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UniProtKB - P0A7V8 (RS4_ECOLI)

Entry version 149 (13 Feb 2019)
Sequence version 2 (23 Jan 2007)
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Protein

30S ribosomal protein S4

Gene

rpsD

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

One of two assembly initiator proteins for the 30S subunit, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.1 Publication
With S5 and S12 plays an important role in translational accuracy; many suppressors of streptomycin-dependent mutants of protein S12 are found in this protein, some but not all of which decrease translational accuracy (ram, ribosomal ambiguity mutations).
Plays a role in mRNA unwinding by the ribosome, possibly by forming part of a processivity clamp.1 Publication
Protein S4 is also a translational repressor protein, it controls the translation of the alpha-operon (which codes for S13, S11, S4, RNA polymerase alpha subunit, and L17) by binding to its mRNA.1 Publication
Also functions as a rho-dependent antiterminator of rRNA transcription, increasing the synthesis of rRNA under conditions of excess protein, allowing a more rapid return to homeostasis. Binds directly to RNA polymerase.1 Publication

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

  • mRNA 5'-UTR binding Source: EcoCyc
  • rRNA binding Source: EcoliWiki
  • structural constituent of ribosome Source: CAFA
  • translation repressor activity, mRNA regulatory element binding Source: EcoCyc
View the complete GO annotation on QuickGO ...

GO - Biological processi

View the complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionRepressor, Ribonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding
Biological processAntibiotic resistance, Transcription, Transcription regulation, Transcription termination, Translation regulation

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

More...BioCyci		EcoCyc:EG10903-MONOMER
ECOL316407:JW3258-MONOMER
MetaCyc:EG10903-MONOMER

Protein family/group databases

MoonProt database of moonlighting proteins

More...MoonProti		P0A7V8

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
30S ribosomal protein S4
Alternative name(s):
Small ribosomal subunit protein uS41 Publication
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:rpsD
Synonyms:ramA
Ordered Locus Names:b3296, JW3258
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiEscherichia coli (strain K12)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri83333 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteria › Proteobacteria › Gammaproteobacteria › Enterobacterales › Enterobacteriaceae › Escherichia ›
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000318 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

Escherichia coli strain K12 genome database

More...EcoGenei		EG10903 rpsD

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

GO - Cellular componenti

View the complete GO annotation on QuickGO ...

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

Mutagenesis

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/manual/pathology_and_biotech_section">'Pathology and Biotech'</a> section describes the effect of the experimental mutation of one or more amino acid(s) on the biological properties of the protein.<p><a href='/help/mutagen' target='_top'>More...</a></p>Mutagenesisi44 – 47RKPR → AKPA: Decreases mRNA unwinding ability of the ribosome. 1 Publication4

Chemistry databases

Drug and drug target database

More...DrugBanki		DB00453 Clomocycline
DB00618 Demeclocycline
DB00254 Doxycycline
DB00256 Lymecycline
DB01017 Minocycline
DB00595 Oxytetracycline

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/ptm_processing_section">PTM / Processing</a> section indicates that the initiator methionine is cleaved from the mature protein.<p><a href='/help/init_met' target='_top'>More...</a></p>Initiator methionineiRemoved2 Publications
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00001323802 – 20630S ribosomal protein S4Add BLAST205

Proteomic databases

Encyclopedia of Proteome Dynamics

More...EPDi		P0A7V8

jPOST - Japan Proteome Standard Repository/Database

More...jPOSTi		P0A7V8

PaxDb, a database of protein abundance averages across all three domains of life

More...PaxDbi		P0A7V8

PRoteomics IDEntifications database

More...PRIDEi		P0A7V8

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction_section">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Part of the 30S ribosomal subunit (PubMed:4587210, PubMed:1100394, PubMed:7556101, PubMed:12809609, PubMed:16272117, PubMed:27934701, PubMed:10094780, PubMed:12244297, PubMed:27906160, PubMed:27906161, PubMed:28077875). Contacts protein S5. With proteins S3 and S5 encircles the mRNA as it enters the ribosome, which may play a role in mRNA helicase processivity (PubMed:15652481). Some nascent polypeptide chains are able to cross-link to this protein in situ (PubMed:9716382).13 Publications

<p>This subsection of the '<a href="http://www.uniprot.org/help/interaction_section%27">Interaction</a> section provides information about binary protein-protein interactions. The data presented in this section are a quality-filtered subset of binary interactions automatically derived from the <a href="http://www.ebi.ac.uk/intact/">IntAct database</a>. It is updated on a monthly basis. Each binary interaction is displayed on a separate line.<p><a href='/help/binary_interactions' target='_top'>More...</a></p>Binary interactionsi

WithEntry#Exp.IntActNotes
rngP0A9J02EBI-543939,EBI-545964

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGrid)

More...BioGridi		852105, 1 interactor

ComplexPortal: manually curated resource of macromolecular complexes

More...ComplexPortali		CPX-3802 30S small ribosomal subunit

Database of interacting proteins

More...DIPi		DIP-35794N

Protein interaction database and analysis system

More...IntActi		P0A7V8, 218 interactors

Molecular INTeraction database

More...MINTi		P0A7V8

STRING: functional protein association networks

More...STRINGi		316385.ECDH10B_3471

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

Secondary structure

1206
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details

3D structure databases

Select the link destinations:

Protein Data Bank Europe

More...PDBei

Protein Data Bank RCSB

More...RCSB PDBi

Protein Data Bank Japan

More...PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1EG0electron microscopy11.50A43-200[»]
1M5Gmodel-D2-206[»]
2YKRelectron microscopy9.80D2-206[»]
3J9Yelectron microscopy3.90d1-206[»]
3J9Zelectron microscopy3.60SD2-206[»]
3JA1electron microscopy3.60SD2-206[»]
3JBUelectron microscopy3.64D1-206[»]
3JBVelectron microscopy3.32D1-206[»]
3JCDelectron microscopy3.70d1-206[»]
3JCEelectron microscopy3.20d1-206[»]
3JCJelectron microscopy3.70l1-206[»]
3JCNelectron microscopy4.60g1-206[»]
4A2Ielectron microscopy16.50D2-206[»]
4ADVelectron microscopy13.50D2-206[»]
4U1UX-ray2.95AD/CD2-206[»]
4U1VX-ray3.00AD/CD2-206[»]
4U20X-ray2.90AD/CD2-206[»]
4U24X-ray2.90AD/CD2-206[»]
4U25X-ray2.90AD/CD2-206[»]
4U26X-ray2.80AD/CD2-206[»]
4U27X-ray2.80AD/CD2-206[»]
4V47electron microscopy12.30BD2-206[»]
4V48electron microscopy11.50BD2-206[»]
4V4HX-ray3.46AD/CD1-206[»]
4V4QX-ray3.46AD/CD2-206[»]
4V4Velectron microscopy15.00AD3-206[»]
4V4Welectron microscopy15.00AD3-206[»]
4V50X-ray3.22AD/CD2-206[»]
4V52X-ray3.21AD/CD2-206[»]
4V53X-ray3.54AD/CD2-206[»]
4V54X-ray3.30AD/CD2-206[»]
4V55X-ray4.00AD/CD2-206[»]
4V56X-ray3.93AD/CD2-206[»]
4V57X-ray3.50AD/CD2-206[»]
4V5BX-ray3.74BD/DD2-206[»]
4V5Helectron microscopy5.80AD2-206[»]
4V5YX-ray4.45AD/CD2-206[»]
4V64X-ray3.50AD/CD2-206[»]
4V65electron microscopy9.00AR1-206[»]
4V66electron microscopy9.00AR1-206[»]
4V69electron microscopy6.70AD2-206[»]
4V6CX-ray3.19AD/CD1-206[»]
4V6DX-ray3.81AD/CD1-206[»]
4V6EX-ray3.71AD/CD1-206[»]
4V6Kelectron microscopy8.25BH1-206[»]
4V6Lelectron microscopy13.20AH1-206[»]
4V6Melectron microscopy7.10AD2-206[»]
4V6Nelectron microscopy12.10BG2-206[»]
4V6Oelectron microscopy14.70AG2-206[»]
4V6Pelectron microscopy13.50AG2-206[»]
4V6Qelectron microscopy11.50AG2-206[»]
4V6Relectron microscopy11.50AG2-206[»]
4V6Selectron microscopy13.10BF2-206[»]
4V6Telectron microscopy8.30AD2-206[»]
4V6Velectron microscopy9.80AD2-206[»]
4V6Yelectron microscopy12.00AD1-206[»]
4V6Zelectron microscopy12.00AD1-206[»]
4V70electron microscopy17.00AD1-206[»]
4V71electron microscopy20.00AD1-206[»]
4V72electron microscopy13.00AD1-206[»]
4V73electron microscopy15.00AD1-206[»]
4V74electron microscopy17.00AD1-206[»]
4V75electron microscopy12.00AD1-206[»]
4V76electron microscopy17.00AD1-206[»]
4V77electron microscopy17.00AD1-206[»]
4V78electron microscopy20.00AD1-206[»]
4V79electron microscopy15.00AD1-206[»]
4V7Aelectron microscopy9.00AD1-206[»]
4V7Belectron microscopy6.80AD1-206[»]
4V7Celectron microscopy7.60AD2-206[»]
4V7Delectron microscopy7.60BD2-206[»]
4V7Ielectron microscopy9.60BD1-206[»]
4V7SX-ray3.25AD/CD2-206[»]
4V7TX-ray3.19AD/CD2-206[»]
4V7UX-ray3.10AD/CD2-206[»]
4V7VX-ray3.29AD/CD2-206[»]
4V85X-ray3.20AD1-206[»]
4V89X-ray3.70AD1-206[»]
4V9CX-ray3.30AD/CD1-206[»]
4V9DX-ray3.00AD/BD2-206[»]
4V9OX-ray2.90BD/DD/FD/HD1-206[»]
4V9PX-ray2.90BD/DD/FD/HD1-206[»]
4WF1X-ray3.09AD/CD2-206[»]
4WOIX-ray3.00AD/DD1-206[»]
4WWWX-ray3.10QD/XD2-206[»]
4YBBX-ray2.10AD/BD2-206[»]
5AFIelectron microscopy2.90d1-206[»]
5H5Uelectron microscopy3.00k2-206[»]
5IQRelectron microscopy3.00i1-206[»]
5IT8X-ray3.12AD/BD2-206[»]
5J5BX-ray2.80AD/BD2-206[»]
5J7LX-ray3.00AD/BD2-206[»]
5J88X-ray3.32AD/BD2-206[»]
5J8AX-ray3.10AD/BD2-206[»]
5J91X-ray2.96AD/BD2-206[»]
5JC9X-ray3.03AD/BD2-206[»]
5JTEelectron microscopy3.60AD1-206[»]
5JU8electron microscopy3.60AD1-206[»]
5KCRelectron microscopy3.601d1-206[»]
5KCSelectron microscopy3.901d1-206[»]
5KPSelectron microscopy3.9091-206[»]
5KPVelectron microscopy4.1081-206[»]
5KPWelectron microscopy3.9081-206[»]
5KPXelectron microscopy3.9081-206[»]
5L3Pelectron microscopy3.70d1-206[»]
5LZAelectron microscopy3.60d2-206[»]
5LZBelectron microscopy5.30d2-206[»]
5LZCelectron microscopy4.80d2-206[»]
5LZDelectron microscopy3.40d2-206[»]
5LZEelectron microscopy3.50d2-206[»]
5LZFelectron microscopy4.60d2-206[»]
5MDVelectron microscopy2.97i1-206[»]
5MDWelectron microscopy3.06i1-206[»]
5MDYelectron microscopy3.35i1-206[»]
5MDZelectron microscopy3.10i1-206[»]
5ME0electron microscopy13.50D1-206[»]
5ME1electron microscopy13.50D1-206[»]
5MGPelectron microscopy3.10d2-206[»]
5MY1electron microscopy7.60D2-206[»]
5NO2electron microscopy5.16D2-206[»]
5NO3electron microscopy5.16D2-206[»]
5NO4electron microscopy5.16D2-206[»]
5NP6electron microscopy3.60G2-206[»]
5NWYelectron microscopy2.9331-206[»]
5O2Relectron microscopy3.40d2-206[»]
5U4Ielectron microscopy3.50d1-206[»]
5U4Jelectron microscopy3.70d1-206[»]
5U9Felectron microscopy3.20D1-206[»]
5U9Gelectron microscopy3.20D1-206[»]
5UYKelectron microscopy3.90D2-206[»]
5UYLelectron microscopy3.60D2-206[»]
5UYMelectron microscopy3.20D2-206[»]
5UYNelectron microscopy4.00D2-206[»]
5UYPelectron microscopy3.90D2-206[»]
5UYQelectron microscopy3.80D2-206[»]
5UZ4electron microscopy5.80D1-206[»]
5WDTelectron microscopy3.00d2-206[»]
5WE4electron microscopy3.10d2-206[»]
5WE6electron microscopy3.40d2-206[»]
5WFKelectron microscopy3.40d2-206[»]
6BU8electron microscopy3.50D2-206[»]
6C4Ielectron microscopy3.24d1-206[»]
6ENFelectron microscopy3.20d2-206[»]
6ENJelectron microscopy3.70d2-206[»]
6ENUelectron microscopy3.10d2-206[»]
6GWTelectron microscopy3.80d2-206[»]
6GXMelectron microscopy3.80d2-206[»]
6GXNelectron microscopy3.90d2-206[»]
6GXOelectron microscopy3.90d2-206[»]
6GXPelectron microscopy4.40d2-206[»]
6H4Nelectron microscopy3.00d2-206[»]
6H58electron microscopy7.90d/dd2-206[»]
6HRMelectron microscopy2.96i2-206[»]
6I7VX-ray2.90AD/BD2-206[»]

Protein Model Portal of the PSI-Nature Structural Biology Knowledgebase

More...ProteinModelPortali		P0A7V8

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...SMRi		P0A7V8

Database of comparative protein structure models

More...ModBasei		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

Miscellaneous databases

Relative evolutionary importance of amino acids within a protein sequence

More...EvolutionaryTracei		P0A7V8

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini96 – 156S4 RNA-bindingAdd BLAST61

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the universal ribosomal protein uS4 family.Curated

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		ENOG4105G6W Bacteria
COG0522 LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		HOG000221003

InParanoid: Eukaryotic Ortholog Groups

More...InParanoidi		P0A7V8

KEGG Orthology (KO)

More...KOi		K02986

Database for complete collections of gene phylogenies

More...PhylomeDBi		P0A7V8

Family and domain databases

Conserved Domains Database

More...CDDi		cd00165 S4, 1 hit

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		3.10.290.10, 1 hit

HAMAP database of protein families

More...HAMAPi		MF_01306_B Ribosomal_S4_B, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR022801 Ribosomal_S4/S9
IPR001912 Ribosomal_S4/S9_N
IPR005709 Ribosomal_S4_bac-type
IPR018079 Ribosomal_S4_CS
IPR002942 S4_RNA-bd
IPR036986 S4_RNA-bd_sf

The PANTHER Classification System

More...PANTHERi		PTHR11831 PTHR11831, 1 hit
PTHR11831:SF4 PTHR11831:SF4, 1 hit

Pfam protein domain database

More...Pfami		View protein in Pfam
PF00163 Ribosomal_S4, 1 hit
PF01479 S4, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...SMARTi		View protein in SMART
SM01390 Ribosomal_S4, 1 hit
SM00363 S4, 1 hit

TIGRFAMs; a protein family database

More...TIGRFAMsi		TIGR01017 rpsD_bact, 1 hit

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS00632 RIBOSOMAL_S4, 1 hit
PS50889 S4, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is in its mature form or if it represents the precursor.<p><a href='/help/sequence_processing' target='_top'>More...</a></p>Sequence processingi: The displayed sequence is further processed into a mature form.

P0A7V8-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MARYLGPKLK LSRREGTDLF LKSGVRAIDT KCKIEQAPGQ HGARKPRLSD 
        60         70         80         90        100
YGVQLREKQK VRRIYGVLER QFRNYYKEAA RLKGNTGENL LALLEGRLDN 
       110        120        130        140        150
VVYRMGFGAT RAEARQLVSH KAIMVNGRVV NIASYQVSPN DVVSIREKAK 
       160        170        180        190        200
KQSRVKAALE LAEQREKPTW LEVDAGKMEG TFKRKPERSD LSADINEHLI 

VELYSK
Length:206
Mass (Da):23,469
Last modified:January 23, 2007 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i4015969DF8E582BB
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti91Missing AA sequence (PubMed:4587210).Curated1
Sequence conflicti91Missing AA sequence (PubMed:1100394).Curated1
Sequence conflicti95E → Q AA sequence (PubMed:4587210).Curated1
Sequence conflicti95E → Q AA sequence (PubMed:1100394).Curated1
Sequence conflicti138 – 144SPNDVVS → DPNSVV AA sequence (PubMed:4587210).Curated7
Sequence conflicti138 – 144SPNDVVS → DPNSVV AA sequence (PubMed:1100394).Curated7
Sequence conflicti152Q → E AA sequence (PubMed:4587210).Curated1
Sequence conflicti152Q → E AA sequence (PubMed:1100394).Curated1
Sequence conflicti166E → Q AA sequence (PubMed:4587210).Curated1
Sequence conflicti166E → Q AA sequence (PubMed:1100394).Curated1

<p>This subsection of the ‘Sequence’ section reports information derived from mass spectrometry experiments done on the entire protein or on biologically active derived peptide(s).<p><a href='/help/mass_spectrometry' target='_top'>More...</a></p>Mass spectrometryi

Molecular mass is 23339.5 Da from positions 2 - 206. Determined by MALDI. 1 Publication

Natural variant

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section describes natural variant(s) of the protein sequence.<p><a href='/help/variant' target='_top'>More...</a></p>Natural varianti51Y → D in rpsD101; suppresses a temperature-sensitive mutant of release factor 1, R137P. Not a ram mutation. 1
Natural varianti170 – 206Missing in rpsD16; suppresses streptomycin dependence in protein S12. A ram mutation. Add BLAST37
Natural varianti177 – 206KMEGT…ELYSK → GRYV in rpsD12; suppresses streptomycin dependence in protein S12. A ram mutation. Add BLAST30
Natural varianti179 – 206EGTFK…ELYSK → ARYV in rpsD14; suppresses streptomycin dependence in protein S12. A ram mutation. Add BLAST28

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
X02543 Genomic DNA Translation: CAA26394.1
U18997 Genomic DNA Translation: AAA58094.1
U00096 Genomic DNA Translation: AAC76321.1
AP009048 Genomic DNA Translation: BAE77995.1
V00353 Genomic DNA Translation: CAA23645.1
J01685 Genomic DNA Translation: AAA24576.1

Protein sequence database of the Protein Information Resource

More...PIRi		C23807 R3EC4

NCBI Reference Sequences

More...RefSeqi		NP_417755.1, NC_000913.3
WP_000135224.1, NZ_LN832404.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...EnsemblBacteriai		AAC76321; AAC76321; b3296
BAE77995; BAE77995; BAE77995

Database of genes from NCBI RefSeq genomes

More...GeneIDi		35807177
947793

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		ecj:JW3258
eco:b3296

Pathosystems Resource Integration Center (PATRIC)

More...PATRICi		fig|1411691.4.peg.3435

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X02543 Genomic DNA Translation: CAA26394.1
U18997 Genomic DNA Translation: AAA58094.1
U00096 Genomic DNA Translation: AAC76321.1
AP009048 Genomic DNA Translation: BAE77995.1
V00353 Genomic DNA Translation: CAA23645.1
J01685 Genomic DNA Translation: AAA24576.1
PIRiC23807 R3EC4
RefSeqiNP_417755.1, NC_000913.3
WP_000135224.1, NZ_LN832404.1

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1EG0electron microscopy11.50A43-200[»]
1M5Gmodel-D2-206[»]
2YKRelectron microscopy9.80D2-206[»]
3J9Yelectron microscopy3.90d1-206[»]
3J9Zelectron microscopy3.60SD2-206[»]
3JA1electron microscopy3.60SD2-206[»]
3JBUelectron microscopy3.64D1-206[»]
3JBVelectron microscopy3.32D1-206[»]
3JCDelectron microscopy3.70d1-206[»]
3JCEelectron microscopy3.20d1-206[»]
3JCJelectron microscopy3.70l1-206[»]
3JCNelectron microscopy4.60g1-206[»]
4A2Ielectron microscopy16.50D2-206[»]
4ADVelectron microscopy13.50D2-206[»]
4U1UX-ray2.95AD/CD2-206[»]
4U1VX-ray3.00AD/CD2-206[»]
4U20X-ray2.90AD/CD2-206[»]
4U24X-ray2.90AD/CD2-206[»]
4U25X-ray2.90AD/CD2-206[»]
4U26X-ray2.80AD/CD2-206[»]
4U27X-ray2.80AD/CD2-206[»]
4V47electron microscopy12.30BD2-206[»]
4V48electron microscopy11.50BD2-206[»]
4V4HX-ray3.46AD/CD1-206[»]
4V4QX-ray3.46AD/CD2-206[»]
4V4Velectron microscopy15.00AD3-206[»]
4V4Welectron microscopy15.00AD3-206[»]
4V50X-ray3.22AD/CD2-206[»]
4V52X-ray3.21AD/CD2-206[»]
4V53X-ray3.54AD/CD2-206[»]
4V54X-ray3.30AD/CD2-206[»]
4V55X-ray4.00AD/CD2-206[»]
4V56X-ray3.93AD/CD2-206[»]
4V57X-ray3.50AD/CD2-206[»]
4V5BX-ray3.74BD/DD2-206[»]
4V5Helectron microscopy5.80AD2-206[»]
4V5YX-ray4.45AD/CD2-206[»]
4V64X-ray3.50AD/CD2-206[»]
4V65electron microscopy9.00AR1-206[»]
4V66electron microscopy9.00AR1-206[»]
4V69electron microscopy6.70AD2-206[»]
4V6CX-ray3.19AD/CD1-206[»]
4V6DX-ray3.81AD/CD1-206[»]
4V6EX-ray3.71AD/CD1-206[»]
4V6Kelectron microscopy8.25BH1-206[»]
4V6Lelectron microscopy13.20AH1-206[»]
4V6Melectron microscopy7.10AD2-206[»]
4V6Nelectron microscopy12.10BG2-206[»]
4V6Oelectron microscopy14.70AG2-206[»]
4V6Pelectron microscopy13.50AG2-206[»]
4V6Qelectron microscopy11.50AG2-206[»]
4V6Relectron microscopy11.50AG2-206[»]
4V6Selectron microscopy13.10BF2-206[»]
4V6Telectron microscopy8.30AD2-206[»]
4V6Velectron microscopy9.80AD2-206[»]
4V6Yelectron microscopy12.00AD1-206[»]
4V6Zelectron microscopy12.00AD1-206[»]
4V70electron microscopy17.00AD1-206[»]
4V71electron microscopy20.00AD1-206[»]
4V72electron microscopy13.00AD1-206[»]
4V73electron microscopy15.00AD1-206[»]
4V74electron microscopy17.00AD1-206[»]
4V75electron microscopy12.00AD1-206[»]
4V76electron microscopy17.00AD1-206[»]
4V77electron microscopy17.00AD1-206[»]
4V78electron microscopy20.00AD1-206[»]
4V79electron microscopy15.00AD1-206[»]
4V7Aelectron microscopy9.00AD1-206[»]
4V7Belectron microscopy6.80AD1-206[»]
4V7Celectron microscopy7.60AD2-206[»]
4V7Delectron microscopy7.60BD2-206[»]
4V7Ielectron microscopy9.60BD1-206[»]
4V7SX-ray3.25AD/CD2-206[»]
4V7TX-ray3.19AD/CD2-206[»]
4V7UX-ray3.10AD/CD2-206[»]
4V7VX-ray3.29AD/CD2-206[»]
4V85X-ray3.20AD1-206[»]
4V89X-ray3.70AD1-206[»]
4V9CX-ray3.30AD/CD1-206[»]
4V9DX-ray3.00AD/BD2-206[»]
4V9OX-ray2.90BD/DD/FD/HD1-206[»]
4V9PX-ray2.90BD/DD/FD/HD1-206[»]
4WF1X-ray3.09AD/CD2-206[»]
4WOIX-ray3.00AD/DD1-206[»]
4WWWX-ray3.10QD/XD2-206[»]
4YBBX-ray2.10AD/BD2-206[»]
5AFIelectron microscopy2.90d1-206[»]
5H5Uelectron microscopy3.00k2-206[»]
5IQRelectron microscopy3.00i1-206[»]
5IT8X-ray3.12AD/BD2-206[»]
5J5BX-ray2.80AD/BD2-206[»]
5J7LX-ray3.00AD/BD2-206[»]
5J88X-ray3.32AD/BD2-206[»]
5J8AX-ray3.10AD/BD2-206[»]
5J91X-ray2.96AD/BD2-206[»]
5JC9X-ray3.03AD/BD2-206[»]
5JTEelectron microscopy3.60AD1-206[»]
5JU8electron microscopy3.60AD1-206[»]
5KCRelectron microscopy3.601d1-206[»]
5KCSelectron microscopy3.901d1-206[»]
5KPSelectron microscopy3.9091-206[»]
5KPVelectron microscopy4.1081-206[»]
5KPWelectron microscopy3.9081-206[»]
5KPXelectron microscopy3.9081-206[»]
5L3Pelectron microscopy3.70d1-206[»]
5LZAelectron microscopy3.60d2-206[»]
5LZBelectron microscopy5.30d2-206[»]
5LZCelectron microscopy4.80d2-206[»]
5LZDelectron microscopy3.40d2-206[»]
5LZEelectron microscopy3.50d2-206[»]
5LZFelectron microscopy4.60d2-206[»]
5MDVelectron microscopy2.97i1-206[»]
5MDWelectron microscopy3.06i1-206[»]
5MDYelectron microscopy3.35i1-206[»]
5MDZelectron microscopy3.10i1-206[»]
5ME0electron microscopy13.50D1-206[»]
5ME1electron microscopy13.50D1-206[»]
5MGPelectron microscopy3.10d2-206[»]
5MY1electron microscopy7.60D2-206[»]
5NO2electron microscopy5.16D2-206[»]
5NO3electron microscopy5.16D2-206[»]
5NO4electron microscopy5.16D2-206[»]
5NP6electron microscopy3.60G2-206[»]
5NWYelectron microscopy2.9331-206[»]
5O2Relectron microscopy3.40d2-206[»]
5U4Ielectron microscopy3.50d1-206[»]
5U4Jelectron microscopy3.70d1-206[»]
5U9Felectron microscopy3.20D1-206[»]
5U9Gelectron microscopy3.20D1-206[»]
5UYKelectron microscopy3.90D2-206[»]
5UYLelectron microscopy3.60D2-206[»]
5UYMelectron microscopy3.20D2-206[»]
5UYNelectron microscopy4.00D2-206[»]
5UYPelectron microscopy3.90D2-206[»]
5UYQelectron microscopy3.80D2-206[»]
5UZ4electron microscopy5.80D1-206[»]
5WDTelectron microscopy3.00d2-206[»]
5WE4electron microscopy3.10d2-206[»]
5WE6electron microscopy3.40d2-206[»]
5WFKelectron microscopy3.40d2-206[»]
6BU8electron microscopy3.50D2-206[»]
6C4Ielectron microscopy3.24d1-206[»]
6ENFelectron microscopy3.20d2-206[»]
6ENJelectron microscopy3.70d2-206[»]
6ENUelectron microscopy3.10d2-206[»]
6GWTelectron microscopy3.80d2-206[»]
6GXMelectron microscopy3.80d2-206[»]
6GXNelectron microscopy3.90d2-206[»]
6GXOelectron microscopy3.90d2-206[»]
6GXPelectron microscopy4.40d2-206[»]
6H4Nelectron microscopy3.00d2-206[»]
6H58electron microscopy7.90d/dd2-206[»]
6HRMelectron microscopy2.96i2-206[»]
6I7VX-ray2.90AD/BD2-206[»]
ProteinModelPortaliP0A7V8
SMRiP0A7V8
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi852105, 1 interactor
ComplexPortaliCPX-3802 30S small ribosomal subunit
DIPiDIP-35794N
IntActiP0A7V8, 218 interactors
MINTiP0A7V8
STRINGi316385.ECDH10B_3471

Chemistry databases

DrugBankiDB00453 Clomocycline
DB00618 Demeclocycline
DB00254 Doxycycline
DB00256 Lymecycline
DB01017 Minocycline
DB00595 Oxytetracycline

Protein family/group databases

MoonProtiP0A7V8

Proteomic databases

EPDiP0A7V8
jPOSTiP0A7V8
PaxDbiP0A7V8
PRIDEiP0A7V8

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76321; AAC76321; b3296
BAE77995; BAE77995; BAE77995
GeneIDi35807177
947793
KEGGiecj:JW3258
eco:b3296
PATRICifig|1411691.4.peg.3435

Organism-specific databases

EchoBASE - an integrated post-genomic database for E. coli

More...EchoBASEi		EB0896
EcoGeneiEG10903 rpsD

Phylogenomic databases

eggNOGiENOG4105G6W Bacteria
COG0522 LUCA
HOGENOMiHOG000221003
InParanoidiP0A7V8
KOiK02986
PhylomeDBiP0A7V8

Enzyme and pathway databases

BioCyciEcoCyc:EG10903-MONOMER
ECOL316407:JW3258-MONOMER
MetaCyc:EG10903-MONOMER

Miscellaneous databases

EvolutionaryTraceiP0A7V8

Protein Ontology

More...PROi		PR:P0A7V8

Family and domain databases

CDDicd00165 S4, 1 hit
Gene3Di3.10.290.10, 1 hit
HAMAPiMF_01306_B Ribosomal_S4_B, 1 hit
InterProiView protein in InterPro
IPR022801 Ribosomal_S4/S9
IPR001912 Ribosomal_S4/S9_N
IPR005709 Ribosomal_S4_bac-type
IPR018079 Ribosomal_S4_CS
IPR002942 S4_RNA-bd
IPR036986 S4_RNA-bd_sf
PANTHERiPTHR11831 PTHR11831, 1 hit
PTHR11831:SF4 PTHR11831:SF4, 1 hit
PfamiView protein in Pfam
PF00163 Ribosomal_S4, 1 hit
PF01479 S4, 1 hit
SMARTiView protein in SMART
SM01390 Ribosomal_S4, 1 hit
SM00363 S4, 1 hit
TIGRFAMsiTIGR01017 rpsD_bact, 1 hit
PROSITEiView protein in PROSITE
PS00632 RIBOSOMAL_S4, 1 hit
PS50889 S4, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiRS4_ECOLI
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: P0A7V8
Secondary accession number(s): P02354, Q2M6W1
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 21, 1986
Last sequence update: January 23, 2007
Last modified: February 13, 2019
This is version 149 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families
  3. Ribosomal proteins
    Ribosomal proteins families and list of entries
  4. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
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