UniProtKB - P0A8J4 (YBED_ECOLI)
Protein
UPF0250 protein YbeD
Gene
ybeD
Organism
Escherichia coli (strain K12)
Status
Functioni
GO - Biological processi
- cellular response to heat Source: EcoCyc
Enzyme and pathway databases
BioCyci | EcoCyc:EG11592-MONOMER |
Names & Taxonomyi
Protein namesi | Recommended name: UPF0250 protein YbeD |
Gene namesi | Name:ybeD Ordered Locus Names:b0631, JW0626 |
Organismi | Escherichia coli (strain K12) |
Taxonomic identifieri | 83333 [NCBI] |
Taxonomic lineagei | Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacterales › Enterobacteriaceae › Escherichia › |
Proteomesi |
|
PTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
ChainiPRO_0000209296 | 1 – 87 | UPF0250 protein YbeDAdd BLAST | 87 |
Proteomic databases
jPOSTi | P0A8J4 |
PaxDbi | P0A8J4 |
PRIDEi | P0A8J4 |
Interactioni
Binary interactionsi
P0A8J4
With | #Exp. | IntAct |
---|---|---|
tufA [P0CE47] | 3 | EBI-370708,EBI-301077 |
Protein-protein interaction databases
BioGRIDi | 4260679, 235 interactors |
DIPi | DIP-31839N |
IntActi | P0A8J4, 10 interactors |
STRINGi | 511145.b0631 |
Structurei
Secondary structure
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details3D structure databases
SMRi | P0A8J4 |
ModBasei | Search... |
PDBe-KBi | Search... |
Miscellaneous databases
EvolutionaryTracei | P0A8J4 |
Family & Domainsi
Sequence similaritiesi
Belongs to the UPF0250 family.Curated
Phylogenomic databases
eggNOGi | COG2921, Bacteria |
HOGENOMi | CLU_161438_2_1_6 |
InParanoidi | P0A8J4 |
PhylomeDBi | P0A8J4 |
Family and domain databases
HAMAPi | MF_00659, UPF0250, 1 hit |
InterProi | View protein in InterPro IPR007454, UPF0250 IPR027471, YbeD-like_sf |
PANTHERi | PTHR38036, PTHR38036, 1 hit |
Pfami | View protein in Pfam PF04359, DUF493, 1 hit |
SUPFAMi | SSF117991, SSF117991, 1 hit |
i Sequence
Sequence statusi: Complete.
P0A8J4-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MKTKLNELLE FPTPFTYKVM GQALPELVDQ VVEVVQRHAP GDYTPTVKPS
60 70 80
SKGNYHSVSI TINATHIEQV ETLYEELGKI DIVRMVL
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | L07636 Genomic DNA Translation: AAA66341.1 U82598 Genomic DNA Translation: AAB40831.1 U00096 Genomic DNA Translation: AAC73732.1 AP009048 Genomic DNA Translation: BAA35274.1 |
PIRi | E64797 |
RefSeqi | NP_415164.1, NC_000913.3 WP_000850550.1, NZ_STEB01000031.1 |
Genome annotation databases
EnsemblBacteriai | AAC73732; AAC73732; b0631 BAA35274; BAA35274; BAA35274 |
GeneIDi | 58462994 945220 |
KEGGi | ecj:JW0626 eco:b0631 |
PATRICi | fig|511145.12.peg.661 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | L07636 Genomic DNA Translation: AAA66341.1 U82598 Genomic DNA Translation: AAB40831.1 U00096 Genomic DNA Translation: AAC73732.1 AP009048 Genomic DNA Translation: BAA35274.1 |
PIRi | E64797 |
RefSeqi | NP_415164.1, NC_000913.3 WP_000850550.1, NZ_STEB01000031.1 |
3D structure databases
Select the link destinations: PDBei RCSB PDBi PDBji Links Updated | PDB entry | Method | Resolution (Å) | Chain | Positions | PDBsum |
1RWU | NMR | - | A | 1-87 | [»] | |
SMRi | P0A8J4 | |||||
ModBasei | Search... | |||||
PDBe-KBi | Search... |
Protein-protein interaction databases
BioGRIDi | 4260679, 235 interactors |
DIPi | DIP-31839N |
IntActi | P0A8J4, 10 interactors |
STRINGi | 511145.b0631 |
Proteomic databases
jPOSTi | P0A8J4 |
PaxDbi | P0A8J4 |
PRIDEi | P0A8J4 |
Protocols and materials databases
DNASUi | 945220 |
Genome annotation databases
EnsemblBacteriai | AAC73732; AAC73732; b0631 BAA35274; BAA35274; BAA35274 |
GeneIDi | 58462994 945220 |
KEGGi | ecj:JW0626 eco:b0631 |
PATRICi | fig|511145.12.peg.661 |
Organism-specific databases
EchoBASEi | EB1550 |
Phylogenomic databases
eggNOGi | COG2921, Bacteria |
HOGENOMi | CLU_161438_2_1_6 |
InParanoidi | P0A8J4 |
PhylomeDBi | P0A8J4 |
Enzyme and pathway databases
BioCyci | EcoCyc:EG11592-MONOMER |
Miscellaneous databases
EvolutionaryTracei | P0A8J4 |
PROi | PR:P0A8J4 |
Family and domain databases
HAMAPi | MF_00659, UPF0250, 1 hit |
InterProi | View protein in InterPro IPR007454, UPF0250 IPR027471, YbeD-like_sf |
PANTHERi | PTHR38036, PTHR38036, 1 hit |
Pfami | View protein in Pfam PF04359, DUF493, 1 hit |
SUPFAMi | SSF117991, SSF117991, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | YBED_ECOLI | |
Accessioni | P0A8J4Primary (citable) accession number: P0A8J4 Secondary accession number(s): P30977 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | June 7, 2005 |
Last sequence update: | June 7, 2005 | |
Last modified: | April 7, 2021 | |
This is version 121 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Prokaryotic Protein Annotation Program |
Miscellaneousi
Keywords - Technical termi
3D-structure, Reference proteomeDocuments
- Uncharacterized protein families (UPF)
List of uncharacterized protein family (UPF) entries - PDB cross-references
Index of Protein Data Bank (PDB) cross-references - SIMILARITY comments
Index of protein domains and families