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Protein

Uncharacterized HTH-type transcriptional regulator YfeR

Gene

yfeR

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi20 – 39H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

  • transcription, DNA-templated Source: EcoCyc

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Enzyme and pathway databases

BioCyciEcoCyc:G7257-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YfeR
Gene namesi
Name:yfeR
Ordered Locus Names:b2409, JW2400
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG14159 yfeR

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: EcoCyc

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001057911 – 308Uncharacterized HTH-type transcriptional regulator YfeRAdd BLAST308

Proteomic databases

PaxDbiP0ACR7
PRIDEiP0ACR7

Interactioni

Protein-protein interaction databases

BioGridi4261239, 25 interactors
DIPiDIP-12017N
IntActiP0ACR7, 2 interactors
STRINGi316385.ECDH10B_2573

Structurei

3D structure databases

ProteinModelPortaliP0ACR7
SMRiP0ACR7
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 60HTH lysR-typePROSITE-ProRule annotationAdd BLAST60

Phylogenomic databases

eggNOGiENOG4108M0I Bacteria
ENOG410XQRQ LUCA
HOGENOMiHOG000233514
InParanoidiP0ACR7
OMAiMAVEWLP
PhylomeDBiP0ACR7

Family and domain databases

Gene3Di1.10.10.10, 1 hit
InterProiView protein in InterPro
IPR005119 LysR_subst-bd
IPR000847 Tscrpt_reg_HTH_LysR
IPR036388 WH-like_DNA-bd_sf
IPR036390 WH_DNA-bd_sf
PfamiView protein in Pfam
PF00126 HTH_1, 1 hit
PF03466 LysR_substrate, 1 hit
PRINTSiPR00039 HTHLYSR
SUPFAMiSSF46785 SSF46785, 1 hit
PROSITEiView protein in PROSITE
PS50931 HTH_LYSR, 1 hit

Sequencei

Sequence statusi: Complete.

P0ACR7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNYSLKQLKV FVTVAQEKSF SRAGERIGLS QSAVSHSVKE LENHTGVRLL
60 70 80 90 100
DRTTREVVLT DAGQQLALRL ERLLDELNST LRDTGRMGQQ LSGKVRVAAS
110 120 130 140 150
QTISAHLIPQ CIAESHRRYP DIQFVLHDRP QQWVMESIRQ GDVDFGIVID
160 170 180 190 200
PGPVGDLQCE AILSEPFFLL CHRDSALAVE DYVPWQALQG AKLVLQDYAS
210 220 230 240 250
GSRPLIDAAL ARNGIQANIV QEIGHPATLF PMVAAGIGIS ILPALALPLP
260 270 280 290 300
EGSPLVVKRI TPVVERQLML VRRKNRSLST AAEALWDVVR DQGNALMAGR

EGDPLYQI
Length:308
Mass (Da):33,903
Last modified:November 22, 2005 - v1
Checksum:i23B6A771E4AB8587
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA Translation: AAC75462.1
AP009048 Genomic DNA Translation: BAA16280.1
PIRiH65014
RefSeqiNP_416904.1, NC_000913.3
WP_001109794.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC75462; AAC75462; b2409
BAA16280; BAA16280; BAA16280
GeneIDi946873
KEGGiecj:JW2400
eco:b2409
PATRICifig|1411691.4.peg.4323

Entry informationi

Entry nameiYFER_ECOLI
AccessioniPrimary (citable) accession number: P0ACR7
Secondary accession number(s): P77500
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 22, 2005
Last sequence update: November 22, 2005
Last modified: March 28, 2018
This is version 97 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

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