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Protein

Putative pentatricopeptide repeat-containing protein At3g15130

Gene

PCMP-H86

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Recommended name:
Putative pentatricopeptide repeat-containing protein At3g15130
Gene namesi
Name:PCMP-H86
Ordered Locus Names:At3g15130
ORF Names:F4B12.1
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G15130
TAIRilocus:2083631 AT3G15130

Subcellular locationi

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003560911 – 689Putative pentatricopeptide repeat-containing protein At3g15130Add BLAST689

Proteomic databases

PaxDbiP0C898
PRIDEiP0C898

Expressioni

Gene expression databases

ExpressionAtlasiP0C898 baseline and differential
GenevisibleiP0C898 AT

Interactioni

Protein-protein interaction databases

STRINGi3702.AT3G15130.1

Structurei

3D structure databases

ProteinModelPortaliP0C898
SMRiP0C898
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati5 – 39PPR 1Add BLAST35
Repeati40 – 70PPR 2Add BLAST31
Repeati71 – 105PPR 3Add BLAST35
Repeati106 – 140PPR 4Add BLAST35
Repeati141 – 171PPR 5Add BLAST31
Repeati172 – 206PPR 6Add BLAST35
Repeati209 – 243PPR 7Add BLAST35
Repeati246 – 276PPR 8Add BLAST31
Repeati277 – 311PPR 9Add BLAST35
Repeati312 – 342PPR 10Add BLAST31
Repeati347 – 377PPR 11Add BLAST31
Repeati378 – 412PPR 12Add BLAST35
Repeati413 – 448PPR 13Add BLAST36
Repeati449 – 479PPR 14Add BLAST31

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni484 – 559Type E motifAdd BLAST76
Regioni560 – 590Type E(+) motifAdd BLAST31
Regioni592 – 689Type DYW motifAdd BLAST98

Sequence similaritiesi

Belongs to the PPR family. PCMP-H subfamily.Curated

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000237570
InParanoidiP0C898
OMAiVNYVMMS
OrthoDBiEOG093604HI
PhylomeDBiP0C898

Family and domain databases

Gene3Di1.25.40.10, 4 hits
InterProiView protein in InterPro
IPR032867 DYW_dom
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF14432 DYW_deaminase, 1 hit
PF01535 PPR, 3 hits
PF13041 PPR_2, 3 hits
TIGRFAMsiTIGR00756 PPR, 8 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 12 hits

Sequencei

Sequence statusi: Complete.

P0C898-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MIPNQRQNLV SILRVCTRKG LSDQGGQVHC YLLKSGSGLN LITSNYLIDM
60 70 80 90 100
YCKCREPLMA YKVFDSMPER NVVSWSALMS GHVLNGDLKG SLSLFSEMGR
110 120 130 140 150
QGIYPNEFTF STNLKACGLL NALEKGLQIH GFCLKIGFEM MVEVGNSLVD
160 170 180 190 200
MYSKCGRINE AEKVFRRIVD RSLISWNAMI AGFVHAGYGS KALDTFGMMQ
210 220 230 240 250
EANIKERPDE FTLTSLLKAC SSTGMIYAGK QIHGFLVRSG FHCPSSATIT
260 270 280 290 300
GSLVDLYVKC GYLFSARKAF DQIKEKTMIS WSSLILGYAQ EGEFVEAMGL
310 320 330 340 350
FKRLQELNSQ IDSFALSSII GVFADFALLR QGKQMQALAV KLPSGLETSV
360 370 380 390 400
LNSVVDMYLK CGLVDEAEKC FAEMQLKDVI SWTVVITGYG KHGLGKKSVR
410 420 430 440 450
IFYEMLRHNI EPDEVCYLAV LSACSHSGMI KEGEELFSKL LETHGIKPRV
460 470 480 490 500
EHYACVVDLL GRAGRLKEAK HLIDTMPIKP NVGIWQTLLS LCRVHGDIEL
510 520 530 540 550
GKEVGKILLR IDAKNPANYV MMSNLYGQAG YWNEQGNARE LGNIKGLKKE
560 570 580 590 600
AGMSWVEIER EVHFFRSGED SHPLTPVIQE TLKEAERRLR EELGYVYGLK
610 620 630 640 650
HELHDIDDES KEENLRAHSE KLAIGLALAT GGLNQKGKTI RVFKNLRVCV
660 670 680
DCHEFIKGLS KITKIAYVVR DAVRFHSFED GCCSCGDYW
Length:689
Mass (Da):77,041
Last modified:December 16, 2008 - v1
Checksum:iF15488D64CE86CAD
GO

Sequence cautioni

The sequence BAB02568 differs from that shown. Reason: Erroneous gene model prediction. The predicted gene has been split into 2 genes: At3g15130 and At3g15140.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP001299 Genomic DNA Translation: BAB02568.1 Sequence problems.
CP002686 Genomic DNA Translation: AEE75623.1
RefSeqiNP_188131.1, NM_112376.2

Genome annotation databases

EnsemblPlantsiAT3G15130.1; AT3G15130.1; AT3G15130
GeneIDi820744
GrameneiAT3G15130.1; AT3G15130.1; AT3G15130
KEGGiath:AT3G15130

Similar proteinsi

Cross-referencesi

Web resourcesi

Arabidopsis PPR Protein Database

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP001299 Genomic DNA Translation: BAB02568.1 Sequence problems.
CP002686 Genomic DNA Translation: AEE75623.1
RefSeqiNP_188131.1, NM_112376.2

3D structure databases

ProteinModelPortaliP0C898
SMRiP0C898
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT3G15130.1

Proteomic databases

PaxDbiP0C898
PRIDEiP0C898

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G15130.1; AT3G15130.1; AT3G15130
GeneIDi820744
GrameneiAT3G15130.1; AT3G15130.1; AT3G15130
KEGGiath:AT3G15130

Organism-specific databases

AraportiAT3G15130
TAIRilocus:2083631 AT3G15130

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000237570
InParanoidiP0C898
OMAiVNYVMMS
OrthoDBiEOG093604HI
PhylomeDBiP0C898

Miscellaneous databases

PROiPR:P0C898

Gene expression databases

ExpressionAtlasiP0C898 baseline and differential
GenevisibleiP0C898 AT

Family and domain databases

Gene3Di1.25.40.10, 4 hits
InterProiView protein in InterPro
IPR032867 DYW_dom
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF14432 DYW_deaminase, 1 hit
PF01535 PPR, 3 hits
PF13041 PPR_2, 3 hits
TIGRFAMsiTIGR00756 PPR, 8 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 12 hits
ProtoNetiSearch...

Entry informationi

Entry nameiPP232_ARATH
AccessioniPrimary (citable) accession number: P0C898
Secondary accession number(s): Q9LIM1
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 16, 2008
Last sequence update: December 16, 2008
Last modified: May 23, 2018
This is version 61 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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