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Protein

Uncharacterized protein YciO

Gene

yciO

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Enzyme and pathway databases

BioCyciEcoCyc:G6635-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YciO
Gene namesi
Name:yciO
Ordered Locus Names:b1267, JW5196
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12967 yciO

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: EcoCyc

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002020141 – 206Uncharacterized protein YciOAdd BLAST206

Proteomic databases

PaxDbiP0AFR4
PRIDEiP0AFR4

Interactioni

Protein-protein interaction databases

BioGridi4260126, 26 interactors
STRINGi316385.ECDH10B_1382

Structurei

Secondary structure

1206
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details

3D structure databases

ProteinModelPortaliP0AFR4
SMRiP0AFR4
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP0AFR4

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini14 – 200YrdC-likePROSITE-ProRule annotationAdd BLAST187

Sequence similaritiesi

Belongs to the SUA5 family.Curated

Phylogenomic databases

eggNOGiENOG4107RTD Bacteria
COG0009 LUCA
HOGENOMiHOG000076162
InParanoidiP0AFR4
PhylomeDBiP0AFR4

Family and domain databases

InterProiView protein in InterPro
IPR017945 DHBP_synth_RibB-like_a/b_dom
IPR006070 YrdC-like_dom
PfamiView protein in Pfam
PF01300 Sua5_yciO_yrdC, 1 hit
SUPFAMiSSF55821 SSF55821, 1 hit
TIGRFAMsiTIGR00057 TIGR00057, 1 hit
PROSITEiView protein in PROSITE
PS51163 YRDC, 1 hit

Sequencei

Sequence statusi: Complete.

P0AFR4-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSQFFYIHPD NPQQRLINQA VEIVRKGGVI VYPTDSGYAL GCKIEDKNAM
60 70 80 90 100
ERICRIRQLP DGHNFTLMCR DLSELSTYSF VDNVAFRLMK NNTPGNYTFI
110 120 130 140 150
LKGTKEVPRR LLQEKRKTIG MRVPSNPIAQ ALLEALGEPM LSTSLMLPGS
160 170 180 190 200
EFTESDPEEI KDRLEKQVDL IIHGGYLGQK PTTVIDLTDD TPVVVREGVG

DVKPFL
Length:206
Mass (Da):23,212
Last modified:December 20, 2005 - v1
Checksum:iBFE565F4087E48B4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA Translation: AAC74349.2
AP009048 Genomic DNA Translation: BAA14801.2
M38366 Genomic DNA No translation available.
U18111 Genomic DNA Translation: AAB59987.1
RefSeqiNP_415783.6, NC_000913.3
WP_001295575.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC74349; AAC74349; b1267
BAA14801; BAA14801; BAA14801
GeneIDi945854
KEGGiecj:JW5196
eco:b1267
PATRICifig|1411691.4.peg.1017

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA Translation: AAC74349.2
AP009048 Genomic DNA Translation: BAA14801.2
M38366 Genomic DNA No translation available.
U18111 Genomic DNA Translation: AAB59987.1
RefSeqiNP_415783.6, NC_000913.3
WP_001295575.1, NZ_LN832404.1

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1K7JX-ray1.40A1-206[»]
1KK9X-ray2.10A1-206[»]
ProteinModelPortaliP0AFR4
SMRiP0AFR4
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260126, 26 interactors
STRINGi316385.ECDH10B_1382

Proteomic databases

PaxDbiP0AFR4
PRIDEiP0AFR4

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74349; AAC74349; b1267
BAA14801; BAA14801; BAA14801
GeneIDi945854
KEGGiecj:JW5196
eco:b1267
PATRICifig|1411691.4.peg.1017

Organism-specific databases

EchoBASEiEB2796
EcoGeneiEG12967 yciO

Phylogenomic databases

eggNOGiENOG4107RTD Bacteria
COG0009 LUCA
HOGENOMiHOG000076162
InParanoidiP0AFR4
PhylomeDBiP0AFR4

Enzyme and pathway databases

BioCyciEcoCyc:G6635-MONOMER

Miscellaneous databases

EvolutionaryTraceiP0AFR4
PROiPR:P0AFR4

Family and domain databases

InterProiView protein in InterPro
IPR017945 DHBP_synth_RibB-like_a/b_dom
IPR006070 YrdC-like_dom
PfamiView protein in Pfam
PF01300 Sua5_yciO_yrdC, 1 hit
SUPFAMiSSF55821 SSF55821, 1 hit
TIGRFAMsiTIGR00057 TIGR00057, 1 hit
PROSITEiView protein in PROSITE
PS51163 YRDC, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiYCIO_ECOLI
AccessioniPrimary (citable) accession number: P0AFR4
Secondary accession number(s): P45847
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 20, 2005
Last sequence update: December 20, 2005
Last modified: November 7, 2018
This is version 95 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
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Main funding by: National Institutes of Health

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