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Protein

50S ribosomal protein L11

Gene

rplK

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

  • large ribosomal subunit rRNA binding Source: GO_Central
  • rRNA binding Source: EcoCyc
  • structural constituent of ribosome Source: CAFA

GO - Biological processi

  • ribosomal large subunit assembly Source: CAFA
  • stringent response Source: EcoCyc
  • translation Source: GO_Central
  • translational termination Source: EcoCyc

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

More...
BioCyci
EcoCyc:EG10872-MONOMER
MetaCyc:EG10872-MONOMER

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
50S ribosomal protein L11UniRule annotation
Alternative name(s):
Large ribosomal subunit protein uL111 Publication
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:rplKUniRule annotation
Synonyms:relC
Ordered Locus Names:b3983, JW3946
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiEscherichia coli (strain K12)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri83333 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000318 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

Escherichia coli strain K12 genome database

More...
EcoGenei
EG10872 rplK

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

GO - Cellular componenti

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/ptm_processing_section">PTM / Processing</a> section indicates that the initiator methionine is cleaved from the mature protein.<p><a href='/help/init_met' target='_top'>More...</a></p>Initiator methionineiRemoved1 Publication
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00001042832 – 14250S ribosomal protein L11Add BLAST141

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section specifies the position and type of each modified residue excluding <a href="http://www.uniprot.org/manual/lipid">lipids</a>, <a href="http://www.uniprot.org/manual/carbohyd">glycans</a> and <a href="http://www.uniprot.org/manual/crosslnk">protein cross-links</a>.<p><a href='/help/mod_res' target='_top'>More...</a></p>Modified residuei2N,N,N-trimethylalanine1 Publication1
Modified residuei4N6,N6,N6-trimethyllysine1 Publication1
Modified residuei40N6,N6,N6-trimethyllysine1 Publication1
Modified residuei72N6-succinyllysine1 Publication1
Modified residuei81N6-succinyllysine1 Publication1

Keywords - PTMi

Methylation

Proteomic databases

Encyclopedia of Proteome Dynamics

More...
EPDi
P0A7J7

jPOST - Japan Proteome Standard Repository/Database

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jPOSTi
P0A7J7

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
P0A7J7

PRoteomics IDEntifications database

More...
PRIDEi
P0A7J7

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
P0A7J7

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction_section">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Part of the ribosomal stalk of the 50S ribosomal subunit (PubMed:15923259). Interacts with L10 and the large rRNA to form the base of the stalk. L10 forms an elongated spine to which 2 L12 dimers bind in a sequential fashion forming a pentameric L10(L12)2(L12)2 complex (PubMed:15923259).11 Publications

<p>This subsection of the '<a href="http://www.uniprot.org/help/interaction_section%27">Interaction</a> section provides information about binary protein-protein interactions. The data presented in this section are a quality-filtered subset of binary interactions automatically derived from the <a href="http://www.ebi.ac.uk/intact/">IntAct database</a>. It is updated on a monthly basis. Each binary interaction is displayed on a separate line.<p><a href='/help/binary_interactions' target='_top'>More...</a></p>Binary interactionsi

WithEntry#Exp.IntActNotes
prmAP0A8T14EBI-547288,EBI-556300

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGrid)

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BioGridi
852778, 1 interactor

Database of interacting proteins

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DIPi
DIP-35882N

Protein interaction database and analysis system

More...
IntActi
P0A7J7, 49 interactors

STRING: functional protein association networks

More...
STRINGi
316385.ECDH10B_4171

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

Secondary structure

1142
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details

3D structure databases

Select the link destinations:

Protein Data Bank Europe

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PDBei

Protein Data Bank RCSB

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RCSB PDBi

Protein Data Bank Japan

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PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1EG0electron microscopy11.50K1-140[»]
1MJ1electron microscopy13.00L1-141[»]
1ML5electron microscopy14.00l1-141[»]
2J28electron microscopy8.00I2-142[»]
2RDOelectron microscopy9.10I2-142[»]
3DEGelectron microscopy-H2-142[»]
3EP2electron microscopy-I2-142[»]
3EQ3electron microscopy-I2-142[»]
3EQ4electron microscopy-I2-142[»]
3J0Delectron microscopy11.10G2-142[»]
3J5Lelectron microscopy6.60I2-142[»]
3J7Zelectron microscopy3.90I1-142[»]
3J8Gelectron microscopy5.00I1-142[»]
3J9Yelectron microscopy3.90I1-142[»]
3J9Zelectron microscopy3.60LE2-142[»]
3JA1electron microscopy3.60LK2-142[»]
3JBVelectron microscopy3.32i1-142[»]
3JCDelectron microscopy3.70I1-142[»]
3JCEelectron microscopy3.20I1-142[»]
3JCJelectron microscopy3.70H1-142[»]
3JCNelectron microscopy4.60I1-142[»]
487Delectron microscopy7.50L10-86[»]
4CSUelectron microscopy5.50I2-142[»]
4U1UX-ray2.95BI/DI2-142[»]
4U1VX-ray3.00BI/DI2-142[»]
4U20X-ray2.90BI/DI2-142[»]
4U24X-ray2.90BI/DI2-142[»]
4U25X-ray2.90BI/DI2-142[»]
4U26X-ray2.80BI/DI2-142[»]
4U27X-ray2.80BI/DI2-142[»]
4UY8electron microscopy3.80I2-142[»]
4V47electron microscopy12.30AG2-142[»]
4V48electron microscopy11.50AG2-142[»]
4V4HX-ray3.46BI/DI1-142[»]
4V4QX-ray3.46BI/DI2-142[»]
4V4Velectron microscopy15.00BG3-141[»]
4V4Welectron microscopy15.00BG3-141[»]
4V50X-ray3.22BI/DI2-142[»]
4V52X-ray3.21BI/DI2-142[»]
4V53X-ray3.54BI/DI2-142[»]
4V54X-ray3.30BI/DI2-142[»]
4V55X-ray4.00BI/DI2-142[»]
4V56X-ray3.93BI/DI2-142[»]
4V57X-ray3.50BI/DI2-142[»]
4V5BX-ray3.74AI/CI2-142[»]
4V5Helectron microscopy5.80BI2-142[»]
4V5YX-ray4.45BI/DI2-142[»]
4V64X-ray3.50BI/DI2-142[»]
4V65electron microscopy9.00B51-142[»]
4V66electron microscopy9.00B51-142[»]
4V69electron microscopy6.70BI2-142[»]
4V6CX-ray3.19BI/DI1-142[»]
4V6DX-ray3.81BI/DI1-142[»]
4V6EX-ray3.71BI/DI1-142[»]
4V6Kelectron microscopy8.25AJ1-142[»]
4V6Lelectron microscopy13.20BJ1-142[»]
4V6Melectron microscopy7.10BI2-142[»]
4V6Nelectron microscopy12.10AK2-142[»]
4V6Oelectron microscopy14.70BK2-142[»]
4V6Pelectron microscopy13.50BK2-142[»]
4V6Qelectron microscopy11.50BK2-142[»]
4V6Relectron microscopy11.50BK2-142[»]
4V6Selectron microscopy13.10AK2-142[»]
4V6Telectron microscopy8.30BI2-142[»]
4V6Velectron microscopy9.80BK2-142[»]
4V6Yelectron microscopy12.00BI1-142[»]
4V6Zelectron microscopy12.00BI1-142[»]
4V70electron microscopy17.00BI1-142[»]
4V71electron microscopy20.00BI1-142[»]
4V72electron microscopy13.00BI1-142[»]
4V73electron microscopy15.00BI1-142[»]
4V74electron microscopy17.00BI1-142[»]
4V75electron microscopy12.00BI1-142[»]
4V76electron microscopy17.00BI1-142[»]
4V77electron microscopy17.00BI1-142[»]
4V78electron microscopy20.00BI1-142[»]
4V79electron microscopy15.00BI1-142[»]
4V7Aelectron microscopy9.00BI1-142[»]
4V7Belectron microscopy6.80BI1-142[»]
4V7Celectron microscopy7.60BK2-142[»]
4V7Delectron microscopy7.60AK2-142[»]
4V7Ielectron microscopy9.60AI1-142[»]
4V7SX-ray3.25BI/DI2-142[»]
4V7TX-ray3.19BI/DI2-142[»]
4V7UX-ray3.10BI/DI2-142[»]
4V7VX-ray3.29BI/DI2-142[»]
4V85X-ray3.20I1-142[»]
4V89X-ray3.70BI1-142[»]
4V9CX-ray3.30BI/DI1-142[»]
4V9DX-ray3.00CI/DI2-142[»]
4V9OX-ray2.90AI/CI/EI/GI1-142[»]
4V9PX-ray2.90AI/CI/EI/GI1-142[»]
4WF1X-ray3.09BI/DI2-142[»]
4WOIX-ray3.00BI/CI1-142[»]
4WWWX-ray3.10RI/YI2-142[»]
4YBBX-ray2.10CJ/DJ8-141[»]
5ADYelectron microscopy4.50I1-142[»]
5AFIelectron microscopy2.90I1-142[»]
5AKAelectron microscopy5.70I2-142[»]
5GADelectron microscopy3.70J1-142[»]
5GAEelectron microscopy3.33J1-142[»]
5GAFelectron microscopy4.30J8-141[»]
5GAGelectron microscopy3.80J1-142[»]
5GAHelectron microscopy3.80J1-142[»]
5H5Uelectron microscopy3.00J2-142[»]
5IQRelectron microscopy3.00I1-142[»]
5IT8X-ray3.12CJ/DJ8-141[»]
5J5BX-ray2.80CJ/DJ8-141[»]
5J7LX-ray3.00CJ/DJ8-141[»]
5J88X-ray3.32CJ/DJ8-142[»]
5J8AX-ray3.10CJ/DJ8-142[»]
5J91X-ray2.96CJ/DJ8-141[»]
5JC9X-ray3.03CJ/DJ8-141[»]
5JTEelectron microscopy3.60BI1-142[»]
5JU8electron microscopy3.60BI1-142[»]
5KCRelectron microscopy3.601K1-142[»]
5KCSelectron microscopy3.901K1-142[»]
5KPSelectron microscopy3.90I1-142[»]
5KPVelectron microscopy4.10H1-142[»]
5KPWelectron microscopy3.90H1-142[»]
5KPXelectron microscopy3.90H1-142[»]
5L3Pelectron microscopy3.70K1-142[»]
5LZAelectron microscopy3.60I2-142[»]
5LZBelectron microscopy5.30I2-142[»]
5LZCelectron microscopy4.80I2-142[»]
5LZDelectron microscopy3.40I2-142[»]
5LZEelectron microscopy3.50I2-142[»]
5LZFelectron microscopy4.60I2-142[»]
5MDVelectron microscopy2.97I1-142[»]
5MDWelectron microscopy3.06I1-142[»]
5MDYelectron microscopy3.35I1-142[»]
5MDZelectron microscopy3.10I1-142[»]
5NCOelectron microscopy4.80J8-141[»]
5NP6electron microscopy3.60g2-142[»]
5NWYelectron microscopy2.93V1-142[»]
5O2Relectron microscopy3.40I2-142[»]
5U4Ielectron microscopy3.50J1-142[»]
5U9Felectron microscopy3.20111-142[»]
5U9Gelectron microscopy3.20111-142[»]
5UYKelectron microscopy3.90112-142[»]
5UYLelectron microscopy3.60112-142[»]
5UYMelectron microscopy3.20112-142[»]
5UYNelectron microscopy4.00112-142[»]
5UYPelectron microscopy3.90112-142[»]
5UYQelectron microscopy3.80112-142[»]
5WDTelectron microscopy3.00I2-142[»]
5WE4electron microscopy3.10I2-142[»]
5WE6electron microscopy3.40I2-142[»]
5WFKelectron microscopy3.40I2-142[»]
6BU8electron microscopy3.50112-142[»]
6C4Ielectron microscopy3.24J1-142[»]
6GWTelectron microscopy3.80I2-142[»]
6GXMelectron microscopy3.80I2-142[»]
6GXNelectron microscopy3.90I2-142[»]
6GXOelectron microscopy3.90I2-142[»]
6GXPelectron microscopy4.40I2-142[»]

Protein Model Portal of the PSI-Nature Structural Biology Knowledgebase

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ProteinModelPortali
P0A7J7

SWISS-MODEL Repository - a database of annotated 3D protein structure models

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SMRi
P0A7J7

Database of comparative protein structure models

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ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

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MobiDBi
Search...

Miscellaneous databases

Relative evolutionary importance of amino acids within a protein sequence

More...
EvolutionaryTracei
P0A7J7

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the universal ribosomal protein uL11 family.UniRule annotation

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
COG0080 LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

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HOGENOMi
HOG000082123

InParanoid: Eukaryotic Ortholog Groups

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InParanoidi
P0A7J7

KEGG Orthology (KO)

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KOi
K02867

Database for complete collections of gene phylogenies

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PhylomeDBi
P0A7J7

Family and domain databases

Conserved Domains Database

More...
CDDi
cd00349 Ribosomal_L11, 1 hit

Gene3D Structural and Functional Annotation of Protein Families

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Gene3Di
1.10.10.250, 1 hit
3.30.1550.10, 1 hit

HAMAP database of protein families

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HAMAPi
MF_00736 Ribosomal_L11, 1 hit

Integrated resource of protein families, domains and functional sites

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InterProi
View protein in InterPro
IPR000911 Ribosomal_L11/L12
IPR036796 Ribosomal_L11/L12_N_sf
IPR006519 Ribosomal_L11_bac-typ
IPR020783 Ribosomal_L11_C
IPR036769 Ribosomal_L11_C_sf
IPR020785 Ribosomal_L11_CS
IPR020784 Ribosomal_L11_N

The PANTHER Classification System

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PANTHERi
PTHR11661 PTHR11661, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00298 Ribosomal_L11, 1 hit
PF03946 Ribosomal_L11_N, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00649 RL11, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF46906 SSF46906, 1 hit
SSF54747 SSF54747, 1 hit

TIGRFAMs; a protein family database

More...
TIGRFAMsi
TIGR01632 L11_bact, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS00359 RIBOSOMAL_L11, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is in its mature form or if it represents the precursor.<p><a href='/help/sequence_processing' target='_top'>More...</a></p>Sequence processingi: The displayed sequence is further processed into a mature form.

P0A7J7-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAKKVQAYVK LQVAAGMANP SPPVGPALGQ QGVNIMEFCK AFNAKTDSIE
60 70 80 90 100
KGLPIPVVIT VYADRSFTFV TKTPPAAVLL KKAAGIKSGS GKPNKDKVGK
110 120 130 140
ISRAQLQEIA QTKAADMTGA DIEAMTRSIE GTARSMGLVV ED
Length:142
Mass (Da):14,875
Last modified:January 23, 2007 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iC49226BB2462BE0F
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti132T → S in CAA23621 (PubMed:377281).Curated1

<p>This subsection of the ‘Sequence’ section reports information derived from mass spectrometry experiments done on the entire protein or on biologically active derived peptide(s).<p><a href='/help/mass_spectrometry' target='_top'>More...</a></p>Mass spectrometryi

Molecular mass is 14870.2 Da from positions 2 - 142. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

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DDBJi
Links Updated
V00339 Genomic DNA Translation: CAA23621.1
M30610 Genomic DNA Translation: AAA24623.1
U00006 Genomic DNA Translation: AAC43081.1
U00096 Genomic DNA Translation: AAC76957.1
AP009048 Genomic DNA Translation: BAE77337.1

Protein sequence database of the Protein Information Resource

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PIRi
S12572 R5EC11

NCBI Reference Sequences

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RefSeqi
NP_418410.1, NC_000913.3
WP_001085926.1, NZ_LN832404.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

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EnsemblBacteriai
AAC76957; AAC76957; b3983
BAE77337; BAE77337; BAE77337

Database of genes from NCBI RefSeq genomes

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GeneIDi
948484

KEGG: Kyoto Encyclopedia of Genes and Genomes

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KEGGi
ecj:JW3946
eco:b3983

Pathosystems Resource Integration Center (PATRIC)

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PATRICi
fig|1411691.4.peg.2729

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
V00339 Genomic DNA Translation: CAA23621.1
M30610 Genomic DNA Translation: AAA24623.1
U00006 Genomic DNA Translation: AAC43081.1
U00096 Genomic DNA Translation: AAC76957.1
AP009048 Genomic DNA Translation: BAE77337.1
PIRiS12572 R5EC11
RefSeqiNP_418410.1, NC_000913.3
WP_001085926.1, NZ_LN832404.1

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1EG0electron microscopy11.50K1-140[»]
1MJ1electron microscopy13.00L1-141[»]
1ML5electron microscopy14.00l1-141[»]
2J28electron microscopy8.00I2-142[»]
2RDOelectron microscopy9.10I2-142[»]
3DEGelectron microscopy-H2-142[»]
3EP2electron microscopy-I2-142[»]
3EQ3electron microscopy-I2-142[»]
3EQ4electron microscopy-I2-142[»]
3J0Delectron microscopy11.10G2-142[»]
3J5Lelectron microscopy6.60I2-142[»]
3J7Zelectron microscopy3.90I1-142[»]
3J8Gelectron microscopy5.00I1-142[»]
3J9Yelectron microscopy3.90I1-142[»]
3J9Zelectron microscopy3.60LE2-142[»]
3JA1electron microscopy3.60LK2-142[»]
3JBVelectron microscopy3.32i1-142[»]
3JCDelectron microscopy3.70I1-142[»]
3JCEelectron microscopy3.20I1-142[»]
3JCJelectron microscopy3.70H1-142[»]
3JCNelectron microscopy4.60I1-142[»]
487Delectron microscopy7.50L10-86[»]
4CSUelectron microscopy5.50I2-142[»]
4U1UX-ray2.95BI/DI2-142[»]
4U1VX-ray3.00BI/DI2-142[»]
4U20X-ray2.90BI/DI2-142[»]
4U24X-ray2.90BI/DI2-142[»]
4U25X-ray2.90BI/DI2-142[»]
4U26X-ray2.80BI/DI2-142[»]
4U27X-ray2.80BI/DI2-142[»]
4UY8electron microscopy3.80I2-142[»]
4V47electron microscopy12.30AG2-142[»]
4V48electron microscopy11.50AG2-142[»]
4V4HX-ray3.46BI/DI1-142[»]
4V4QX-ray3.46BI/DI2-142[»]
4V4Velectron microscopy15.00BG3-141[»]
4V4Welectron microscopy15.00BG3-141[»]
4V50X-ray3.22BI/DI2-142[»]
4V52X-ray3.21BI/DI2-142[»]
4V53X-ray3.54BI/DI2-142[»]
4V54X-ray3.30BI/DI2-142[»]
4V55X-ray4.00BI/DI2-142[»]
4V56X-ray3.93BI/DI2-142[»]
4V57X-ray3.50BI/DI2-142[»]
4V5BX-ray3.74AI/CI2-142[»]
4V5Helectron microscopy5.80BI2-142[»]
4V5YX-ray4.45BI/DI2-142[»]
4V64X-ray3.50BI/DI2-142[»]
4V65electron microscopy9.00B51-142[»]
4V66electron microscopy9.00B51-142[»]
4V69electron microscopy6.70BI2-142[»]
4V6CX-ray3.19BI/DI1-142[»]
4V6DX-ray3.81BI/DI1-142[»]
4V6EX-ray3.71BI/DI1-142[»]
4V6Kelectron microscopy8.25AJ1-142[»]
4V6Lelectron microscopy13.20BJ1-142[»]
4V6Melectron microscopy7.10BI2-142[»]
4V6Nelectron microscopy12.10AK2-142[»]
4V6Oelectron microscopy14.70BK2-142[»]
4V6Pelectron microscopy13.50BK2-142[»]
4V6Qelectron microscopy11.50BK2-142[»]
4V6Relectron microscopy11.50BK2-142[»]
4V6Selectron microscopy13.10AK2-142[»]
4V6Telectron microscopy8.30BI2-142[»]
4V6Velectron microscopy9.80BK2-142[»]
4V6Yelectron microscopy12.00BI1-142[»]
4V6Zelectron microscopy12.00BI1-142[»]
4V70electron microscopy17.00BI1-142[»]
4V71electron microscopy20.00BI1-142[»]
4V72electron microscopy13.00BI1-142[»]
4V73electron microscopy15.00BI1-142[»]
4V74electron microscopy17.00BI1-142[»]
4V75electron microscopy12.00BI1-142[»]
4V76electron microscopy17.00BI1-142[»]
4V77electron microscopy17.00BI1-142[»]
4V78electron microscopy20.00BI1-142[»]
4V79electron microscopy15.00BI1-142[»]
4V7Aelectron microscopy9.00BI1-142[»]
4V7Belectron microscopy6.80BI1-142[»]
4V7Celectron microscopy7.60BK2-142[»]
4V7Delectron microscopy7.60AK2-142[»]
4V7Ielectron microscopy9.60AI1-142[»]
4V7SX-ray3.25BI/DI2-142[»]
4V7TX-ray3.19BI/DI2-142[»]
4V7UX-ray3.10BI/DI2-142[»]
4V7VX-ray3.29BI/DI2-142[»]
4V85X-ray3.20I1-142[»]
4V89X-ray3.70BI1-142[»]
4V9CX-ray3.30BI/DI1-142[»]
4V9DX-ray3.00CI/DI2-142[»]
4V9OX-ray2.90AI/CI/EI/GI1-142[»]
4V9PX-ray2.90AI/CI/EI/GI1-142[»]
4WF1X-ray3.09BI/DI2-142[»]
4WOIX-ray3.00BI/CI1-142[»]
4WWWX-ray3.10RI/YI2-142[»]
4YBBX-ray2.10CJ/DJ8-141[»]
5ADYelectron microscopy4.50I1-142[»]
5AFIelectron microscopy2.90I1-142[»]
5AKAelectron microscopy5.70I2-142[»]
5GADelectron microscopy3.70J1-142[»]
5GAEelectron microscopy3.33J1-142[»]
5GAFelectron microscopy4.30J8-141[»]
5GAGelectron microscopy3.80J1-142[»]
5GAHelectron microscopy3.80J1-142[»]
5H5Uelectron microscopy3.00J2-142[»]
5IQRelectron microscopy3.00I1-142[»]
5IT8X-ray3.12CJ/DJ8-141[»]
5J5BX-ray2.80CJ/DJ8-141[»]
5J7LX-ray3.00CJ/DJ8-141[»]
5J88X-ray3.32CJ/DJ8-142[»]
5J8AX-ray3.10CJ/DJ8-142[»]
5J91X-ray2.96CJ/DJ8-141[»]
5JC9X-ray3.03CJ/DJ8-141[»]
5JTEelectron microscopy3.60BI1-142[»]
5JU8electron microscopy3.60BI1-142[»]
5KCRelectron microscopy3.601K1-142[»]
5KCSelectron microscopy3.901K1-142[»]
5KPSelectron microscopy3.90I1-142[»]
5KPVelectron microscopy4.10H1-142[»]
5KPWelectron microscopy3.90H1-142[»]
5KPXelectron microscopy3.90H1-142[»]
5L3Pelectron microscopy3.70K1-142[»]
5LZAelectron microscopy3.60I2-142[»]
5LZBelectron microscopy5.30I2-142[»]
5LZCelectron microscopy4.80I2-142[»]
5LZDelectron microscopy3.40I2-142[»]
5LZEelectron microscopy3.50I2-142[»]
5LZFelectron microscopy4.60I2-142[»]
5MDVelectron microscopy2.97I1-142[»]
5MDWelectron microscopy3.06I1-142[»]
5MDYelectron microscopy3.35I1-142[»]
5MDZelectron microscopy3.10I1-142[»]
5NCOelectron microscopy4.80J8-141[»]
5NP6electron microscopy3.60g2-142[»]
5NWYelectron microscopy2.93V1-142[»]
5O2Relectron microscopy3.40I2-142[»]
5U4Ielectron microscopy3.50J1-142[»]
5U9Felectron microscopy3.20111-142[»]
5U9Gelectron microscopy3.20111-142[»]
5UYKelectron microscopy3.90112-142[»]
5UYLelectron microscopy3.60112-142[»]
5UYMelectron microscopy3.20112-142[»]
5UYNelectron microscopy4.00112-142[»]
5UYPelectron microscopy3.90112-142[»]
5UYQelectron microscopy3.80112-142[»]
5WDTelectron microscopy3.00I2-142[»]
5WE4electron microscopy3.10I2-142[»]
5WE6electron microscopy3.40I2-142[»]
5WFKelectron microscopy3.40I2-142[»]
6BU8electron microscopy3.50112-142[»]
6C4Ielectron microscopy3.24J1-142[»]
6GWTelectron microscopy3.80I2-142[»]
6GXMelectron microscopy3.80I2-142[»]
6GXNelectron microscopy3.90I2-142[»]
6GXOelectron microscopy3.90I2-142[»]
6GXPelectron microscopy4.40I2-142[»]
ProteinModelPortaliP0A7J7
SMRiP0A7J7
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi852778, 1 interactor
DIPiDIP-35882N
IntActiP0A7J7, 49 interactors
STRINGi316385.ECDH10B_4171

PTM databases

iPTMnetiP0A7J7

Proteomic databases

EPDiP0A7J7
jPOSTiP0A7J7
PaxDbiP0A7J7
PRIDEiP0A7J7

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76957; AAC76957; b3983
BAE77337; BAE77337; BAE77337
GeneIDi948484
KEGGiecj:JW3946
eco:b3983
PATRICifig|1411691.4.peg.2729

Organism-specific databases

EchoBASE - an integrated post-genomic database for E. coli

More...
EchoBASEi
EB0865
EcoGeneiEG10872 rplK

Phylogenomic databases

eggNOGiCOG0080 LUCA
HOGENOMiHOG000082123
InParanoidiP0A7J7
KOiK02867
PhylomeDBiP0A7J7

Enzyme and pathway databases

BioCyciEcoCyc:EG10872-MONOMER
MetaCyc:EG10872-MONOMER

Miscellaneous databases

EvolutionaryTraceiP0A7J7

Protein Ontology

More...
PROi
PR:P0A7J7

Family and domain databases

CDDicd00349 Ribosomal_L11, 1 hit
Gene3Di1.10.10.250, 1 hit
3.30.1550.10, 1 hit
HAMAPiMF_00736 Ribosomal_L11, 1 hit
InterProiView protein in InterPro
IPR000911 Ribosomal_L11/L12
IPR036796 Ribosomal_L11/L12_N_sf
IPR006519 Ribosomal_L11_bac-typ
IPR020783 Ribosomal_L11_C
IPR036769 Ribosomal_L11_C_sf
IPR020785 Ribosomal_L11_CS
IPR020784 Ribosomal_L11_N
PANTHERiPTHR11661 PTHR11661, 1 hit
PfamiView protein in Pfam
PF00298 Ribosomal_L11, 1 hit
PF03946 Ribosomal_L11_N, 1 hit
SMARTiView protein in SMART
SM00649 RL11, 1 hit
SUPFAMiSSF46906 SSF46906, 1 hit
SSF54747 SSF54747, 1 hit
TIGRFAMsiTIGR01632 L11_bact, 1 hit
PROSITEiView protein in PROSITE
PS00359 RIBOSOMAL_L11, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiRL11_ECOLI
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: P0A7J7
Secondary accession number(s): P02409, P76778, Q2M8R9
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 21, 1986
Last sequence update: January 23, 2007
Last modified: January 16, 2019
This is version 138 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families
  3. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  4. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
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