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UniProtKB - P0ADZ4 (RS15_ECOLI)

Protein

30S ribosomal protein S15

Gene

rpsO

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA (PubMed:12809609, PubMed:16272117). Binds to its own mRNA, stabilizing it 5-UTR and preventing its translation (PubMed:24339747).3 Publications
In the E.coli 70S ribosome it has been modeled (PubMed:12809609) to contact the 23S rRNA of the 50S subunit forming part of bridge B4. In the two 3.5 A resolved ribosome structures (PubMed:16272117) there are minor differences between side-chain conformations.3 Publications

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

  • rRNA binding Source: EcoliWiki
  • structural constituent of ribosome Source: CAFA
View the complete GO annotation on QuickGO ...

GO - Biological processi

View the complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding
Biological processTranslation regulation

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

More...BioCyci		EcoCyc:EG10914-MONOMER
MetaCyc:EG10914-MONOMER

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
30S ribosomal protein S15UniRule annotation
Alternative name(s):
Small ribosomal subunit protein uS151 Publication
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:rpsOUniRule annotation
Synonyms:secC
Ordered Locus Names:b3165, JW3134
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiEscherichia coli (strain K12)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri83333 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteria › Proteobacteria › Gammaproteobacteria › Enterobacterales › Enterobacteriaceae › Escherichia ›
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000318 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

Escherichia coli strain K12 genome database

More...EcoGenei		EG10914 rpsO

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

GO - Cellular componenti

View the complete GO annotation on QuickGO ...

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/ptm_processing_section">PTM / Processing</a> section indicates that the initiator methionine is cleaved from the mature protein.<p><a href='/help/init_met' target='_top'>More...</a></p>Initiator methionineiRemoved1 Publication
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00001154372 – 8930S ribosomal protein S15Add BLAST88

Proteomic databases

Encyclopedia of Proteome Dynamics

More...EPDi		P0ADZ4

jPOST - Japan Proteome Standard Repository/Database

More...jPOSTi		P0ADZ4

PaxDb, a database of protein abundance averages across all three domains of life

More...PaxDbi		P0ADZ4

PRoteomics IDEntifications database

More...PRIDEi		P0ADZ4

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the ‘Expression’ section reports the experimentally proven effects of inducers and repressors (usually chemical compounds or environmental factors) on the level of protein (or mRNA) expression (up-regulation, down-regulation, constitutive expression).<p><a href='/help/induction' target='_top'>More...</a></p>Inductioni

Part of the metY operon that extends to pnp, also has its own promoter (PubMed:2849753).1 Publication

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction_section">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Part of the 30S ribosomal subunit (PubMed:776686, PubMed:10094780, PubMed:12244297, PubMed:12809609, PubMed:16272117, PubMed:27934701, PubMed:27906160, PubMed:27906161). Forms a bridge to the 50S subunit in the 70S ribosome, contacting the 23S rRNA (PubMed:12809609, PubMed:16272117).8 Publications

Protein-protein interaction databases

Database of interacting proteins

More...DIPi		DIP-47909N

Protein interaction database and analysis system

More...IntActi		P0ADZ4, 30 interactors

STRING: functional protein association networks

More...STRINGi		316385.ECDH10B_3339

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

Secondary structure

189
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details

3D structure databases

Select the link destinations:

Protein Data Bank Europe

More...PDBei

Protein Data Bank RCSB

More...RCSB PDBi

Protein Data Bank Japan

More...PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1EG0electron microscopy11.50F1-89[»]
2VAZelectron microscopy10.00F2-89[»]
2YKRelectron microscopy9.80O2-89[»]
3J9Yelectron microscopy3.90o1-89[»]
3J9Zelectron microscopy3.60SO2-89[»]
3JA1electron microscopy3.60SO2-89[»]
3JBUelectron microscopy3.64O1-89[»]
3JBVelectron microscopy3.32O1-89[»]
3JCDelectron microscopy3.70o1-89[»]
3JCEelectron microscopy3.20o1-89[»]
3JCJelectron microscopy3.70u1-89[»]
3JCNelectron microscopy4.60p1-89[»]
4A2Ielectron microscopy16.50O2-89[»]
4ADVelectron microscopy13.50O1-89[»]
4U1UX-ray2.95AO/CO2-89[»]
4U1VX-ray3.00AO/CO2-89[»]
4U20X-ray2.90AO/CO2-89[»]
4U24X-ray2.90AO/CO2-89[»]
4U25X-ray2.90AO/CO2-89[»]
4U26X-ray2.80AO/CO2-89[»]
4U27X-ray2.80AO/CO2-89[»]
4V47electron microscopy12.30BO2-89[»]
4V48electron microscopy11.50BO2-89[»]
4V4HX-ray3.46AO/CO1-89[»]
4V4QX-ray3.46AO/CO1-89[»]
4V4Velectron microscopy15.00AO3-88[»]
4V4Welectron microscopy15.00AO3-88[»]
4V50X-ray3.22AO/CO2-89[»]
4V52X-ray3.21AO/CO1-89[»]
4V53X-ray3.54AO/CO1-89[»]
4V54X-ray3.30AO/CO1-89[»]
4V55X-ray4.00AO/CO1-89[»]
4V56X-ray3.93AO/CO1-89[»]
4V57X-ray3.50AO/CO1-89[»]
4V5BX-ray3.74BO/DO1-89[»]
4V5Helectron microscopy5.80AO2-89[»]
4V5YX-ray4.45AO/CO1-89[»]
4V64X-ray3.50AO/CO1-89[»]
4V65electron microscopy9.00AH1-89[»]
4V66electron microscopy9.00AH1-89[»]
4V69electron microscopy6.70AO2-89[»]
4V6CX-ray3.19AO/CO1-89[»]
4V6DX-ray3.81AO/CO1-89[»]
4V6EX-ray3.71AO/CO1-89[»]
4V6Kelectron microscopy8.25BS1-89[»]
4V6Lelectron microscopy13.20AS1-89[»]
4V6Melectron microscopy-O2-89[»]
4V6Nelectron microscopy12.10BR2-89[»]
4V6Oelectron microscopy14.70AR2-89[»]
4V6Pelectron microscopy13.50AR2-89[»]
4V6Qelectron microscopy11.50AR2-89[»]
4V6Relectron microscopy11.50AR2-89[»]
4V6Selectron microscopy13.10BQ2-89[»]
4V6Telectron microscopy8.30AO2-89[»]
4V6Velectron microscopy9.80AO2-89[»]
4V6Yelectron microscopy12.00AO1-89[»]
4V6Zelectron microscopy12.00AO1-89[»]
4V70electron microscopy17.00AO1-89[»]
4V71electron microscopy20.00AO1-89[»]
4V72electron microscopy13.00AO1-89[»]
4V73electron microscopy15.00AO1-89[»]
4V74electron microscopy17.00AO1-89[»]
4V75electron microscopy12.00AO1-89[»]
4V76electron microscopy17.00AO1-89[»]
4V77electron microscopy17.00AO1-89[»]
4V78electron microscopy20.00AO1-89[»]
4V79electron microscopy15.00AO1-89[»]
4V7Aelectron microscopy9.00AO1-89[»]
4V7Belectron microscopy6.80AO1-89[»]
4V7Celectron microscopy7.60AO2-89[»]
4V7Delectron microscopy7.60BO2-89[»]
4V7Ielectron microscopy9.60BO1-89[»]
4V7SX-ray3.25AO/CO2-89[»]
4V7TX-ray3.19AO/CO2-89[»]
4V7UX-ray3.10AO/CO2-89[»]
4V7VX-ray3.29AO/CO2-89[»]
4V85X-ray3.20O1-89[»]
4V89X-ray3.70AO1-89[»]
4V9CX-ray3.30AO/CO1-89[»]
4V9DX-ray3.00AO/BO2-89[»]
4V9OX-ray2.90BO/DO/FO/HO1-89[»]
4V9PX-ray2.90BO/DO/FO/HO1-89[»]
4WF1X-ray3.09AO/CO2-89[»]
4WWWX-ray3.10QO/XO2-89[»]
4YBBX-ray2.10AO/BO2-89[»]
5AFIelectron microscopy2.90o1-89[»]
5H5Uelectron microscopy3.00v2-89[»]
5IQRelectron microscopy3.00t1-89[»]
5IT8X-ray3.12AO/BO2-89[»]
5J5BX-ray2.80AO/BO2-89[»]
5J7LX-ray3.00AO/BO2-89[»]
5J88X-ray3.32AO/BO2-89[»]
5J8AX-ray3.10AO/BO2-89[»]
5J91X-ray2.96AO/BO2-89[»]
5JC9X-ray3.03AO/BO2-89[»]
5JTEelectron microscopy3.60AO1-89[»]
5JU8electron microscopy3.60AO1-89[»]
5KCRelectron microscopy3.601o1-89[»]
5KCSelectron microscopy3.901o1-89[»]
5KPSelectron microscopy3.90201-89[»]
5KPVelectron microscopy4.10191-89[»]
5KPWelectron microscopy3.90191-89[»]
5KPXelectron microscopy3.90191-89[»]
5L3Pelectron microscopy3.70o1-89[»]
5LZAelectron microscopy3.60o2-89[»]
5LZBelectron microscopy5.30o2-89[»]
5LZCelectron microscopy4.80o2-89[»]
5LZDelectron microscopy3.40o2-89[»]
5LZEelectron microscopy3.50o2-89[»]
5LZFelectron microscopy4.60o2-89[»]
5MDVelectron microscopy2.97t1-89[»]
5MDWelectron microscopy3.06t1-89[»]
5MDYelectron microscopy3.35t1-89[»]
5MDZelectron microscopy3.10t1-89[»]
5ME0electron microscopy13.50O1-89[»]
5ME1electron microscopy13.50O1-89[»]
5MGPelectron microscopy3.10o2-89[»]
5MY1electron microscopy7.60O1-89[»]
5NO2electron microscopy5.16O2-89[»]
5NO3electron microscopy5.16O2-89[»]
5NO4electron microscopy5.16O2-89[»]
5NP6electron microscopy3.60R2-89[»]
5NWYelectron microscopy2.93E1-89[»]
5O2Relectron microscopy3.40o2-89[»]
5U4Ielectron microscopy3.50o2-89[»]
5U9Felectron microscopy3.20O1-89[»]
5U9Gelectron microscopy3.20O1-89[»]
5UYKelectron microscopy3.90O2-89[»]
5UYLelectron microscopy3.60O2-89[»]
5UYMelectron microscopy3.20O2-89[»]
5UYNelectron microscopy4.00O2-89[»]
5UYPelectron microscopy3.90O2-89[»]
5UYQelectron microscopy3.80O2-89[»]
5UZ4electron microscopy5.80O1-89[»]
5WDTelectron microscopy3.00o2-89[»]
5WE4electron microscopy3.10o2-89[»]
5WE6electron microscopy3.40o2-89[»]
5WFKelectron microscopy3.40o2-89[»]
6BU8electron microscopy3.50O2-89[»]
6C4Ielectron microscopy3.24o1-89[»]
6ENFelectron microscopy3.20o2-89[»]
6ENJelectron microscopy3.70o2-89[»]
6ENUelectron microscopy3.10o2-89[»]
6GWTelectron microscopy3.80o2-89[»]
6GXMelectron microscopy3.80o2-89[»]
6GXNelectron microscopy3.90o2-89[»]
6GXOelectron microscopy3.90o2-89[»]
6GXPelectron microscopy4.40o2-89[»]
6H4Nelectron microscopy3.00o2-89[»]
6H58electron microscopy7.90o/oo2-89[»]

Protein Model Portal of the PSI-Nature Structural Biology Knowledgebase

More...ProteinModelPortali		P0ADZ4

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...SMRi		P0ADZ4

Database of comparative protein structure models

More...ModBasei		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

Miscellaneous databases

Relative evolutionary importance of amino acids within a protein sequence

More...EvolutionaryTracei		P0ADZ4

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the universal ribosomal protein uS15 family.UniRule annotation

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		ENOG4105K77 Bacteria
COG0184 LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		HOG000040097

InParanoid: Eukaryotic Ortholog Groups

More...InParanoidi		P0ADZ4

KEGG Orthology (KO)

More...KOi		K02956

Database for complete collections of gene phylogenies

More...PhylomeDBi		P0ADZ4

Family and domain databases

Conserved Domains Database

More...CDDi		cd00353 Ribosomal_S15p_S13e, 1 hit

HAMAP database of protein families

More...HAMAPi		MF_01343_B Ribosomal_S15_B, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR000589 Ribosomal_S15
IPR005290 Ribosomal_S15_bac-type
IPR009068 S15_NS1_RNA-bd

The PANTHER Classification System

More...PANTHERi		PTHR23321 PTHR23321, 1 hit

Pfam protein domain database

More...Pfami		View protein in Pfam
PF00312 Ribosomal_S15, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...SMARTi		View protein in SMART
SM01387 Ribosomal_S15, 1 hit

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF47060 SSF47060, 1 hit

TIGRFAMs; a protein family database

More...TIGRFAMsi		TIGR00952 S15_bact, 1 hit

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS00362 RIBOSOMAL_S15, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is in its mature form or if it represents the precursor.<p><a href='/help/sequence_processing' target='_top'>More...</a></p>Sequence processingi: The displayed sequence is further processed into a mature form.

P0ADZ4-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSLSTEATAK IVSEFGRDAN DTGSTEVQVA LLTAQINHLQ GHFAEHKKDH 
        60         70         80 
HSRRGLLRMV SQRRKLLDYL KRKDVARYTQ LIERLGLRR
Length:89
Mass (Da):10,269
Last modified:January 23, 2007 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iAABDDA6674B99B1C
GO

<p>This subsection of the ‘Sequence’ section reports information derived from mass spectrometry experiments done on the entire protein or on biologically active derived peptide(s).<p><a href='/help/mass_spectrometry' target='_top'>More...</a></p>Mass spectrometryi

Molecular mass is 10137.6 Da from positions 2 - 89. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
X01073 Genomic DNA Translation: CAA25536.1
X00761 Genomic DNA Translation: CAA25331.1
M14425 Genomic DNA Translation: AAA24595.1
J02638 Genomic DNA Translation: AAA83904.1
U18997 Genomic DNA Translation: AAA57968.1
U00096 Genomic DNA Translation: AAC76199.1
AP009048 Genomic DNA Translation: BAE77211.1
X13775 Genomic DNA Translation: CAA32022.1

Protein sequence database of the Protein Information Resource

More...PIRi		B26118 R3EC15

NCBI Reference Sequences

More...RefSeqi		NP_417634.1, NC_000913.3
WP_000059466.1, NZ_LN832404.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...EnsemblBacteriai		AAC76199; AAC76199; b3165
BAE77211; BAE77211; BAE77211

Database of genes from NCBI RefSeq genomes

More...GeneIDi		947686

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		ecj:JW3134
eco:b3165

Pathosystems Resource Integration Center (PATRIC)

More...PATRICi		fig|1411691.4.peg.3565

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X01073 Genomic DNA Translation: CAA25536.1
X00761 Genomic DNA Translation: CAA25331.1
M14425 Genomic DNA Translation: AAA24595.1
J02638 Genomic DNA Translation: AAA83904.1
U18997 Genomic DNA Translation: AAA57968.1
U00096 Genomic DNA Translation: AAC76199.1
AP009048 Genomic DNA Translation: BAE77211.1
X13775 Genomic DNA Translation: CAA32022.1
PIRiB26118 R3EC15
RefSeqiNP_417634.1, NC_000913.3
WP_000059466.1, NZ_LN832404.1

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1EG0electron microscopy11.50F1-89[»]
2VAZelectron microscopy10.00F2-89[»]
2YKRelectron microscopy9.80O2-89[»]
3J9Yelectron microscopy3.90o1-89[»]
3J9Zelectron microscopy3.60SO2-89[»]
3JA1electron microscopy3.60SO2-89[»]
3JBUelectron microscopy3.64O1-89[»]
3JBVelectron microscopy3.32O1-89[»]
3JCDelectron microscopy3.70o1-89[»]
3JCEelectron microscopy3.20o1-89[»]
3JCJelectron microscopy3.70u1-89[»]
3JCNelectron microscopy4.60p1-89[»]
4A2Ielectron microscopy16.50O2-89[»]
4ADVelectron microscopy13.50O1-89[»]
4U1UX-ray2.95AO/CO2-89[»]
4U1VX-ray3.00AO/CO2-89[»]
4U20X-ray2.90AO/CO2-89[»]
4U24X-ray2.90AO/CO2-89[»]
4U25X-ray2.90AO/CO2-89[»]
4U26X-ray2.80AO/CO2-89[»]
4U27X-ray2.80AO/CO2-89[»]
4V47electron microscopy12.30BO2-89[»]
4V48electron microscopy11.50BO2-89[»]
4V4HX-ray3.46AO/CO1-89[»]
4V4QX-ray3.46AO/CO1-89[»]
4V4Velectron microscopy15.00AO3-88[»]
4V4Welectron microscopy15.00AO3-88[»]
4V50X-ray3.22AO/CO2-89[»]
4V52X-ray3.21AO/CO1-89[»]
4V53X-ray3.54AO/CO1-89[»]
4V54X-ray3.30AO/CO1-89[»]
4V55X-ray4.00AO/CO1-89[»]
4V56X-ray3.93AO/CO1-89[»]
4V57X-ray3.50AO/CO1-89[»]
4V5BX-ray3.74BO/DO1-89[»]
4V5Helectron microscopy5.80AO2-89[»]
4V5YX-ray4.45AO/CO1-89[»]
4V64X-ray3.50AO/CO1-89[»]
4V65electron microscopy9.00AH1-89[»]
4V66electron microscopy9.00AH1-89[»]
4V69electron microscopy6.70AO2-89[»]
4V6CX-ray3.19AO/CO1-89[»]
4V6DX-ray3.81AO/CO1-89[»]
4V6EX-ray3.71AO/CO1-89[»]
4V6Kelectron microscopy8.25BS1-89[»]
4V6Lelectron microscopy13.20AS1-89[»]
4V6Melectron microscopy-O2-89[»]
4V6Nelectron microscopy12.10BR2-89[»]
4V6Oelectron microscopy14.70AR2-89[»]
4V6Pelectron microscopy13.50AR2-89[»]
4V6Qelectron microscopy11.50AR2-89[»]
4V6Relectron microscopy11.50AR2-89[»]
4V6Selectron microscopy13.10BQ2-89[»]
4V6Telectron microscopy8.30AO2-89[»]
4V6Velectron microscopy9.80AO2-89[»]
4V6Yelectron microscopy12.00AO1-89[»]
4V6Zelectron microscopy12.00AO1-89[»]
4V70electron microscopy17.00AO1-89[»]
4V71electron microscopy20.00AO1-89[»]
4V72electron microscopy13.00AO1-89[»]
4V73electron microscopy15.00AO1-89[»]
4V74electron microscopy17.00AO1-89[»]
4V75electron microscopy12.00AO1-89[»]
4V76electron microscopy17.00AO1-89[»]
4V77electron microscopy17.00AO1-89[»]
4V78electron microscopy20.00AO1-89[»]
4V79electron microscopy15.00AO1-89[»]
4V7Aelectron microscopy9.00AO1-89[»]
4V7Belectron microscopy6.80AO1-89[»]
4V7Celectron microscopy7.60AO2-89[»]
4V7Delectron microscopy7.60BO2-89[»]
4V7Ielectron microscopy9.60BO1-89[»]
4V7SX-ray3.25AO/CO2-89[»]
4V7TX-ray3.19AO/CO2-89[»]
4V7UX-ray3.10AO/CO2-89[»]
4V7VX-ray3.29AO/CO2-89[»]
4V85X-ray3.20O1-89[»]
4V89X-ray3.70AO1-89[»]
4V9CX-ray3.30AO/CO1-89[»]
4V9DX-ray3.00AO/BO2-89[»]
4V9OX-ray2.90BO/DO/FO/HO1-89[»]
4V9PX-ray2.90BO/DO/FO/HO1-89[»]
4WF1X-ray3.09AO/CO2-89[»]
4WWWX-ray3.10QO/XO2-89[»]
4YBBX-ray2.10AO/BO2-89[»]
5AFIelectron microscopy2.90o1-89[»]
5H5Uelectron microscopy3.00v2-89[»]
5IQRelectron microscopy3.00t1-89[»]
5IT8X-ray3.12AO/BO2-89[»]
5J5BX-ray2.80AO/BO2-89[»]
5J7LX-ray3.00AO/BO2-89[»]
5J88X-ray3.32AO/BO2-89[»]
5J8AX-ray3.10AO/BO2-89[»]
5J91X-ray2.96AO/BO2-89[»]
5JC9X-ray3.03AO/BO2-89[»]
5JTEelectron microscopy3.60AO1-89[»]
5JU8electron microscopy3.60AO1-89[»]
5KCRelectron microscopy3.601o1-89[»]
5KCSelectron microscopy3.901o1-89[»]
5KPSelectron microscopy3.90201-89[»]
5KPVelectron microscopy4.10191-89[»]
5KPWelectron microscopy3.90191-89[»]
5KPXelectron microscopy3.90191-89[»]
5L3Pelectron microscopy3.70o1-89[»]
5LZAelectron microscopy3.60o2-89[»]
5LZBelectron microscopy5.30o2-89[»]
5LZCelectron microscopy4.80o2-89[»]
5LZDelectron microscopy3.40o2-89[»]
5LZEelectron microscopy3.50o2-89[»]
5LZFelectron microscopy4.60o2-89[»]
5MDVelectron microscopy2.97t1-89[»]
5MDWelectron microscopy3.06t1-89[»]
5MDYelectron microscopy3.35t1-89[»]
5MDZelectron microscopy3.10t1-89[»]
5ME0electron microscopy13.50O1-89[»]
5ME1electron microscopy13.50O1-89[»]
5MGPelectron microscopy3.10o2-89[»]
5MY1electron microscopy7.60O1-89[»]
5NO2electron microscopy5.16O2-89[»]
5NO3electron microscopy5.16O2-89[»]
5NO4electron microscopy5.16O2-89[»]
5NP6electron microscopy3.60R2-89[»]
5NWYelectron microscopy2.93E1-89[»]
5O2Relectron microscopy3.40o2-89[»]
5U4Ielectron microscopy3.50o2-89[»]
5U9Felectron microscopy3.20O1-89[»]
5U9Gelectron microscopy3.20O1-89[»]
5UYKelectron microscopy3.90O2-89[»]
5UYLelectron microscopy3.60O2-89[»]
5UYMelectron microscopy3.20O2-89[»]
5UYNelectron microscopy4.00O2-89[»]
5UYPelectron microscopy3.90O2-89[»]
5UYQelectron microscopy3.80O2-89[»]
5UZ4electron microscopy5.80O1-89[»]
5WDTelectron microscopy3.00o2-89[»]
5WE4electron microscopy3.10o2-89[»]
5WE6electron microscopy3.40o2-89[»]
5WFKelectron microscopy3.40o2-89[»]
6BU8electron microscopy3.50O2-89[»]
6C4Ielectron microscopy3.24o1-89[»]
6ENFelectron microscopy3.20o2-89[»]
6ENJelectron microscopy3.70o2-89[»]
6ENUelectron microscopy3.10o2-89[»]
6GWTelectron microscopy3.80o2-89[»]
6GXMelectron microscopy3.80o2-89[»]
6GXNelectron microscopy3.90o2-89[»]
6GXOelectron microscopy3.90o2-89[»]
6GXPelectron microscopy4.40o2-89[»]
6H4Nelectron microscopy3.00o2-89[»]
6H58electron microscopy7.90o/oo2-89[»]
ProteinModelPortaliP0ADZ4
SMRiP0ADZ4
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-47909N
IntActiP0ADZ4, 30 interactors
STRINGi316385.ECDH10B_3339

Proteomic databases

EPDiP0ADZ4
jPOSTiP0ADZ4
PaxDbiP0ADZ4
PRIDEiP0ADZ4

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76199; AAC76199; b3165
BAE77211; BAE77211; BAE77211
GeneIDi947686
KEGGiecj:JW3134
eco:b3165
PATRICifig|1411691.4.peg.3565

Organism-specific databases

EchoBASE - an integrated post-genomic database for E. coli

More...EchoBASEi		EB0907
EcoGeneiEG10914 rpsO

Phylogenomic databases

eggNOGiENOG4105K77 Bacteria
COG0184 LUCA
HOGENOMiHOG000040097
InParanoidiP0ADZ4
KOiK02956
PhylomeDBiP0ADZ4

Enzyme and pathway databases

BioCyciEcoCyc:EG10914-MONOMER
MetaCyc:EG10914-MONOMER

Miscellaneous databases

EvolutionaryTraceiP0ADZ4

Protein Ontology

More...PROi		PR:P0ADZ4

Family and domain databases

CDDicd00353 Ribosomal_S15p_S13e, 1 hit
HAMAPiMF_01343_B Ribosomal_S15_B, 1 hit
InterProiView protein in InterPro
IPR000589 Ribosomal_S15
IPR005290 Ribosomal_S15_bac-type
IPR009068 S15_NS1_RNA-bd
PANTHERiPTHR23321 PTHR23321, 1 hit
PfamiView protein in Pfam
PF00312 Ribosomal_S15, 1 hit
SMARTiView protein in SMART
SM01387 Ribosomal_S15, 1 hit
SUPFAMiSSF47060 SSF47060, 1 hit
TIGRFAMsiTIGR00952 S15_bact, 1 hit
PROSITEiView protein in PROSITE
PS00362 RIBOSOMAL_S15, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiRS15_ECOLI
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: P0ADZ4
Secondary accession number(s): P02371, Q2M945
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 21, 1986
Last sequence update: January 23, 2007
Last modified: January 16, 2019
This is version 123 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families
  3. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  4. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
UniProt is an ELIXIR core data resource
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