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UniProtKB - P0A7M9 (RL31_ECOLI)

Entry version 127 (08 May 2019)
Sequence version 1 (07 Jun 2005)
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Protein

50S ribosomal protein L31

Gene

rpmE

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Binds the 23S rRNA.By similarity

<p>This subsection of the ‘Function’ section provides information relevant to cofactors. A cofactor is any non-protein substance required for a protein to be catalytically active. Some cofactors are inorganic, such as the metal atoms zinc, iron, and copper in various oxidation states. Others, such as most vitamins, are organic.<p><a href='/help/cofactor' target='_top'>More...</a></p>Cofactori

Zn2+1 PublicationNote: Binds 1 zinc ion per subunit. Only 1 ligand appears to be Cys, the other are thought to be His and either backbone amides or solvent (PubMed:22196016).1 Publication

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Function’ section indicates at which position the protein binds a given metal ion. The nature of the metal is indicated in the ‘Description’ field.<p><a href='/help/metal' target='_top'>More...</a></p>Metal bindingi16ZincCurated1

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

View the complete GO annotation on QuickGO ...

GO - Biological processi

View the complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding
LigandMetal-binding, Zinc

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

More...BioCyci		EcoCyc:EG10889-MONOMER
ECOL316407:JW3907-MONOMER
MetaCyc:EG10889-MONOMER

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
50S ribosomal protein L31
Alternative name(s):
Large ribosomal subunit protein bL31-A1 Publication
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:rpmE
Ordered Locus Names:b3936, JW3907
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiEscherichia coli (strain K12)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri83333 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteria › Proteobacteria › Gammaproteobacteria › Enterobacterales › Enterobacteriaceae › Escherichia ›
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000318 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

Escherichia coli strain K12 genome database

More...EcoGenei		EG10889 rpmE

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

GO - Cellular componenti

View the complete GO annotation on QuickGO ...

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

Mutagenesis

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/manual/pathology_and_biotech_section">'Pathology and Biotech'</a> section describes the effect of the experimental mutation of one or more amino acid(s) on the biological properties of the protein.<p><a href='/help/mutagen' target='_top'>More...</a></p>Mutagenesisi16C → S: No Zn(2+) binding. 1 Publication1
Mutagenesisi18C → S: Binds Zn(2+) normally. 1 Publication1
Mutagenesisi37 – 40CSKC → SSKS: Binds Zn(2+) normally. 1 Publication4

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00001731021 – 7050S ribosomal protein L31Add BLAST70

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section specifies the position and type of each modified residue excluding <a href="http://www.uniprot.org/manual/lipid">lipids</a>, <a href="http://www.uniprot.org/manual/carbohyd">glycans</a> and <a href="http://www.uniprot.org/manual/crosslnk">protein cross-links</a>.<p><a href='/help/mod_res' target='_top'>More...</a></p>Modified residuei8N6-acetyllysine1 Publication1

<p>This subsection of the <a href="http://www.uniprot.org/help/ptm_processing_section">PTM/processing</a> section describes post-translational modifications (PTMs). This subsection <strong>complements</strong> the information provided at the sequence level or describes modifications for which <strong>position-specific data is not yet available</strong>.<p><a href='/help/post-translational_modification' target='_top'>More...</a></p>Post-translational modificationi

Proteolytically cleaved by protease VII to yield a peptide lacking residues 63-70. It is not clear if this is due to protein degradation or is a bona fide processing event in the strain used in PubMed:339950 and PubMed:10556732. In strains B, D10, MRE-600 and Q13 the only protein seen in PubMed:10556732 was full-length; the last 7 amino acids were sequenced only for strain MRE-600.2 Publications

Keywords - PTMi

Acetylation

Proteomic databases

Encyclopedia of Proteome Dynamics

More...EPDi		P0A7M9

jPOST - Japan Proteome Standard Repository/Database

More...jPOSTi		P0A7M9

PaxDb, a database of protein abundance averages across all three domains of life

More...PaxDbi		P0A7M9

PRoteomics IDEntifications database

More...PRIDEi		P0A7M9

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...iPTMneti		P0A7M9

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction_section">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Part of the 50S ribosomal subunit.6 Publications

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGrid)

More...BioGridi		4261184, 44 interactors

ComplexPortal: manually curated resource of macromolecular complexes

More...ComplexPortali		CPX-3807 50S large ribosomal subunit

Protein interaction database and analysis system

More...IntActi		P0A7M9, 14 interactors

STRING: functional protein association networks

More...STRINGi		511145.b3936

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

Secondary structure

170
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details

3D structure databases

Select the link destinations:

Protein Data Bank Europe

More...PDBei

Protein Data Bank RCSB

More...RCSB PDBi

Protein Data Bank Japan

More...PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2J28electron microscopy8.00Z1-70[»]
2RDOelectron microscopy9.10Z1-70[»]
3BBXelectron microscopy10.00Z1-70[»]
3J9Yelectron microscopy3.9061-70[»]
3J9Zelectron microscopy3.60LZ1-70[»]
3JA1electron microscopy3.60L21-70[»]
4V4HX-ray3.46BZ/DZ1-70[»]
4V4QX-ray3.46BZ/DZ1-70[»]
4V5BX-ray3.74AZ/CZ1-70[»]
4V65electron microscopy9.00BS1-70[»]
4V66electron microscopy9.00BS1-70[»]
4V6Kelectron microscopy8.25Ab1-70[»]
4V6Lelectron microscopy13.20Bb1-70[»]
4V6Nelectron microscopy12.10A21-70[»]
4V6Oelectron microscopy14.70B21-70[»]
4V6Pelectron microscopy13.50B21-70[»]
4V6Qelectron microscopy11.50B21-70[»]
4V6Relectron microscopy11.50B21-70[»]
4V6Selectron microscopy13.10A21-70[»]
4V6Velectron microscopy9.80B41-70[»]
5AFIelectron microscopy2.9061-70[»]
5AKAelectron microscopy5.70Z1-70[»]
5IQRelectron microscopy3.00a1-70[»]
5KCSelectron microscopy3.90141-70[»]
5KPSelectron microscopy3.9011-70[»]
5KPVelectron microscopy4.10Z1-70[»]
5KPWelectron microscopy3.90Z1-70[»]
5KPXelectron microscopy3.90Z1-70[»]
5L3Pelectron microscopy3.7041-70[»]
5LZAelectron microscopy3.6061-66[»]
5LZBelectron microscopy5.3061-66[»]
5LZCelectron microscopy4.8061-66[»]
5LZDelectron microscopy3.4061-66[»]
5LZEelectron microscopy3.5061-66[»]
5LZFelectron microscopy4.6061-66[»]
5MDVelectron microscopy2.97a1-70[»]
5MDWelectron microscopy3.06a1-70[»]
5MDYelectron microscopy3.35a1-70[»]
5MDZelectron microscopy3.10a1-70[»]
5MGPelectron microscopy3.1061-66[»]
5NP6electron microscopy3.6041-66[»]
5NWYelectron microscopy2.93L1-70[»]
5O2Relectron microscopy3.4061-66[»]
5U9Felectron microscopy3.20291-70[»]
5U9Gelectron microscopy3.20291-70[»]
5UYKelectron microscopy3.90291-66[»]
5UYLelectron microscopy3.60291-66[»]
5UYMelectron microscopy3.20291-66[»]
5UYNelectron microscopy4.00291-66[»]
5UYPelectron microscopy3.90291-66[»]
5UYQelectron microscopy3.80291-66[»]
5WDTelectron microscopy3.0061-66[»]
5WE4electron microscopy3.1061-66[»]
5WE6electron microscopy3.4061-66[»]
5WFKelectron microscopy3.4061-66[»]
6BU8electron microscopy3.50291-66[»]
6BY1X-ray3.94C0/D010-48[»]
6C4Ielectron microscopy3.2411-70[»]
6ENFelectron microscopy3.2061-66[»]
6ENJelectron microscopy3.7061-66[»]
6ENUelectron microscopy3.1061-66[»]
6H4Nelectron microscopy3.0061-66[»]
6H58electron microscopy7.906/661-66[»]
6HRMelectron microscopy2.96a1-66[»]
6Q98electron microscopy4.30a1-70[»]

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...SMRi		P0A7M9

Database of comparative protein structure models

More...ModBasei		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

Miscellaneous databases

Relative evolutionary importance of amino acids within a protein sequence

More...EvolutionaryTracei		P0A7M9

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.Curated

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		ENOG4105VFB Bacteria
COG0254 LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		HOG000284895

InParanoid: Eukaryotic Ortholog Groups

More...InParanoidi		P0A7M9

KEGG Orthology (KO)

More...KOi		K02909

Database for complete collections of gene phylogenies

More...PhylomeDBi		P0A7M9

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		2.30.170.50, 1 hit

HAMAP database of protein families

More...HAMAPi		MF_00501 Ribosomal_L31_1, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR034704 L28p-like
IPR002150 Ribosomal_L31
IPR027491 Ribosomal_L31_A
IPR042105 Ribosomal_L31_sf

The PANTHER Classification System

More...PANTHERi		PTHR33280 PTHR33280, 1 hit

Pfam protein domain database

More...Pfami		View protein in Pfam
PF01197 Ribosomal_L31, 1 hit

Protein Motif fingerprint database; a protein domain database

More...PRINTSi		PR01249 RIBOSOMALL31

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF143800 SSF143800, 1 hit

TIGRFAMs; a protein family database

More...TIGRFAMsi		TIGR00105 L31, 1 hit

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS01143 RIBOSOMAL_L31, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

P0A7M9-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MKKDIHPKYE EITASCSCGN VMKIRSTVGH DLNLDVCSKC HPFFTGKQRD 
        60         70
VATGGRVDRF NKRFNIPGSK
Length:70
Mass (Da):7,871
Last modified:June 7, 2005 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iD657A681A0B858CF
GO

<p>This subsection of the ‘Sequence’ section reports information derived from mass spectrometry experiments done on the entire protein or on biologically active derived peptide(s).<p><a href='/help/mass_spectrometry' target='_top'>More...</a></p>Mass spectrometryi

Molecular mass is 6971.1 Da from positions 1 - 62. Determined by MALDI. 1 Publication
Molecular mass is 7871.0 Da from positions 1 - 70. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
X78541 Genomic DNA Translation: CAA55286.1
L19201 Genomic DNA Translation: AAB03068.1
U00096 Genomic DNA Translation: AAC76918.1
AP009048 Genomic DNA Translation: BAE77374.1

Protein sequence database of the Protein Information Resource

More...PIRi		S40879 R5EC31

NCBI Reference Sequences

More...RefSeqi		NP_418371.1, NC_000913.3
WP_000710769.1, NZ_LN832404.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...EnsemblBacteriai		AAC76918; AAC76918; b3936
BAE77374; BAE77374; BAE77374

Database of genes from NCBI RefSeq genomes

More...GeneIDi		948425

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		ecj:JW3907
eco:b3936

Pathosystems Resource Integration Center (PATRIC)

More...PATRICi		fig|1411691.4.peg.2769

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X78541 Genomic DNA Translation: CAA55286.1
L19201 Genomic DNA Translation: AAB03068.1
U00096 Genomic DNA Translation: AAC76918.1
AP009048 Genomic DNA Translation: BAE77374.1
PIRiS40879 R5EC31
RefSeqiNP_418371.1, NC_000913.3
WP_000710769.1, NZ_LN832404.1

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2J28electron microscopy8.00Z1-70[»]
2RDOelectron microscopy9.10Z1-70[»]
3BBXelectron microscopy10.00Z1-70[»]
3J9Yelectron microscopy3.9061-70[»]
3J9Zelectron microscopy3.60LZ1-70[»]
3JA1electron microscopy3.60L21-70[»]
4V4HX-ray3.46BZ/DZ1-70[»]
4V4QX-ray3.46BZ/DZ1-70[»]
4V5BX-ray3.74AZ/CZ1-70[»]
4V65electron microscopy9.00BS1-70[»]
4V66electron microscopy9.00BS1-70[»]
4V6Kelectron microscopy8.25Ab1-70[»]
4V6Lelectron microscopy13.20Bb1-70[»]
4V6Nelectron microscopy12.10A21-70[»]
4V6Oelectron microscopy14.70B21-70[»]
4V6Pelectron microscopy13.50B21-70[»]
4V6Qelectron microscopy11.50B21-70[»]
4V6Relectron microscopy11.50B21-70[»]
4V6Selectron microscopy13.10A21-70[»]
4V6Velectron microscopy9.80B41-70[»]
5AFIelectron microscopy2.9061-70[»]
5AKAelectron microscopy5.70Z1-70[»]
5IQRelectron microscopy3.00a1-70[»]
5KCSelectron microscopy3.90141-70[»]
5KPSelectron microscopy3.9011-70[»]
5KPVelectron microscopy4.10Z1-70[»]
5KPWelectron microscopy3.90Z1-70[»]
5KPXelectron microscopy3.90Z1-70[»]
5L3Pelectron microscopy3.7041-70[»]
5LZAelectron microscopy3.6061-66[»]
5LZBelectron microscopy5.3061-66[»]
5LZCelectron microscopy4.8061-66[»]
5LZDelectron microscopy3.4061-66[»]
5LZEelectron microscopy3.5061-66[»]
5LZFelectron microscopy4.6061-66[»]
5MDVelectron microscopy2.97a1-70[»]
5MDWelectron microscopy3.06a1-70[»]
5MDYelectron microscopy3.35a1-70[»]
5MDZelectron microscopy3.10a1-70[»]
5MGPelectron microscopy3.1061-66[»]
5NP6electron microscopy3.6041-66[»]
5NWYelectron microscopy2.93L1-70[»]
5O2Relectron microscopy3.4061-66[»]
5U9Felectron microscopy3.20291-70[»]
5U9Gelectron microscopy3.20291-70[»]
5UYKelectron microscopy3.90291-66[»]
5UYLelectron microscopy3.60291-66[»]
5UYMelectron microscopy3.20291-66[»]
5UYNelectron microscopy4.00291-66[»]
5UYPelectron microscopy3.90291-66[»]
5UYQelectron microscopy3.80291-66[»]
5WDTelectron microscopy3.0061-66[»]
5WE4electron microscopy3.1061-66[»]
5WE6electron microscopy3.4061-66[»]
5WFKelectron microscopy3.4061-66[»]
6BU8electron microscopy3.50291-66[»]
6BY1X-ray3.94C0/D010-48[»]
6C4Ielectron microscopy3.2411-70[»]
6ENFelectron microscopy3.2061-66[»]
6ENJelectron microscopy3.7061-66[»]
6ENUelectron microscopy3.1061-66[»]
6H4Nelectron microscopy3.0061-66[»]
6H58electron microscopy7.906/661-66[»]
6HRMelectron microscopy2.96a1-66[»]
6Q98electron microscopy4.30a1-70[»]
SMRiP0A7M9
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261184, 44 interactors
ComplexPortaliCPX-3807 50S large ribosomal subunit
IntActiP0A7M9, 14 interactors
STRINGi511145.b3936

PTM databases

iPTMnetiP0A7M9

Proteomic databases

EPDiP0A7M9
jPOSTiP0A7M9
PaxDbiP0A7M9
PRIDEiP0A7M9

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76918; AAC76918; b3936
BAE77374; BAE77374; BAE77374
GeneIDi948425
KEGGiecj:JW3907
eco:b3936
PATRICifig|1411691.4.peg.2769

Organism-specific databases

EchoBASE - an integrated post-genomic database for E. coli

More...EchoBASEi		EB0882
EcoGeneiEG10889 rpmE

Phylogenomic databases

eggNOGiENOG4105VFB Bacteria
COG0254 LUCA
HOGENOMiHOG000284895
InParanoidiP0A7M9
KOiK02909
PhylomeDBiP0A7M9

Enzyme and pathway databases

BioCyciEcoCyc:EG10889-MONOMER
ECOL316407:JW3907-MONOMER
MetaCyc:EG10889-MONOMER

Miscellaneous databases

EvolutionaryTraceiP0A7M9

Protein Ontology

More...PROi		PR:P0A7M9

Family and domain databases

Gene3Di2.30.170.50, 1 hit
HAMAPiMF_00501 Ribosomal_L31_1, 1 hit
InterProiView protein in InterPro
IPR034704 L28p-like
IPR002150 Ribosomal_L31
IPR027491 Ribosomal_L31_A
IPR042105 Ribosomal_L31_sf
PANTHERiPTHR33280 PTHR33280, 1 hit
PfamiView protein in Pfam
PF01197 Ribosomal_L31, 1 hit
PRINTSiPR01249 RIBOSOMALL31
SUPFAMiSSF143800 SSF143800, 1 hit
TIGRFAMsiTIGR00105 L31, 1 hit
PROSITEiView protein in PROSITE
PS01143 RIBOSOMAL_L31, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiRL31_ECOLI
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: P0A7M9
Secondary accession number(s): P02432, Q2M8N2
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 21, 1986
Last sequence update: June 7, 2005
Last modified: May 8, 2019
This is version 127 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families
  3. Ribosomal proteins
    Ribosomal proteins families and list of entries
  4. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
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