UniProtKB - P0AB28 (YCED_ECOLI)
Protein
Large ribosomal RNA subunit accumulation protein YceD
Gene
yceD
Organism
Escherichia coli (strain K12)
Status
Functioni
Plays a role in synthesis, processing and/or stability of 23S rRNA.1 Publication
GO - Biological processi
- ribosome biogenesis Source: UniProtKB-KW
Keywordsi
Biological process | Ribosome biogenesis |
Enzyme and pathway databases
BioCyci | EcoCyc:EG11119-MONOMER |
Names & Taxonomyi
Protein namesi | Recommended name: Large ribosomal RNA subunit accumulation protein YceDAlternative name(s): 23S rRNA accumulation protein YceD1 Publication G30K1 Publication |
Gene namesi | Name:yceD Synonyms:g30k1 Publication Ordered Locus Names:b1088, JW1074 |
Organismi | Escherichia coli (strain K12) |
Taxonomic identifieri | 83333 [NCBI] |
Taxonomic lineagei | Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacterales › Enterobacteriaceae › Escherichia › |
Proteomesi |
|
Pathology & Biotechi
Disruption phenotypei
Accumulates reduced levels of 23S rRNA, no significant difference in 16S or 5S rRNA levels, nor in rpmF transcripts (ribosomal protein L32, next gene in its operon). No visible growth defects on rich medium at 37 or 25 degrees Celsius.1 Publication
PTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
ChainiPRO_0000168811 | 1 – 173 | Large ribosomal RNA subunit accumulation protein YceDAdd BLAST | 173 |
Proteomic databases
jPOSTi | P0AB28 |
PaxDbi | P0AB28 |
PRIDEi | P0AB28 |
Expressioni
Inductioni
Part of the yceD-rpmF operon.1 Publication
Interactioni
Protein-protein interaction databases
BioGRIDi | 4261028, 16 interactors 850022, 1 interactor |
IntActi | P0AB28, 11 interactors |
STRINGi | 511145.b1088 |
Family & Domainsi
Sequence similaritiesi
Belongs to the DUF177 domain family.Curated
Phylogenomic databases
eggNOGi | COG1399, Bacteria |
HOGENOMi | CLU_094127_2_1_6 |
InParanoidi | P0AB28 |
PhylomeDBi | P0AB28 |
Family and domain databases
InterProi | View protein in InterPro IPR003772, YceD IPR039255, YceD_bac |
PANTHERi | PTHR38099, PTHR38099, 1 hit |
Pfami | View protein in Pfam PF02620, YceD, 1 hit |
i Sequence
Sequence statusi: Complete.
P0AB28-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MQKVKLPLTL DPVRTAQKRL DYQGIYTPDQ VERVAESVVS VDSDVECSMS
60 70 80 90 100
FAIDNQRLAV LNGDAKVTVT LECQRCGKPF THQVYTTYCF SPVRSDEQAE
110 120 130 140 150
ALPEAYEPIE VNEFGEIDLL AMVEDEIILA LPVVPVHDSE HCEVSEADMV
160 170
FGELPEEAQK PNPFAVLASL KRK
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | M29698 Genomic DNA Translation: AAA24574.1 U00096 Genomic DNA Translation: AAC74172.1 AP009048 Genomic DNA Translation: BAA35896.1 M96791 Genomic DNA Translation: AAA23830.1 |
PIRi | JV0047 |
RefSeqi | NP_415606.1, NC_000913.3 WP_001174481.1, NZ_STEB01000016.1 |
Genome annotation databases
EnsemblBacteriai | AAC74172; AAC74172; b1088 BAA35896; BAA35896; BAA35896 |
GeneIDi | 52076411 945650 |
KEGGi | ecj:JW1074 eco:b1088 |
PATRICi | fig|511145.12.peg.1131 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | M29698 Genomic DNA Translation: AAA24574.1 U00096 Genomic DNA Translation: AAC74172.1 AP009048 Genomic DNA Translation: BAA35896.1 M96791 Genomic DNA Translation: AAA23830.1 |
PIRi | JV0047 |
RefSeqi | NP_415606.1, NC_000913.3 WP_001174481.1, NZ_STEB01000016.1 |
3D structure databases
ModBasei | Search... |
SWISS-MODEL-Workspacei | Submit a new modelling project... |
Protein-protein interaction databases
BioGRIDi | 4261028, 16 interactors 850022, 1 interactor |
IntActi | P0AB28, 11 interactors |
STRINGi | 511145.b1088 |
Proteomic databases
jPOSTi | P0AB28 |
PaxDbi | P0AB28 |
PRIDEi | P0AB28 |
Genome annotation databases
EnsemblBacteriai | AAC74172; AAC74172; b1088 BAA35896; BAA35896; BAA35896 |
GeneIDi | 52076411 945650 |
KEGGi | ecj:JW1074 eco:b1088 |
PATRICi | fig|511145.12.peg.1131 |
Organism-specific databases
EchoBASEi | EB1109 |
Phylogenomic databases
eggNOGi | COG1399, Bacteria |
HOGENOMi | CLU_094127_2_1_6 |
InParanoidi | P0AB28 |
PhylomeDBi | P0AB28 |
Enzyme and pathway databases
BioCyci | EcoCyc:EG11119-MONOMER |
Miscellaneous databases
PROi | PR:P0AB28 |
Family and domain databases
InterProi | View protein in InterPro IPR003772, YceD IPR039255, YceD_bac |
PANTHERi | PTHR38099, PTHR38099, 1 hit |
Pfami | View protein in Pfam PF02620, YceD, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | YCED_ECOLI | |
Accessioni | P0AB28Primary (citable) accession number: P0AB28 Secondary accession number(s): P14189 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | October 11, 2005 |
Last sequence update: | October 11, 2005 | |
Last modified: | December 2, 2020 | |
This is version 100 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Prokaryotic Protein Annotation Program |
Miscellaneousi
Keywords - Technical termi
Reference proteomeDocuments
- SIMILARITY comments
Index of protein domains and families