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Entry version 59 (31 Jul 2019)
Sequence version 1 (10 Jun 2008)
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Protein

Putative DEAH-box ATP-dependent helicase UM11114

Gene

UMAG_11114

Organism
Ustilago maydis (strain 521 / FGSC 9021) (Corn smut fungus)
Status
Reviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section describes a region in the protein which binds nucleotide phosphates. It always involves more than one amino acid and includes all residues involved in nucleotide-binding.<p><a href='/help/np_bind' target='_top'>More...</a></p>Nucleotide bindingi759 – 766ATPPROSITE-ProRule annotation8

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionHelicase, Hydrolase
LigandATP-binding, Nucleotide-binding

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Putative DEAH-box ATP-dependent helicase UM11114 (EC:3.6.4.-)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:UMAG_11114
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiUstilago maydis (strain 521 / FGSC 9021) (Corn smut fungus)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri237631 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaFungiDikaryaBasidiomycotaUstilaginomycotinaUstilaginomycetesUstilaginalesUstilaginaceaeUstilago
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000561 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componentsi: Chromosome 12, Unassembled WGS sequence

Organism-specific databases

Eukaryotic Pathogen Database Resources

More...
EuPathDBi
FungiDB:UMAG_11114

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00003385671 – 1567Putative DEAH-box ATP-dependent helicase UM11114Add BLAST1567

Proteomic databases

PRoteomics IDEntifications database

More...
PRIDEi
P0C7L7

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
5270.UM04112P0

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
P0C7L7

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini746 – 924Helicase ATP-bindingPROSITE-ProRule annotationAdd BLAST179
Domaini1003 – 1184Helicase C-terminalPROSITE-ProRule annotationAdd BLAST182

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a short (usually not more than 20 amino acids) conserved sequence motif of biological significance.<p><a href='/help/motif' target='_top'>More...</a></p>Motifi871 – 874DEAH box4

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi61 – 66Poly-Ser6
Compositional biasi75 – 83Poly-Gly9
Compositional biasi356 – 359Poly-Ser4

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Phylogenomic databases

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000167651

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
P0C7L7

Database of Orthologous Groups

More...
OrthoDBi
278674at2759

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR011545 DEAD/DEAH_box_helicase_dom
IPR002464 DNA/RNA_helicase_DEAH_CS
IPR011709 DUF1605
IPR007502 Helicase-assoc_dom
IPR014001 Helicase_ATP-bd
IPR001650 Helicase_C
IPR027417 P-loop_NTPase

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00270 DEAD, 1 hit
PF04408 HA2, 1 hit
PF00271 Helicase_C, 1 hit
PF07717 OB_NTP_bind, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00487 DEXDc, 1 hit
SM00847 HA2, 1 hit
SM00490 HELICc, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF52540 SSF52540, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS00690 DEAH_ATP_HELICASE, 1 hit
PS51192 HELICASE_ATP_BIND_1, 1 hit
PS51194 HELICASE_CTER, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

P0C7L7-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAPRKKNPAI KSSGTTSSKA SPLPDWVKGG GPKPPPSYTK AAKQQQTQSA
60 70 80 90 100
GNDTAISATG SSSSSSPVAA ASSAGGGGGG GQGQPREMLF PPGSKTPLNM
110 120 130 140 150
LYERVNKLPG WEKPIVEPRR HKQGYSCAVT LKKVNKKDAS NPFTVTFEPK
160 170 180 190 200
EPTLRLECQS SLEAKHWGAT YALFRIFNHL SLNLALPPGP REYWVKMEAY
210 220 230 240 250
KKTAPSHQDW MWASDPFEAA AKRDAEKAKK EQDKLAAADA ASRGEVSIIN
260 270 280 290 300
AKLNGAAKPL SKAWQEAKEV RLASSLREKI EATIRRAMSI FPSASAAPLD
310 320 330 340 350
LVEEDQDADT AAPNSTPNID AAGLEKELTS YGFRRGHARS AISWLTSARI
360 370 380 390 400
ALSNPSSSST TAAALVDPML ASAASLADRE AALEYLMLYT PEEDLPARFK
410 420 430 440 450
PSTTSESFVT SSKAGASGDA LAVGWAVDKL SKQAGLPRKA VQAVFKRIAA
460 470 480 490 500
AEHERNVELP RLVKEGLALE MMLRQMAGWD SPAQAEEQWT SDAILDAVLF
510 520 530 540 550
FPTRVNDADK EEIEIKRADE RMAVEAVLGD DRVVVPSEHQ RLGVQDYDVT
560 570 580 590 600
IAGPGTSVGG TEDVRLRISS HPQALYPLAR DKTHAVALPA FCVVSKTLPS
610 620 630 640 650
YLKLALTQHL LRAFQGDNRR MDWYDAIEAG DGGIVLSLVE ELESMWSKMI
660 670 680 690 700
DDPPLLSSVM QYLVGPDSAE SSVEATPETS RAATPTGPSR IANKRRTGGG
710 720 730 740 750
RALRRDAEVD AQLQRQQRQL HTSPSYSKMD ETRRSLPAAS AAREILGLIR
760 770 780 790 800
SNRVVIIAGE TGCGKTTQVP QFILDEAIEA GRGSECNIVV TQPRRVSAIG
810 820 830 840 850
VASRVAVERG EKLDGKKKAV APGSLVGYAI RGERRASREC RLLFTTTGVL
860 870 880 890 900
LRRLGAGGDT DLKGISHVVV DEVHERNVDS DFLLLELREL LRRNSRIKVV
910 920 930 940 950
LMSATINQET FASYFGKAPC ISIPGRTFAV EDHYLEDIVQ QSGFRPSGNE
960 970 980 990 1000
WRGSARGGKQ IEQEIGQLRA HLQAQGVDEE TCKAVESLSR SGGRISYELL
1010 1020 1030 1040 1050
GAVVRYVVER AENEELSGAA DGDVGGAILV FCPGVGEIRQ AIDAITTSVR
1060 1070 1080 1090 1100
GQSKVEILPL HANLSADEQR RVFQPVGAGR RKIVVSTNVA ETSITIPDVS
1110 1120 1130 1140 1150
YVVDTGRVKE TRFEPESGLT RLVECWASRA ACKQRRGRAG RVRAGECFRL
1160 1170 1180 1190 1200
YSRYVDEKKM AAQQTPEMRR VPLESLFLEV KSMREDEDVK EYLNKALDPP
1210 1220 1230 1240 1250
SLASMDAALT NLIEAGALQS DRGYKSRLTS LGKHLAQLPL DLRLAKLLIM
1260 1270 1280 1290 1300
GTIFGCLGPM LTVASIMSCK PLFNTPFEKR EEASKARASF AAAGCRSDLL
1310 1320 1330 1340 1350
ADAAAFEEWQ TMRAQRKTNG EIREWCESHF ISQSSLRDIQ TNRLDLLSHL
1360 1370 1380 1390 1400
QEMGFVAPDY SAFGVYDDER YDMNAQHAGV LRSVILAGLW PAVVRIDVPS
1410 1420 1430 1440 1450
AKFDQSSSGT VQREAEARQV KYFDRNGRVF LHPSSTLFSC KGFESSYLTT
1460 1470 1480 1490 1500
FAKSSTGAGA DSKVYLRDAT EVPLFALLLF GGKLKINHFA GGIGIGSNQS
1510 1520 1530 1540 1550
GGDAKDENWV RLRANARIGV LCAQLRRLLD AVLDHAIDEP QDMFAVPGCK
1560
DVLSVIGQVL QRDGLAA
Length:1,567
Mass (Da):170,457
Last modified:June 10, 2008 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iED9EE6607C850680
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
CM003151 Genomic DNA Translation: KIS67610.1

NCBI Reference Sequences

More...
RefSeqi
XP_011390801.1, XM_011392499.1

Genome annotation databases

Ensembl fungal genome annotation project

More...
EnsemblFungii
KIS67610; KIS67610; UMAG_11114

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
23567040

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
uma:UMAG_11114

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM003151 Genomic DNA Translation: KIS67610.1
RefSeqiXP_011390801.1, XM_011392499.1

3D structure databases

SMRiP0C7L7
ModBaseiSearch...

Protein-protein interaction databases

STRINGi5270.UM04112P0

Proteomic databases

PRIDEiP0C7L7

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiKIS67610; KIS67610; UMAG_11114
GeneIDi23567040
KEGGiuma:UMAG_11114

Organism-specific databases

EuPathDBiFungiDB:UMAG_11114

Phylogenomic databases

HOGENOMiHOG000167651
InParanoidiP0C7L7
OrthoDBi278674at2759

Family and domain databases

InterProiView protein in InterPro
IPR011545 DEAD/DEAH_box_helicase_dom
IPR002464 DNA/RNA_helicase_DEAH_CS
IPR011709 DUF1605
IPR007502 Helicase-assoc_dom
IPR014001 Helicase_ATP-bd
IPR001650 Helicase_C
IPR027417 P-loop_NTPase
PfamiView protein in Pfam
PF00270 DEAD, 1 hit
PF04408 HA2, 1 hit
PF00271 Helicase_C, 1 hit
PF07717 OB_NTP_bind, 1 hit
SMARTiView protein in SMART
SM00487 DEXDc, 1 hit
SM00847 HA2, 1 hit
SM00490 HELICc, 1 hit
SUPFAMiSSF52540 SSF52540, 1 hit
PROSITEiView protein in PROSITE
PS00690 DEAH_ATP_HELICASE, 1 hit
PS51192 HELICASE_ATP_BIND_1, 1 hit
PS51194 HELICASE_CTER, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiYUM14_USTMA
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: P0C7L7
Secondary accession number(s): A0A0D1DYN5, Q4P701
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 10, 2008
Last sequence update: June 10, 2008
Last modified: July 31, 2019
This is version 59 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
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