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UniProtKB - P0AF40 (YIJD_ECOLI)
Protein
Inner membrane protein YijD
Gene
yijD
Organism
Escherichia coli (strain K12)
Status
Functioni
Miscellaneous
Probably part of the fabR-yijD operon.1 Publication
Enzyme and pathway databases
BioCyci | EcoCyc:EG11395-MONOMER |
Names & Taxonomyi
Protein namesi | Recommended name: Inner membrane protein YijD |
Gene namesi | Name:yijD Ordered Locus Names:b3964, JW3936 |
Organismi | Escherichia coli (strain K12) |
Taxonomic identifieri | 83333 [NCBI] |
Taxonomic lineagei | Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacterales › Enterobacteriaceae › Escherichia › |
Proteomesi |
|
Subcellular locationi
Plasma membrane
- Cell inner membrane 1 Publication; Multi-pass membrane protein Curated
Plasma Membrane
- plasma membrane Source: EcoCyc
Other locations
- integral component of membrane Source: UniProtKB-KW
Topology
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Topological domaini | 1 – 8 | CytoplasmicSequence analysis | 8 | |
Transmembranei | 9 – 28 | HelicalSequence analysisAdd BLAST | 20 | |
Topological domaini | 29 – 31 | PeriplasmicSequence analysis | 3 | |
Transmembranei | 32 – 50 | HelicalSequence analysisAdd BLAST | 19 | |
Topological domaini | 51 – 61 | CytoplasmicSequence analysisAdd BLAST | 11 | |
Transmembranei | 62 – 84 | HelicalSequence analysisAdd BLAST | 23 | |
Topological domaini | 85 – 88 | PeriplasmicSequence analysis | 4 | |
Transmembranei | 89 – 108 | HelicalSequence analysisAdd BLAST | 20 | |
Topological domaini | 109 – 119 | CytoplasmicSequence analysis1 PublicationAdd BLAST | 11 |
Keywords - Cellular componenti
Cell inner membrane, Cell membrane, MembranePathology & Biotechi
Disruption phenotypei
No alteration in fatty acid composition.1 Publication
PTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
ChainiPRO_0000169698 | 1 – 119 | Inner membrane protein YijDAdd BLAST | 119 |
Proteomic databases
PaxDbi | P0AF40 |
PRIDEi | P0AF40 |
Interactioni
Protein-protein interaction databases
BioGRIDi | 4262183, 10 interactors 852755, 2 interactors |
IntActi | P0AF40, 2 interactors |
STRINGi | 511145.b3964 |
Structurei
3D structure databases
AlphaFoldDBi | P0AF40 |
ModBasei | Search... |
SWISS-MODEL-Workspacei | Submit a new modelling project... |
Family & Domainsi
Keywords - Domaini
Transmembrane, Transmembrane helixPhylogenomic databases
eggNOGi | ENOG5031GYK, Bacteria |
HOGENOMi | CLU_138008_1_0_6 |
OMAi | GSNFFAI |
PhylomeDBi | P0AF40 |
Family and domain databases
InterProi | View protein in InterPro IPR009867, DUF1422 |
Pfami | View protein in Pfam PF07226, DUF1422, 1 hit |
i Sequence
Sequence statusi: Complete.
P0AF40-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MKQANQDRGT LLLALVAGLS INGTFAALFS SIVPFSVFPI ISLVLTVYCL
60 70 80 90 100
HQRYLNRTMP VGLPGLAAAC FILGVLLYST VVRAEYPDIG SNFFPAVLSV
110
IMVFWIGAKM RNRKQEVAE
Experimental Info
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Sequence conflicti | 13 | L → LL in CAA46824 (PubMed:1447162).Curated | 1 | |
Sequence conflicti | 94 | F → L in CAA46824 (PubMed:1447162).Curated | 1 | |
Sequence conflicti | 100 – 110 | VIMVFWIGAKM → SLWCSGLARRW in CAA46824 (PubMed:1447162).CuratedAdd BLAST | 11 |
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | X66026 Genomic DNA Translation: CAA46824.1 U00006 Genomic DNA Translation: AAC43070.1 U00096 Genomic DNA Translation: AAC76946.1 AP009048 Genomic DNA Translation: BAE77347.1 |
PIRi | G65203 S21565 |
RefSeqi | NP_418399.1, NC_000913.3 WP_000806411.1, NZ_STEB01000037.1 |
Genome annotation databases
EnsemblBacteriai | AAC76946; AAC76946; b3964 BAE77347; BAE77347; BAE77347 |
GeneIDi | 67417515 948459 |
KEGGi | ecj:JW3936 eco:b3964 |
PATRICi | fig|1411691.4.peg.2740 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | X66026 Genomic DNA Translation: CAA46824.1 U00006 Genomic DNA Translation: AAC43070.1 U00096 Genomic DNA Translation: AAC76946.1 AP009048 Genomic DNA Translation: BAE77347.1 |
PIRi | G65203 S21565 |
RefSeqi | NP_418399.1, NC_000913.3 WP_000806411.1, NZ_STEB01000037.1 |
3D structure databases
AlphaFoldDBi | P0AF40 |
ModBasei | Search... |
SWISS-MODEL-Workspacei | Submit a new modelling project... |
Protein-protein interaction databases
BioGRIDi | 4262183, 10 interactors 852755, 2 interactors |
IntActi | P0AF40, 2 interactors |
STRINGi | 511145.b3964 |
Proteomic databases
PaxDbi | P0AF40 |
PRIDEi | P0AF40 |
Genome annotation databases
EnsemblBacteriai | AAC76946; AAC76946; b3964 BAE77347; BAE77347; BAE77347 |
GeneIDi | 67417515 948459 |
KEGGi | ecj:JW3936 eco:b3964 |
PATRICi | fig|1411691.4.peg.2740 |
Organism-specific databases
EchoBASEi | EB1368 |
Phylogenomic databases
eggNOGi | ENOG5031GYK, Bacteria |
HOGENOMi | CLU_138008_1_0_6 |
OMAi | GSNFFAI |
PhylomeDBi | P0AF40 |
Enzyme and pathway databases
BioCyci | EcoCyc:EG11395-MONOMER |
Miscellaneous databases
PROi | PR:P0AF40 |
Family and domain databases
InterProi | View protein in InterPro IPR009867, DUF1422 |
Pfami | View protein in Pfam PF07226, DUF1422, 1 hit |
MobiDBi | Search... |
Entry informationi
Entry namei | YIJD_ECOLI | |
Accessioni | P0AF40Primary (citable) accession number: P0AF40 Secondary accession number(s): P27308, Q2M8Q9 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | December 20, 2005 |
Last sequence update: | December 20, 2005 | |
Last modified: | May 25, 2022 | |
This is version 101 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Prokaryotic Protein Annotation Program |