D654A2053CB08
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 6 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A1P8B214A0A1P8B214_ARATH
B3 domain-containing protein REM13
At2g24650, F25P17.5, F25P17_5
952Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A1P8B205A0A1P8B205_ARATH
B3 domain-containing protein REM13
At2g24650, F25P17.5, F25P17_5
1,004Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A1P8B210A0A1P8B210_ARATH
B3 domain-containing protein REM13
At2g24650, F25P17.5, F25P17_5
846Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A1P8B216A0A1P8B216_ARATH
B3 domain-containing protein REM13
At2g24650, F25P17.5, F25P17_5
971Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A1P8B255A0A1P8B255_ARATH
B3 domain-containing protein REM13
At2g24650, F25P17.5, F25P17_5
1,026Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A1P8B219A0A1P8B219_ARATH
B3 domain-containing protein REM13
At2g24650, F25P17.5, F25P17_5
868Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

<p>This subsection of the 'Sequence' section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence AAD23895 differs from that shown. Reason: Erroneous gene model prediction. The predicted gene At2g24650 has been split into 2 genes: At2g24645 and At2g24650.Curated

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AC006954 Genomic DNA Translation: AAD23895.1 Sequence problems.
CP002685 Genomic DNA Translation: AEC07610.1

Protein sequence database of the Protein Information Resource

More...
PIRi
C84639

NCBI Reference Sequences

More...
RefSeqi
NP_180041.5, NM_128026.6

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT2G24650.1; AT2G24650.1; AT2G24650

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
817001

Gramene; a comparative resource for plants

More...
Gramenei
AT2G24650.1; AT2G24650.1; AT2G24650

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT2G24650

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC006954 Genomic DNA Translation: AAD23895.1 Sequence problems.
CP002685 Genomic DNA Translation: AEC07610.1
PIRiC84639
RefSeqiNP_180041.5, NM_128026.6

3D structure databases

SMRiP0CAP5
ModBaseiSearch...

Proteomic databases

PaxDbiP0CAP5
PRIDEiP0CAP5
ProteomicsDBi236878

Genome annotation databases

EnsemblPlantsiAT2G24650.1; AT2G24650.1; AT2G24650
GeneIDi817001
GrameneiAT2G24650.1; AT2G24650.1; AT2G24650
KEGGiath:AT2G24650

Organism-specific databases

AraportiAT2G24650
TAIRilocus:2046668 AT2G24650

Phylogenomic databases

eggNOGiENOG410JMYQ Eukaryota
ENOG410Z6HB LUCA
HOGENOMiCLU_275767_0_0_1
InParanoidiP0CAP5
OrthoDBi246503at2759

Miscellaneous databases

Protein Ontology

More...
PROi
PR:P0CAP5

Gene expression databases

ExpressionAtlasiP0CAP5 baseline and differential

Family and domain databases

CDDicd10017 B3_DNA, 7 hits
Gene3Di2.40.330.10, 7 hits
InterProiView protein in InterPro
IPR003340 B3_DNA-bd
IPR015300 DNA-bd_pseudobarrel_sf
IPR039218 REM_fam
PANTHERiPTHR31674 PTHR31674, 9 hits
PfamiView protein in Pfam
PF02362 B3, 7 hits
SMARTiView protein in SMART
SM01019 B3, 7 hits
SUPFAMiSSF101936 SSF101936, 7 hits
PROSITEiView protein in PROSITE
PS50863 B3, 7 hits

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiREM13_ARATH
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: P0CAP5
Secondary accession number(s): F4IPS4, Q9SJA0
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 26, 2009
Last sequence update: November 16, 2011
Last modified: June 17, 2020
This is version 69 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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